Experiment set10IT052 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium malate (C) and Ammonium chloride (N); with TAPS; with PEG

200 most important genes:

  gene name fitness t score description  
PFLU_RS20575 -6.0 -7.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS01620 -4.2 -12.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28645 -4.2 -20.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS29480 -4.0 -14.5 exodeoxyribonuclease III compare
PFLU_RS09845 -4.0 -5.4 biotin carboxyl carrier domain-containing protein compare
PFLU_RS20565 -4.0 -19.5 3-isopropylmalate dehydrogenase compare
PFLU_RS01605 -4.0 -12.6 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS25640 -4.0 -18.3 ketol-acid reductoisomerase compare
PFLU_RS28535 -3.9 -21.3 dihydroxy-acid dehydratase compare
PFLU_RS20580 -3.9 -17.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27370 -3.8 -17.3 anthranilate phosphoribosyltransferase compare
PFLU_RS20540 -3.8 -15.0 phosphoribosylanthranilate isomerase compare
PFLU_RS23380 -3.7 -5.0 HAD-IB family hydrolase compare
PFLU_RS28385 -3.7 -18.3 homoserine O-acetyltransferase compare
PFLU_RS00180 -3.5 -11.2 tryptophan synthase subunit beta compare
PFLU_RS09835 -3.5 -16.9 LysR family transcriptional regulator compare
PFLU_RS01900 -3.4 -11.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS04470 -3.4 -16.5 histidinol dehydrogenase compare
PFLU_RS00175 -3.3 -13.1 tryptophan synthase subunit alpha compare
PFLU_RS09055 -3.3 -3.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS02490 -3.3 -15.8 phosphoserine phosphatase SerB compare
PFLU_RS28655 -3.3 -19.2 HAD family hydrolase compare
PFLU_RS01625 -3.2 -4.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28390 -3.2 -13.1 methionine biosynthesis protein MetW compare
PFLU_RS04465 -3.2 -12.8 ATP phosphoribosyltransferase compare
PFLU_RS25360 -3.2 -9.5 glutamate 5-kinase compare
PFLU_RS24765 -3.2 -20.8 2-isopropylmalate synthase compare
PFLU_RS08655 -3.2 -3.8 heme ABC transporter permease compare
PFLU_RS02590 -3.2 -12.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20510 -3.1 -17.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS23065 -3.1 -13.2 phosphate acyltransferase PlsX compare
PFLU_RS29780 -3.1 -10.1 acyl-CoA thioesterase compare
PFLU_RS20515 -3.1 -5.1 amidophosphoribosyltransferase compare
PFLU_RS12975 -3.1 -6.8 DUF934 domain-containing protein compare
PFLU_RS28165 -3.1 -15.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS23070 -3.0 -2.1 50S ribosomal protein L32 compare
PFLU_RS25715 -3.0 -11.8 RNA polymerase-binding protein DksA compare
PFLU_RS27365 -3.0 -12.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS08675 -3.0 -3.5 DsbE family thiol:disulfide interchange protein compare
PFLU_RS18410 -3.0 -7.2 response regulator compare
PFLU_RS10765 -3.0 -13.3 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS09865 -2.9 -16.1 allantoin permease compare
PFLU_RS22740 -2.8 -5.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS08660 -2.8 -3.3 heme exporter protein CcmD compare
PFLU_RS08125 -2.8 -3.9 integration host factor subunit beta compare
PFLU_RS04165 -2.8 -9.3 cell division protein ZapE compare
PFLU_RS25595 -2.8 -4.2 exodeoxyribonuclease V subunit gamma compare
PFLU_RS20290 -2.7 -3.6 integration host factor subunit alpha compare
PFLU_RS02275 -2.7 -4.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS21495 -2.7 -5.3 TlpA family protein disulfide reductase compare
PFLU_RS10430 -2.7 -4.4 peptidase compare
PFLU_RS27475 -2.7 -10.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS13540 -2.6 -8.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS08670 -2.6 -4.8 heme lyase CcmF/NrfE family subunit compare
PFLU_RS15620 -2.6 -6.3 phenylacetaldoxime dehydratase family protein compare
PFLU_RS04140 -2.5 -4.7 response regulator transcription factor compare
PFLU_RS25760 -2.5 -15.0 glucose-6-phosphate isomerase compare
PFLU_RS18505 -2.5 -12.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS14550 -2.5 -10.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS12980 -2.5 -11.4 nitrite/sulfite reductase compare
PFLU_RS14665 -2.4 -8.4 helix-turn-helix transcriptional regulator compare
PFLU_RS07755 -2.4 -7.8 heavy metal sensor histidine kinase compare
PFLU_RS01285 -2.4 -3.1 HAMP domain-containing protein compare
PFLU_RS02565 -2.3 -8.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS07665 -2.3 -3.1 type I DNA topoisomerase compare
PFLU_RS18395 -2.3 -3.1 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS07230 -2.3 -12.1 RNA polymerase sigma factor RpoE compare
PFLU_RS09840 -2.2 -10.2 5-oxoprolinase subunit PxpA compare
PFLU_RS23115 -2.2 -15.7 dicarboxylate/amino acid:cation symporter compare
PFLU_RS01895 -2.2 -8.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS23510 -2.2 -15.8 5-oxoprolinase subunit PxpA compare
PFLU_RS06310 -2.2 -9.0 sigma E protease regulator RseP compare
PFLU_RS29095 -2.2 -19.0 polyphosphate kinase 1 compare
PFLU_RS25645 -2.2 -4.3 acetolactate synthase small subunit compare
PFLU_RS08155 -2.1 -6.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS25585 -2.1 -4.5 exodeoxyribonuclease V subunit alpha compare
PFLU_RS25755 -2.1 -4.9 pantoate--beta-alanine ligase compare
PFLU_RS01400 -2.1 -13.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS03970 -2.1 -9.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25875 -2.0 -5.6 transcription elongation factor GreA compare
PFLU_RS28695 -2.0 -5.1 phosphoglycerate dehydrogenase compare
PFLU_RS22595 -2.0 -3.9 OmpA family protein compare
PFLU_RS29515 -2.0 -11.4 RidA family protein compare
PFLU_RS02580 -2.0 -12.4 FtsH protease activity modulator HflK compare
PFLU_RS02585 -1.9 -8.4 protease modulator HflC compare
PFLU_RS08665 -1.9 -3.5 cytochrome c maturation protein CcmE compare
PFLU_RS22380 -1.9 -7.0 sulfite exporter TauE/SafE family protein compare
PFLU_RS25800 -1.8 -10.3 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS24025 -1.8 -10.0 quinolinate synthase NadA compare
PFLU_RS04070 -1.8 -4.2 peptide chain release factor 3 compare
PFLU_RS24205 -1.8 -3.1 DNA binding protein compare
PFLU_RS05655 -1.8 -3.8 DeoR/GlpR family transcriptional regulator compare
PFLU_RS04195 -1.8 -5.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS19165 -1.7 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS01645 -1.7 -10.7 S41 family peptidase compare
PFLU_RS05880 -1.7 -6.6 CinA family protein compare
PFLU_RS03880 -1.7 -11.6 ATP-dependent chaperone ClpB compare
PFLU_RS19015 -1.7 -6.9 anti-sigma factor compare
PFLU_RS14670 -1.7 -3.3 GNAT family N-acetyltransferase compare
PFLU_RS22375 -1.7 -8.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS22395 -1.7 -5.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS24555 -1.6 -6.0 thioredoxin fold domain-containing protein compare
PFLU_RS04200 -1.6 -11.3 cytochrome bc complex cytochrome b subunit compare
PFLU_RS21425 -1.6 -3.3 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS08410 -1.6 -8.0 HTH-type transcriptional regulator CysB compare
PFLU_RS28905 -1.6 -9.6 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS04205 -1.6 -9.2 cytochrome c1 compare
PFLU_RS04445 -1.6 -7.0 ABC transporter substrate-binding protein compare
PFLU_RS01995 -1.5 -11.4 malate dehydrogenase compare
PFLU_RS04430 -1.5 -8.4 ATP-binding cassette domain-containing protein compare
PFLU_RS08185 -1.5 -9.5 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS22370 -1.4 -9.0 cadmium-translocating P-type ATPase compare
PFLU_RS26770 -1.4 -9.9 DedA family protein compare
PFLU_RS05890 -1.4 -1.2 recombination regulator RecX compare
PFLU_RS04435 -1.4 -6.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS25750 -1.4 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS08650 -1.4 -2.0 heme exporter protein CcmB compare
PFLU_RS09855 -1.4 -5.8 allophanate hydrolase subunit 1 compare
PFLU_RS17265 -1.3 -3.0 hypothetical protein compare
PFLU_RS08160 -1.3 -7.4 sugar transferase compare
PFLU_RS02625 -1.3 -9.3 ribonuclease R compare
PFLU_RS28325 -1.3 -6.6 energy transducer TonB compare
PFLU_RS01880 -1.3 -6.5 twin-arginine translocase subunit TatC compare
PFLU_RS05690 -1.3 -2.0 Grx4 family monothiol glutaredoxin compare
PFLU_RS18530 -1.3 -4.2 DNA translocase FtsK compare
PFLU_RS07275 -1.3 -2.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS07245 -1.3 -7.0 DegQ family serine endoprotease compare
PFLU_RS08135 -1.2 -5.3 glycosyltransferase compare
PFLU_RS22105 -1.2 -3.8 cysteine synthase CysM compare
PFLU_RS02760 -1.2 -7.5 N-acylglucosamine 2-epimerase compare
PFLU_RS08505 -1.2 -5.5 protease HtpX compare
PFLU_RS00440 -1.2 -9.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS00065 -1.2 -6.3 lysophospholipid acyltransferase compare
PFLU_RS05885 -1.2 -5.6 recombinase RecA compare
PFLU_RS22075 -1.2 -8.0 DUF3108 domain-containing protein compare
PFLU_RS21215 -1.2 -2.4 YheU family protein compare
PFLU_RS22095 -1.2 -9.8 GTP diphosphokinase compare
PFLU_RS09500 -1.2 -1.7 hypothetical protein compare
PFLU_RS03645 -1.2 -7.8 tetratricopeptide repeat protein compare
PFLU_RS26290 -1.2 -1.5 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS24900 -1.2 -5.5 tRNA guanosine(34) transglycosylase Tgt compare
PFLU_RS08190 -1.2 -9.5 polysaccharide biosynthesis protein compare
PFLU_RS08145 -1.2 -6.7 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS10215 -1.1 -6.2 membrane protein compare
PFLU_RS15410 -1.1 -2.3 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS07785 -1.1 -7.6 VacJ family lipoprotein compare
PFLU_RS13120 -1.1 -1.8 hypothetical protein compare
PFLU_RS16435 -1.1 -8.6 glycogen debranching protein GlgX compare
PFLU_RS28320 -1.1 -3.2 glutathione synthase compare
PFLU_RS21260 -1.1 -6.1 DUF3509 domain-containing protein compare
PFLU_RS11930 -1.1 -2.7 biopolymer transporter ExbD compare
PFLU_RS08165 -1.1 -1.7 acyl carrier protein compare
PFLU_RS24720 -1.1 -5.8 trehalose operon repressor compare
PFLU_RS09860 -1.1 -4.0 biotin-dependent carboxyltransferase compare
PFLU_RS29310 -1.1 -2.1 accessory factor UbiK family protein compare
PFLU_RS22600 -1.1 -3.0 RNA polymerase sigma factor SigX compare
PFLU_RS22030 -1.1 -3.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS04440 -1.1 -6.7 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS03665 -1.1 -4.8 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS30510 -1.1 -4.8 glycosyltransferase family 4 protein compare
PFLU_RS16410 -1.1 -8.9 glycogen synthase GlgA compare
PFLU_RS24125 -1.1 -4.9 cold-shock protein compare
PFLU_RS22070 -1.1 -4.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS30520 -1.0 -5.9 ketoacyl-ACP synthase III compare
PFLU_RS18670 -1.0 -2.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS03075 -1.0 -1.4 translation initiation factor Sui1 compare
PFLU_RS04565 -1.0 -1.6 TMEM165/GDT1 family protein compare
PFLU_RS19720 -1.0 -2.7 hypothetical protein compare
PFLU_RS27465 -1.0 -4.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS08065 -1.0 -6.8 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS01885 -1.0 -3.9 Sec-independent protein translocase subunit TatB compare
PFLU_RS02350 -1.0 -5.6 carbamoyltransferase compare
PFLU_RS30525 -1.0 -6.5 SDR family oxidoreductase compare
PFLU_RS28180 -1.0 -6.1 DEAD/DEAH box helicase compare
PFLU_RS15615 -1.0 -4.1 helix-turn-helix domain-containing protein compare
PFLU_RS23920 -1.0 -2.4 septation protein A compare
PFLU_RS25210 -1.0 -4.6 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS00410 -1.0 -6.4 cytochrome c4 compare
PFLU_RS30165 -1.0 -5.8 ParA family protein compare
PFLU_RS26735 -1.0 -5.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS23310 -1.0 -6.7 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS03995 -1.0 -1.1 hypothetical protein compare
PFLU_RS07255 -1.0 -3.7 sulfurtransferase TusA family protein compare
PFLU_RS28420 -1.0 -5.6 thiazole synthase compare
PFLU_RS30530 -0.9 -5.4 acetyltransferase compare
PFLU_RS28820 -0.9 -2.3 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS03585 -0.9 -1.8 hypothetical protein compare
PFLU_RS26535 -0.9 -5.0 thiamine phosphate synthase compare
PFLU_RS21200 -0.9 -6.7 N-acetylglutaminylglutamine amidotransferase compare
PFLU_RS08180 -0.9 -4.2 ketoacyl-ACP synthase III compare
PFLU_RS26530 -0.9 -7.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS29065 -0.9 -1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS13485 -0.9 -7.2 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS22630 -0.9 -7.9 phosphoenolpyruvate synthase compare
PFLU_RS01390 -0.9 -5.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS13665 -0.9 -1.9 MarR family transcriptional regulator compare
PFLU_RS09980 -0.9 -7.5 peptidase S41 compare
PFLU_RS28470 -0.9 -3.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS07725 -0.9 -3.1 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS16865 -0.9 -3.1 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For stress Sodium malate in Pseudomonas fluorescens SBW25-INTG

For stress Sodium malate across organisms