Experiment set10IT053 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS26085 -5.6 -3.8 3-dehydroquinate synthase compare
BWI76_RS20895 -5.4 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04160 -4.8 -8.6 phosphoserine phosphatase compare
BWI76_RS21475 -4.8 -7.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18930 -4.6 -5.9 histidinol-phosphate transaminase compare
BWI76_RS23240 -4.5 -4.4 exonuclease V subunit gamma compare
BWI76_RS01615 -4.5 -11.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS21265 -4.4 -15.9 phosphoribosylformylglycinamidine synthase compare
BWI76_RS20350 -4.4 -9.0 amidophosphoribosyltransferase compare
BWI76_RS23230 -4.3 -3.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS04465 -4.3 -5.8 carbamoyl-phosphate synthase small subunit compare
BWI76_RS18940 -4.2 -8.0 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS02995 -4.2 -9.3 aspartate carbamoyltransferase compare
BWI76_RS04470 -4.2 -11.4 carbamoyl phosphate synthase large subunit compare
BWI76_RS23920 -4.2 -4.7 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS04645 -4.2 -7.4 3-dehydroquinase compare
BWI76_RS09755 -4.2 -10.6 phosphoserine transaminase compare
BWI76_RS00965 -4.0 -2.0 acetolactate synthase 2 small subunit compare
BWI76_RS11965 -4.0 -7.0 orotidine-5'-phosphate decarboxylase compare
BWI76_RS09760 -3.8 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS25645 -3.7 -8.6 shikimate dehydrogenase compare
BWI76_RS23365 -3.7 -8.2 LysR family transcriptional regulator compare
BWI76_RS07065 -3.7 -5.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20355 -3.6 -4.2 colicin V production protein compare
BWI76_RS20965 -3.5 -4.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS01210 -3.5 -3.4 tyrosine recombinase XerC compare
BWI76_RS09660 -3.5 -3.9 DNA translocase FtsK compare
BWI76_RS04250 -3.5 -9.7 homoserine kinase compare
BWI76_RS04255 -3.4 -11.8 threonine synthase compare
BWI76_RS18935 -3.4 -10.5 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS07070 -3.4 -6.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS09970 -3.4 -5.6 porin OmpA compare
BWI76_RS18950 -3.3 -6.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS23360 -3.2 -4.1 diaminopimelate decarboxylase compare
BWI76_RS00400 -3.2 -2.2 glutamine synthetase compare
BWI76_RS25115 -3.2 -5.9 argininosuccinate synthase compare
BWI76_RS05840 -3.1 -7.4 glutamate 5-kinase compare
BWI76_RS05835 -3.1 -4.6 gamma-glutamyl-phosphate reductase compare
BWI76_RS09910 -3.1 -14.6 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS01200 -3.0 -3.4 diaminopimelate epimerase compare
BWI76_RS03010 -2.9 -11.1 ornithine carbamoyltransferase compare
BWI76_RS00835 -2.9 -13.3 phosphoenolpyruvate carboxylase compare
BWI76_RS18925 -2.8 -6.7 histidinol dehydrogenase compare
BWI76_RS25335 -2.8 -3.6 stringent starvation protein A compare
BWI76_RS00805 -2.8 -5.5 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS20435 -2.8 -2.6 chorismate synthase compare
BWI76_RS00855 -2.7 -8.5 argininosuccinate lyase compare
BWI76_RS01610 -2.7 -5.7 phosphoribosylamine--glycine ligase compare
BWI76_RS27385 -2.7 -8.0 orotate phosphoribosyltransferase compare
BWI76_RS00990 -2.7 -5.8 ketol-acid reductoisomerase compare
BWI76_RS27390 -2.6 -4.5 ribonuclease PH compare
BWI76_RS00850 -2.6 -9.1 acetylglutamate kinase compare
BWI76_RS23220 -2.5 -9.1 amino-acid N-acetyltransferase compare
BWI76_RS00845 -2.5 -10.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00975 -2.4 -9.0 dihydroxy-acid dehydratase compare
BWI76_RS18955 -2.4 -6.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS25225 -2.4 -9.1 ABC transporter permease compare
BWI76_RS18920 -2.4 -4.9 ATP phosphoribosyltransferase compare
BWI76_RS04245 -2.3 -11.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS15660 -2.3 -2.5 hypothetical protein compare
BWI76_RS10990 -2.3 -2.1 dihydroorotase compare
BWI76_RS04530 -2.2 -2.5 peptidylprolyl isomerase SurA compare
BWI76_RS08385 -2.2 -4.6 citrate (Si)-synthase compare
BWI76_RS09645 -2.1 -2.8 thioredoxin-disulfide reductase compare
BWI76_RS24285 -2.1 -7.0 cystathionine beta-lyase compare
BWI76_RS16965 -2.1 -3.9 murein lipoprotein compare
BWI76_RS04510 -2.1 -2.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS24400 -2.0 -7.7 outer membrane channel protein TolC compare
BWI76_RS21480 -2.0 -5.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS09635 -1.9 -3.2 amino acid ABC transporter ATP-binding protein compare
BWI76_RS05200 -1.9 -3.0 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS01655 -1.9 -8.8 homoserine O-succinyltransferase compare
BWI76_RS09640 -1.9 -4.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS00025 -1.9 -1.5 hypothetical protein compare
BWI76_RS04670 -1.9 -9.2 3-isopropylmalate dehydratase large subunit compare
BWI76_RS25215 -1.9 -5.1 phospholipid-binding protein MlaC compare
BWI76_RS25230 -1.8 -7.9 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS04665 -1.8 -12.5 3-isopropylmalate dehydratase small subunit compare
BWI76_RS27875 -1.8 -2.2 membrane protein compare
BWI76_RS26000 -1.8 -5.5 aspartate aminotransferase family protein compare
BWI76_RS04240 -1.8 -3.9 thr operon leader peptide compare
BWI76_RS17975 -1.8 -5.4 tail-specific protease compare
BWI76_RS00785 -1.8 -5.7 cystathionine gamma-synthase compare
BWI76_RS15115 -1.8 -7.7 MFS transporter compare
BWI76_RS20475 -1.8 -5.7 phospholipid-binding lipoprotein MlaA compare
BWI76_RS15835 -1.7 -2.0 hypothetical protein compare
BWI76_RS08525 -1.6 -5.1 colicin transporter compare
BWI76_RS04680 -1.6 -8.5 2-isopropylmalate synthase compare
BWI76_RS04675 -1.6 -5.9 3-isopropylmalate dehydrogenase compare
BWI76_RS19845 -1.5 -2.7 phosphatase compare
BWI76_RS23265 -1.5 -4.1 hypothetical protein compare
BWI76_RS04685 -1.5 -6.1 putative leucine operon leader peptide compare
BWI76_RS00980 -1.5 -7.3 PLP-dependent threonine dehydratase compare
BWI76_RS08495 -1.5 -5.2 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS22755 -1.5 -5.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS11850 -1.4 -7.2 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS27430 -1.4 -1.5 (p)ppGpp synthetase compare
BWI76_RS21370 -1.4 -2.6 ATP-dependent RNA helicase SrmB compare
BWI76_RS00345 -1.4 -3.0 protein disulfide oxidoreductase DsbA compare
BWI76_RS01110 -1.4 -4.0 TDP-fucosamine acetyltransferase compare
BWI76_RS09190 -1.4 -3.9 hypothetical protein compare
BWI76_RS11845 -1.4 -2.8 tryptophan synthase subunit beta compare
BWI76_RS21070 -1.3 -2.2 outer membrane protein assembly factor BamB compare
BWI76_RS08535 -1.3 -2.5 translocation protein TolB compare
BWI76_RS20440 -1.3 -1.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS05015 -1.3 -2.5 transcriptional regulator compare
BWI76_RS06830 -1.3 -4.3 recombination protein RecR compare
BWI76_RS02180 -1.2 -1.5 hypothetical protein compare
BWI76_RS25160 -1.2 -2.2 transcription elongation factor GreA compare
BWI76_RS21465 -1.2 -2.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS25315 -1.2 -8.6 glutamate synthase large subunit compare
BWI76_RS11900 -1.2 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS08500 -1.2 -2.1 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS20650 -1.2 -1.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS04525 -1.2 -1.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS25320 -1.2 -4.3 glutamate synthase compare
BWI76_RS01220 -1.2 -5.3 DNA-dependent helicase II compare
BWI76_RS11855 -1.1 -4.8 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS01925 -1.1 -7.1 aromatic amino acid aminotransferase compare
BWI76_RS08530 -1.1 -3.1 protein TolA compare
BWI76_RS15705 -1.1 -3.4 putative holin protein compare
BWI76_RS06340 -1.1 -1.0 hypothetical protein compare
BWI76_RS08720 -1.1 -2.3 imidazolonepropionase compare
BWI76_RS05450 -1.1 -1.8 ribonuclease HI compare
BWI76_RS26775 -1.1 -3.8 endo-1,4-D-glucanase compare
BWI76_RS11840 -1.1 -2.5 tryptophan synthase subunit alpha compare
BWI76_RS09030 -1.1 -5.6 transpeptidase compare
BWI76_RS07985 -1.1 -1.3 fluoride ion transporter CrcB compare
BWI76_RS26620 -1.1 -1.2 Fe-S biogenesis protein NfuA compare
BWI76_RS17720 -1.1 -1.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS23970 -1.1 -2.1 mechanosensitive ion channel protein MscS compare
BWI76_RS22805 -1.1 -6.3 GTP diphosphokinase compare
BWI76_RS02735 -1.1 -3.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS11860 -1.1 -5.1 anthranilate synthase component I compare
BWI76_RS15110 -1.1 -8.2 putative excinuclease ABC subunit A compare
BWI76_RS01275 -1.0 -5.0 LysR family transcriptional regulator compare
BWI76_RS09655 -1.0 -3.5 leucine-responsive regulatory protein compare
BWI76_RS22690 -1.0 -2.5 adenylyl-sulfate kinase compare
BWI76_RS01350 -1.0 -1.1 NAD(P)H-flavin reductase compare
BWI76_RS26410 -1.0 -2.1 membrane protein compare
BWI76_RS10295 -1.0 -2.7 short chain dehydrogenase/reductase family oxidoreductase compare
BWI76_RS13215 -1.0 -1.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS20050 -1.0 -1.6 hypothetical protein compare
BWI76_RS00960 -1.0 -4.6 acetolactate synthase 2 catalytic subunit compare
BWI76_RS15825 -1.0 -1.7 hypothetical protein compare
BWI76_RS08825 -1.0 -2.8 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS00985 -1.0 -3.6 transcriptional regulator IlvY compare
BWI76_RS26200 -1.0 -5.0 starch synthase compare
BWI76_RS01540 -1.0 -2.1 thiamine biosynthesis protein ThiS compare
BWI76_RS00875 -0.9 -2.9 DNA-binding transcriptional regulator FabR compare
BWI76_RS26075 -0.9 -2.7 DNA adenine methylase compare
BWI76_RS11275 -0.9 -5.3 sensor protein PhoQ compare
BWI76_RS02410 -0.9 -1.7 EF-P beta-lysylation protein EpmB compare
BWI76_RS15645 -0.9 -4.9 gp6 compare
BWI76_RS12375 -0.9 -1.7 DNA-invertase hin compare
BWI76_RS19325 -0.9 -1.4 mandelate racemase compare
BWI76_RS24575 -0.9 -1.6 hypothetical protein compare
BWI76_RS14770 -0.9 -1.5 PTS IIA 2 domain protein compare
BWI76_RS03105 -0.9 -1.2 myo-inosose-2 dehydratase compare
BWI76_RS25425 -0.9 -1.7 arginine repressor compare
BWI76_RS15635 -0.9 -4.3 hypothetical protein compare
BWI76_RS07780 -0.9 -1.2 hypothetical protein compare
BWI76_RS22085 -0.8 -2.9 L-valine transporter subunit YgaH compare
BWI76_RS20995 -0.8 -3.0 RNA degradosome polyphosphate kinase compare
BWI76_RS01125 -0.8 -2.8 4-alpha-L-fucosyltransferase compare
BWI76_RS04715 -0.8 -1.0 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS04270 -0.8 -2.3 transaldolase compare
BWI76_RS10035 -0.8 -1.2 hypothetical protein compare
BWI76_RS02530 -0.8 -1.7 tRNA dimethylallyltransferase compare
BWI76_RS01280 -0.8 -5.3 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS21285 -0.8 -1.4 HAD family hydrolase compare
BWI76_RS06535 -0.8 -3.3 endopeptidase La compare
BWI76_RS03295 -0.8 -1.8 transposase compare
BWI76_RS21350 -0.8 -1.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS19375 -0.8 -1.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS23195 -0.8 -2.7 ethanolamine utilization protein EutP compare
BWI76_RS11980 -0.8 -1.8 DeoR family transcriptional regulator compare
BWI76_RS02580 -0.8 -1.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS12285 -0.8 -1.8 hypothetical protein compare
BWI76_RS00355 -0.8 -2.0 DNA polymerase I compare
BWI76_RS22760 -0.8 -3.1 sulfite reductase subunit beta compare
BWI76_RS19615 -0.8 -2.0 vancomycin high temperature exclusion protein compare
BWI76_RS19035 -0.8 -3.6 dTDP-rhamnosyl transferase compare
BWI76_RS06325 -0.7 -1.7 hypothetical protein compare
BWI76_RS16075 -0.7 -1.3 oxidoreductase compare
BWI76_RS26630 -0.7 -3.2 pimeloyl-[acyl-carrier protein] methyl ester esterase compare
BWI76_RS19685 -0.7 -3.7 lysine transporter compare
BWI76_RS01195 -0.7 -1.1 membrane protein compare
BWI76_RS12305 -0.7 -3.6 hypothetical protein compare
BWI76_RS05950 -0.7 -1.3 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS06405 -0.7 -2.0 2-dehydropantoate 2-reductase compare
BWI76_RS13720 -0.7 -2.0 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
BWI76_RS01900 -0.7 -1.7 tRNA-dihydrouridine synthase A compare
BWI76_RS16480 -0.7 -2.8 lactoylglutathione lyase compare
BWI76_RS21580 -0.7 -0.9 SsrA-binding protein compare
BWI76_RS24485 -0.7 -1.3 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase compare
BWI76_RS02810 -0.7 -2.4 sugar ABC transporter permease YjfF compare
BWI76_RS23820 -0.7 -2.2 flavodoxin FldB compare
BWI76_RS21340 -0.7 -1.7 SoxR reducing system protein RseC compare
BWI76_RS04955 -0.7 -1.4 hypoxanthine phosphoribosyltransferase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms