Experiment set10IT055 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS22120 +10.9 96.1 glutamate--cysteine ligase compare
BWI76_RS24075 +9.7 30.5 glutathione synthase compare
BWI76_RS07465 +9.2 25.8 TetR family transcriptional regulator compare
BWI76_RS00140 +9.2 17.6 phosphate transport system regulator PhoU compare
BWI76_RS26685 +7.8 36.9 glutathione-disulfide reductase compare
BWI76_RS01070 +7.3 52.5 thiol reductase thioredoxin compare
BWI76_RS20995 +7.1 47.3 RNA degradosome polyphosphate kinase compare
BWI76_RS27675 +7.1 35.4 EmrB/QacA family drug resistance transporter compare
BWI76_RS20640 +6.2 21.3 cysteine synthase A compare
BWI76_RS09645 +4.0 10.9 thioredoxin-disulfide reductase compare
BWI76_RS26095 +3.0 5.6 shikimate kinase compare
BWI76_RS22090 +3.0 3.6 transcriptional regulator compare
BWI76_RS08405 +2.4 5.1 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS08885 +2.4 1.9 transcriptional regulator compare
BWI76_RS22815 +2.2 14.6 hybrid sensor histidine kinase/response regulator compare
BWI76_RS13980 +2.2 2.6 hypothetical protein compare
BWI76_RS17975 +2.2 5.6 tail-specific protease compare
BWI76_RS20360 +2.1 3.3 cell division protein DedD compare
BWI76_RS17915 +2.0 10.0 membrane protein compare
BWI76_RS01890 +2.0 6.1 transcriptional regulator Zur compare
BWI76_RS00865 +1.9 8.7 DNA-binding transcriptional regulator OxyR compare
BWI76_RS10035 +1.8 1.2 hypothetical protein compare
BWI76_RS05235 +1.8 2.5 hypothetical protein compare
BWI76_RS22085 +1.7 4.5 L-valine transporter subunit YgaH compare
BWI76_RS18335 +1.7 9.8 DNA-binding response regulator compare
BWI76_RS07725 +1.7 1.7 iron-enterobactin transporter permease compare
BWI76_RS09320 +1.7 2.1 P2 phage tail completion protein R compare
BWI76_RS16675 +1.6 2.2 ABC transporter compare
BWI76_RS07640 +1.6 3.1 short chain dehydrogenase compare
BWI76_RS00715 +1.6 3.5 two-component sensor histidine kinase compare
BWI76_RS07475 +1.5 1.6 DNA-binding transcriptional regulator RamA compare
BWI76_RS23125 +1.5 1.4 propanediol dehydratase small subunit compare
BWI76_RS09100 +1.5 3.6 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS20210 +1.4 1.8 5'-deoxynucleotidase compare
BWI76_RS00120 +1.4 1.7 glucosamine-6-phosphate deaminase compare
BWI76_RS10305 +1.4 5.2 transposase compare
BWI76_RS17910 +1.4 4.1 hypothetical protein compare
BWI76_RS12170 +1.4 3.6 hypothetical protein compare
BWI76_RS11635 +1.4 1.3 ABC transporter compare
BWI76_RS14075 +1.4 2.6 TetR family transcriptional regulator compare
BWI76_RS05880 +1.4 1.3 AraC-type DNA-binding domain-containing protein compare
BWI76_RS05005 +1.4 3.6 polynucleotide adenylyltransferase compare
BWI76_RS10530 +1.4 2.5 GntR family transcriptional regulator with compare
BWI76_RS19330 +1.4 1.2 HAD family hydrolase compare
BWI76_RS05520 +1.4 1.7 hypothetical protein compare
BWI76_RS24150 +1.3 2.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
BWI76_RS23540 +1.3 1.3 putative lysine exporter protein compare
BWI76_RS19025 +1.3 7.6 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS08275 +1.3 1.4 LexA regulated protein compare
BWI76_RS06340 +1.3 1.3 hypothetical protein compare
BWI76_RS06785 +1.3 4.5 DNA-binding transcriptional repressor AcrR compare
BWI76_RS05945 +1.3 3.5 amino acid ABC transporter permease compare
BWI76_RS19670 +1.3 1.1 S-formylglutathione hydrolase compare
BWI76_RS07865 +1.3 3.5 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS17980 +1.3 4.9 RNA chaperone ProQ compare
BWI76_RS16655 +1.2 1.9 CatA-like O-acetyltransferase compare
BWI76_RS00430 +1.2 2.4 GNAT family N-acetyltransferase compare
BWI76_RS05440 +1.2 5.6 hydroxyacylglutathione hydrolase compare
BWI76_RS20380 +1.2 1.4 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS23055 +1.2 3.3 cobalamin biosynthesis protein CbiG compare
BWI76_RS06910 +1.2 1.7 transcriptional regulator compare
BWI76_RS16485 +1.2 1.6 ribonuclease T compare
BWI76_RS21690 +1.2 2.3 hypothetical protein compare
BWI76_RS24925 +1.2 2.2 DnaA initiator-associating protein DiaA compare
BWI76_RS14875 +1.2 1.6 ribokinase-like domain-containing protein compare
BWI76_RS04565 +1.2 3.5 bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA compare
BWI76_RS08260 +1.2 2.1 LysR family transcriptional regulator compare
BWI76_RS14615 +1.2 1.8 hypothetical protein compare
BWI76_RS13685 +1.1 2.7 IclR family transcriptional regulator compare
BWI76_RS20155 +1.1 2.9 NADH-quinone oxidoreductase subunit I compare
BWI76_RS01350 +1.1 1.3 NAD(P)H-flavin reductase compare
BWI76_RS01195 +1.1 1.4 membrane protein compare
BWI76_RS15190 +1.1 5.2 GGDEF domain-containing protein compare
BWI76_RS21565 +1.1 1.5 outer membrane protein assembly factor BamE compare
BWI76_RS04705 +1.1 5.1 DNA-binding transcriptional regulator FruR compare
BWI76_RS24180 +1.1 1.3 hypothetical protein compare
BWI76_RS06535 +1.1 4.4 endopeptidase La compare
BWI76_RS21075 +1.1 1.0 membrane protein compare
BWI76_RS05525 +1.1 1.3 glycerophosphodiester phosphodiesterase compare
BWI76_RS13050 +1.1 2.0 transcriptional regulator compare
BWI76_RS27635 +1.0 2.8 AraC family transcriptional regulator compare
BWI76_RS09130 +1.0 3.8 biofilm formation regulatory protein BssR compare
BWI76_RS16360 +1.0 1.4 electron transport complex subunit RsxB compare
BWI76_RS04270 +1.0 2.9 transaldolase compare
BWI76_RS15280 +1.0 5.1 sugar transporter compare
BWI76_RS09535 +1.0 2.2 N-acetylmuramoyl-L-alanine amidase amid compare
BWI76_RS27510 +1.0 3.1 aquaporin compare
BWI76_RS23495 +1.0 5.4 hypothetical protein compare
BWI76_RS00940 +1.0 4.9 transcriptional regulator HdfR compare
BWI76_RS22130 +1.0 1.0 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS08840 +1.0 1.5 hypothetical protein compare
BWI76_RS18870 +1.0 1.2 protein NifZ compare
BWI76_RS20230 +1.0 1.4 hypothetical protein compare
BWI76_RS16035 +1.0 3.1 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS04850 +1.0 4.5 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS25425 +1.0 1.1 arginine repressor compare
BWI76_RS19055 +1.0 4.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BWI76_RS20750 +1.0 1.3 carboxysome structural protein EutK compare
BWI76_RS04895 +1.0 1.0 hypothetical protein compare
BWI76_RS16920 +1.0 0.9 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS09825 +1.0 5.5 envelope biogenesis factor ElyC compare
BWI76_RS21340 +1.0 2.0 SoxR reducing system protein RseC compare
BWI76_RS26185 +1.0 1.5 thiosulfate sulfurtransferase compare
BWI76_RS00755 +1.0 2.4 ATP-dependent protease subunit HslV compare
BWI76_RS12870 +0.9 1.6 putative phytanoyl-CoA dioxygenase compare
BWI76_RS11900 +0.9 1.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS00240 +0.9 1.7 FMN-binding protein MioC compare
BWI76_RS19700 +0.9 1.8 deoxyribonuclease IV compare
BWI76_RS11920 +0.9 2.5 hypothetical protein compare
BWI76_RS21105 +0.9 5.7 penicillin-binding protein 1C compare
BWI76_RS22805 +0.9 5.2 GTP diphosphokinase compare
BWI76_RS03040 +0.9 2.9 leucyl aminopeptidase compare
BWI76_RS11735 +0.9 2.5 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS16315 +0.9 1.0 SirA-like protein compare
BWI76_RS09830 +0.9 1.7 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
BWI76_RS15715 +0.9 2.5 putative ninG protein compare
BWI76_RS26205 +0.9 2.7 glucose-1-phosphate adenylyltransferase compare
BWI76_RS21500 +0.9 1.7 membrane protein compare
BWI76_RS05015 +0.9 1.8 transcriptional regulator compare
BWI76_RS08320 +0.9 3.1 potassium-transporting ATPase subunit KdpA compare
BWI76_RS11845 +0.9 2.1 tryptophan synthase subunit beta compare
BWI76_RS03880 +0.9 2.1 homoprotocatechuate degradation operon regulator, HpaR compare
BWI76_RS13240 +0.9 1.1 hypothetical protein compare
BWI76_RS11585 +0.9 3.5 signal peptide peptidase A compare
BWI76_RS10070 +0.9 2.9 BAX inhibitor protein compare
BWI76_RS15335 +0.9 2.9 branched-chain amino acid ABC transporter permease compare
BWI76_RS04560 +0.9 1.9 holo-ACP synthase CitX compare
BWI76_RS01190 +0.9 2.1 iron donor protein CyaY compare
BWI76_RS13970 +0.9 1.5 ABC transporter compare
BWI76_RS11840 +0.9 2.8 tryptophan synthase subunit alpha compare
BWI76_RS02800 +0.9 1.4 ABC transporter compare
BWI76_RS23505 +0.9 7.0 ferrous iron transporter B compare
BWI76_RS09275 +0.9 3.3 major capsid protein compare
BWI76_RS07460 +0.9 2.2 hypothetical protein compare
BWI76_RS13130 +0.9 2.0 phenylacetic acid degradation protein PaaD compare
BWI76_RS14650 +0.9 1.3 helix-turn-helix transcriptional regulator compare
BWI76_RS17080 +0.9 4.7 hypothetical protein compare
BWI76_RS23470 +0.9 5.8 hypothetical protein compare
BWI76_RS01585 +0.8 3.2 transcriptional regulator compare
BWI76_RS24335 +0.8 1.9 two-component system response regulator QseB compare
BWI76_RS06335 +0.8 1.7 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS24575 +0.8 1.3 hypothetical protein compare
BWI76_RS20915 +0.8 3.6 peroxiredoxin compare
BWI76_RS09105 +0.8 3.0 glutathione ABC transporter permease GsiC compare
BWI76_RS26080 +0.8 1.2 cell division protein DamX compare
BWI76_RS27450 +0.8 3.1 ferredoxin--NADP(+) reductase compare
BWI76_RS25920 +0.8 1.2 peptidylprolyl isomerase compare
BWI76_RS12555 +0.8 3.1 hypothetical protein compare
BWI76_RS13545 +0.8 1.0 N-acetyltransferase compare
BWI76_RS13220 +0.8 2.8 N-acetyltransferase compare
BWI76_RS08395 +0.8 1.6 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS14810 +0.8 3.0 carboxymuconolactone decarboxylase compare
BWI76_RS18905 +0.8 1.4 putrescine/spermidine ABC transporter compare
BWI76_RS09850 +0.8 4.3 L,D-transpeptidase compare
BWI76_RS01200 +0.8 1.5 diaminopimelate epimerase compare
BWI76_RS12160 +0.8 2.7 hypothetical protein compare
BWI76_RS02045 +0.8 1.5 LysR family transcriptional regulator compare
BWI76_RS18110 +0.8 2.2 transcriptional regulator HexR compare
BWI76_RS01010 +0.8 3.8 uridine phosphorylase compare
BWI76_RS23140 +0.8 1.6 carboxysome shell protein compare
BWI76_RS22310 +0.8 2.1 hydrogenase 3 small subunit compare
BWI76_RS08380 +0.8 0.7 endonuclease VIII compare
BWI76_RS13445 +0.8 2.0 alpha/beta hydrolase compare
BWI76_RS19260 +0.8 2.7 multidrug transporter subunit MdtC compare
BWI76_RS11155 +0.8 1.4 penicillin-binding protein activator LpoB compare
BWI76_RS25280 +0.8 1.4 RNase adaptor protein RapZ compare
BWI76_RS24290 +0.8 1.4 membrane protein compare
BWI76_RS21505 +0.8 1.0 hypothetical protein compare
BWI76_RS13260 +0.8 3.8 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
BWI76_RS09625 +0.8 1.1 hypothetical protein compare
BWI76_RS07405 +0.8 1.9 hypothetical protein compare
BWI76_RS12675 +0.8 2.0 putative UV protection and mutation protein compare
BWI76_RS25550 +0.8 3.3 sodium:pantothenate symporter compare
BWI76_RS25300 +0.8 1.4 hybrid sensor histidine kinase/response regulator compare
BWI76_RS09475 +0.8 1.3 putrescine ABC transporter permease PotI compare
BWI76_RS26585 +0.8 2.2 MFS transporter compare
BWI76_RS19785 +0.8 1.8 microcin C ABC transporter permease YejB compare
BWI76_RS22475 +0.7 1.4 heme ABC transporter ATP-binding protein compare
BWI76_RS26285 +0.7 1.5 glycerophosphodiester phosphodiesterase compare
BWI76_RS23490 +0.7 4.0 fimbrial protein compare
BWI76_RS13215 +0.7 1.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS12200 +0.7 2.1 hypothetical protein compare
BWI76_RS20710 +0.7 2.4 dyp-type peroxidase family protein compare
BWI76_RS20735 +0.7 1.1 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS25415 +0.7 1.1 GntR family transcriptional regulator compare
BWI76_RS19050 +0.7 4.3 NAD(P)-dependent oxidoreductase compare
BWI76_RS26120 +0.7 1.3 hypothetical protein compare
BWI76_RS20150 +0.7 1.2 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS07810 +0.7 1.4 sugar ABC transporter periplasmic sugar-binding protein compare
BWI76_RS21245 +0.7 1.2 nitrogen regulatory protein P-II compare
BWI76_RS23345 +0.7 3.1 glycoside hydrolase compare
BWI76_RS16970 +0.7 2.1 murein L,D-transpeptidase compare
BWI76_RS21485 +0.7 3.8 DUF4154 domain-containing protein compare
BWI76_RS22440 +0.7 2.3 iron ABC transporter permease compare
BWI76_RS27455 +0.7 1.2 DUF805 domain-containing protein compare
BWI76_RS22700 +0.7 1.3 sulfate adenylyltransferase subunit 2 compare
BWI76_RS26980 +0.7 1.8 cold-shock protein compare
BWI76_RS10400 +0.7 2.4 hypothetical protein compare
BWI76_RS01715 +0.7 2.4 shikimate 5-dehydrogenase compare
BWI76_RS14860 +0.7 3.0 ABC transporter compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms