Experiment set10IT052 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS09660 -4.1 -3.9 DNA translocase FtsK compare
BWI76_RS09760 -4.0 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS01210 -3.9 -5.3 tyrosine recombinase XerC compare
BWI76_RS26085 -3.8 -2.9 3-dehydroquinate synthase compare
BWI76_RS07065 -3.7 -8.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS23240 -3.7 -6.2 exonuclease V subunit gamma compare
BWI76_RS09970 -3.6 -8.5 porin OmpA compare
BWI76_RS25215 -3.5 -5.0 phospholipid-binding protein MlaC compare
BWI76_RS25225 -3.5 -4.9 ABC transporter permease compare
BWI76_RS24400 -3.5 -8.9 outer membrane channel protein TolC compare
BWI76_RS23360 -3.4 -4.9 diaminopimelate decarboxylase compare
BWI76_RS23230 -3.4 -5.1 exodeoxyribonuclease V subunit beta compare
BWI76_RS01610 -3.3 -8.5 phosphoribosylamine--glycine ligase compare
BWI76_RS20965 -3.3 -5.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS00400 -3.2 -2.2 glutamine synthetase compare
BWI76_RS07070 -3.1 -6.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS16965 -3.0 -5.1 murein lipoprotein compare
BWI76_RS04645 -2.9 -8.1 3-dehydroquinase compare
BWI76_RS20895 -2.9 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS21265 -2.9 -11.7 phosphoribosylformylglycinamidine synthase compare
BWI76_RS25230 -2.9 -7.7 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS21475 -2.9 -5.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS25220 -2.8 -2.7 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS04240 -2.8 -3.3 thr operon leader peptide compare
BWI76_RS01615 -2.8 -11.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS25645 -2.7 -6.9 shikimate dehydrogenase compare
BWI76_RS26570 -2.7 -4.1 anion permease compare
BWI76_RS00805 -2.6 -7.1 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS09755 -2.6 -7.6 phosphoserine transaminase compare
BWI76_RS20355 -2.6 -2.3 colicin V production protein compare
BWI76_RS21070 -2.5 -3.0 outer membrane protein assembly factor BamB compare
BWI76_RS06775 -2.4 -10.9 multidrug efflux RND transporter permease subunit compare
BWI76_RS02995 -2.4 -6.9 aspartate carbamoyltransferase compare
BWI76_RS23920 -2.4 -4.5 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS20350 -2.3 -6.9 amidophosphoribosyltransferase compare
BWI76_RS09645 -2.3 -2.5 thioredoxin-disulfide reductase compare
BWI76_RS00835 -2.3 -8.8 phosphoenolpyruvate carboxylase compare
BWI76_RS18955 -2.2 -7.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS23365 -2.2 -3.5 LysR family transcriptional regulator compare
BWI76_RS17975 -2.1 -6.0 tail-specific protease compare
BWI76_RS09640 -2.1 -4.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS00785 -2.1 -6.4 cystathionine gamma-synthase compare
BWI76_RS06780 -2.1 -7.3 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS00850 -2.1 -7.8 acetylglutamate kinase compare
BWI76_RS21480 -2.1 -8.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS00990 -2.1 -10.0 ketol-acid reductoisomerase compare
BWI76_RS26075 -2.1 -4.3 DNA adenine methylase compare
BWI76_RS11965 -2.1 -5.4 orotidine-5'-phosphate decarboxylase compare
BWI76_RS04530 -2.0 -2.3 peptidylprolyl isomerase SurA compare
BWI76_RS25335 -2.0 -2.0 stringent starvation protein A compare
BWI76_RS01655 -2.0 -8.4 homoserine O-succinyltransferase compare
BWI76_RS04665 -2.0 -14.3 3-isopropylmalate dehydratase small subunit compare
BWI76_RS21580 -2.0 -2.7 SsrA-binding protein compare
BWI76_RS02410 -1.9 -2.7 EF-P beta-lysylation protein EpmB compare
BWI76_RS17980 -1.9 -3.3 RNA chaperone ProQ compare
BWI76_RS18950 -1.9 -5.4 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS00975 -1.9 -8.6 dihydroxy-acid dehydratase compare
BWI76_RS18930 -1.9 -3.6 histidinol-phosphate transaminase compare
BWI76_RS21345 -1.9 -1.9 sigma-E factor regulatory protein RseB compare
BWI76_RS18940 -1.9 -4.0 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS18135 -1.9 -4.4 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS00845 -1.8 -7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS04465 -1.8 -3.9 carbamoyl-phosphate synthase small subunit compare
BWI76_RS18935 -1.8 -7.1 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04255 -1.8 -7.8 threonine synthase compare
BWI76_RS20475 -1.8 -3.8 phospholipid-binding lipoprotein MlaA compare
BWI76_RS20435 -1.8 -1.3 chorismate synthase compare
BWI76_RS23220 -1.7 -6.8 amino-acid N-acetyltransferase compare
BWI76_RS01200 -1.7 -2.4 diaminopimelate epimerase compare
BWI76_RS00965 -1.7 -1.3 acetolactate synthase 2 small subunit compare
BWI76_RS07740 -1.7 -2.3 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS03010 -1.7 -6.3 ornithine carbamoyltransferase compare
BWI76_RS04675 -1.7 -4.3 3-isopropylmalate dehydrogenase compare
BWI76_RS24285 -1.7 -4.7 cystathionine beta-lyase compare
BWI76_RS11610 -1.7 -2.8 glutamate dehydrogenase compare
BWI76_RS05840 -1.6 -4.8 glutamate 5-kinase compare
BWI76_RS01325 -1.6 -2.5 twin-arginine translocase subunit TatB compare
BWI76_RS25115 -1.6 -5.6 argininosuccinate synthase compare
BWI76_RS04685 -1.6 -6.8 putative leucine operon leader peptide compare
BWI76_RS07725 -1.6 -1.1 iron-enterobactin transporter permease compare
BWI76_RS04160 -1.6 -4.9 phosphoserine phosphatase compare
BWI76_RS04955 -1.6 -2.7 hypoxanthine phosphoribosyltransferase compare
BWI76_RS04670 -1.6 -7.7 3-isopropylmalate dehydratase large subunit compare
BWI76_RS04470 -1.6 -5.4 carbamoyl phosphate synthase large subunit compare
BWI76_RS15115 -1.6 -6.3 MFS transporter compare
BWI76_RS23885 -1.6 -2.0 2-octaprenylphenol hydroxylase compare
BWI76_RS04245 -1.5 -10.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS04680 -1.5 -8.9 2-isopropylmalate synthase compare
BWI76_RS08525 -1.5 -1.6 colicin transporter compare
BWI76_RS18920 -1.5 -3.5 ATP phosphoribosyltransferase compare
BWI76_RS08500 -1.5 -3.1 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS14775 -1.5 -3.0 creatinine amidohydrolase compare
BWI76_RS19845 -1.5 -4.2 phosphatase compare
BWI76_RS18925 -1.5 -3.7 histidinol dehydrogenase compare
BWI76_RS25065 -1.5 -2.2 polyribonucleotide nucleotidyltransferase compare
BWI76_RS00980 -1.4 -6.4 PLP-dependent threonine dehydratase compare
BWI76_RS00345 -1.4 -2.8 protein disulfide oxidoreductase DsbA compare
BWI76_RS19375 -1.4 -2.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS16210 -1.4 -2.3 hypothetical protein compare
BWI76_RS10990 -1.4 -2.6 dihydroorotase compare
BWI76_RS23265 -1.4 -3.3 hypothetical protein compare
BWI76_RS11840 -1.4 -3.1 tryptophan synthase subunit alpha compare
BWI76_RS27390 -1.3 -5.5 ribonuclease PH compare
BWI76_RS01275 -1.3 -6.0 LysR family transcriptional regulator compare
BWI76_RS07645 -1.3 -2.2 short-chain dehydrogenase/reductase compare
BWI76_RS08385 -1.3 -2.9 citrate (Si)-synthase compare
BWI76_RS18140 -1.3 -3.0 zinc ABC transporter permease compare
BWI76_RS08230 -1.3 -2.9 hypothetical protein compare
BWI76_RS08530 -1.3 -3.2 protein TolA compare
BWI76_RS01795 -1.3 -2.3 hypothetical protein compare
BWI76_RS09030 -1.3 -4.4 transpeptidase compare
BWI76_RS04250 -1.3 -3.9 homoserine kinase compare
BWI76_RS01220 -1.3 -6.3 DNA-dependent helicase II compare
BWI76_RS02530 -1.3 -1.6 tRNA dimethylallyltransferase compare
BWI76_RS15660 -1.2 -1.6 hypothetical protein compare
BWI76_RS20440 -1.2 -2.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS09635 -1.2 -2.3 amino acid ABC transporter ATP-binding protein compare
BWI76_RS08275 -1.2 -1.2 LexA regulated protein compare
BWI76_RS25320 -1.2 -5.2 glutamate synthase compare
BWI76_RS26620 -1.2 -1.1 Fe-S biogenesis protein NfuA compare
BWI76_RS26000 -1.2 -5.6 aspartate aminotransferase family protein compare
BWI76_RS09655 -1.2 -3.0 leucine-responsive regulatory protein compare
BWI76_RS26200 -1.2 -5.2 starch synthase compare
BWI76_RS11435 -1.2 -1.4 hypothetical protein compare
BWI76_RS00960 -1.2 -4.1 acetolactate synthase 2 catalytic subunit compare
BWI76_RS25425 -1.2 -1.9 arginine repressor compare
BWI76_RS25315 -1.1 -6.5 glutamate synthase large subunit compare
BWI76_RS16445 -1.1 -2.0 auxiliary transporter membrane fusion protein compare
BWI76_RS08535 -1.1 -2.5 translocation protein TolB compare
BWI76_RS21350 -1.1 -2.0 anti-RNA polymerase sigma factor SigE compare
BWI76_RS08495 -1.1 -2.9 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS22840 -1.1 -1.8 transposase compare
BWI76_RS21465 -1.1 -2.8 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS05835 -1.1 -2.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS01925 -1.1 -6.0 aromatic amino acid aminotransferase compare
BWI76_RS11855 -1.1 -4.9 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS26775 -1.1 -2.8 endo-1,4-D-glucanase compare
BWI76_RS00355 -1.1 -2.9 DNA polymerase I compare
BWI76_RS13820 -1.1 -1.9 hypothetical protein compare
BWI76_RS06240 -1.1 -3.7 branched-chain amino acid transport system 2 carrier protein BrnQ compare
BWI76_RS09910 -1.1 -7.7 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS23970 -1.1 -2.0 mechanosensitive ion channel protein MscS compare
BWI76_RS07730 -1.0 -1.3 iron-enterobactin transporter membrane protein compare
BWI76_RS27820 -1.0 -1.9 ilvB operon leader peptide IvbL compare
BWI76_RS27605 -1.0 -2.0 hypothetical protein compare
BWI76_RS27385 -1.0 -3.1 orotate phosphoribosyltransferase compare
BWI76_RS27875 -1.0 -1.2 membrane protein compare
BWI76_RS06295 -1.0 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS18130 -1.0 -3.2 zinc ABC transporter substrate-binding protein compare
BWI76_RS03665 -1.0 -2.1 ABC transporter ATP-binding protein compare
BWI76_RS17290 -1.0 -4.2 formyltetrahydrofolate deformylase compare
BWI76_RS04715 -1.0 -1.9 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS21310 -1.0 -1.1 DNA repair protein RecO compare
BWI76_RS15350 -1.0 -1.2 hypothetical protein compare
BWI76_RS00855 -1.0 -4.0 argininosuccinate lyase compare
BWI76_RS14670 -1.0 -2.3 hypothetical protein compare
BWI76_RS27680 -1.0 -2.1 TetR family transcriptional regulator compare
BWI76_RS01885 -1.0 -1.3 CsbD family protein compare
BWI76_RS17400 -1.0 -1.3 transporter compare
BWI76_RS24600 -1.0 -4.3 dihydroxyacetone kinase compare
BWI76_RS12330 -1.0 -2.9 hypothetical protein compare
BWI76_RS01800 -1.0 -2.4 glucose-6-phosphate isomerase compare
BWI76_RS10835 -0.9 -1.5 hypothetical protein compare
BWI76_RS26665 -0.9 -1.4 DNA-binding response regulator compare
BWI76_RS15835 -0.9 -1.3 hypothetical protein compare
BWI76_RS27310 -0.9 -4.0 glycosyltransferase compare
BWI76_RS20160 -0.9 -1.5 NADH-quinone oxidoreductase subunit H compare
BWI76_RS19035 -0.9 -4.2 dTDP-rhamnosyl transferase compare
BWI76_RS09190 -0.9 -2.7 hypothetical protein compare
BWI76_RS24275 -0.9 -2.6 biopolymer transport protein ExbD compare
BWI76_RS11515 -0.9 -1.2 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS25240 -0.9 -4.0 D-arabinose 5-phosphate isomerase compare
BWI76_RS21450 -0.9 -2.1 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS04510 -0.9 -1.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS19010 -0.9 -1.7 polysaccharide pyruvyl transferase yvff compare
BWI76_RS11190 -0.9 -2.3 putative TetR/AcrR family transcriptional regulatory protein compare
BWI76_RS05015 -0.9 -1.7 transcriptional regulator compare
BWI76_RS05450 -0.9 -1.0 ribonuclease HI compare
BWI76_RS04100 -0.9 -2.4 peptide chain release factor 3 compare
BWI76_RS16525 -0.9 -2.6 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS04305 -0.9 -0.8 molecular chaperone DnaJ compare
BWI76_RS05200 -0.9 -1.8 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS16215 -0.9 -2.7 hypothetical protein compare
BWI76_RS20155 -0.9 -1.7 NADH-quinone oxidoreductase subunit I compare
BWI76_RS20650 -0.8 -1.2 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS26670 -0.8 -4.9 two-component sensor histidine kinase compare
BWI76_RS10930 -0.8 -3.9 glucan biosynthesis protein G compare
BWI76_RS15110 -0.8 -6.5 putative excinuclease ABC subunit A compare
BWI76_RS15640 -0.8 -3.9 hypothetical protein compare
BWI76_RS27165 -0.8 -2.7 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS08720 -0.8 -1.8 imidazolonepropionase compare
BWI76_RS10820 -0.8 -3.4 iron uptake system protein EfeO compare
BWI76_RS08380 -0.8 -0.7 endonuclease VIII compare
BWI76_RS24080 -0.8 -1.4 DUF179 domain-containing protein compare
BWI76_RS13980 -0.8 -1.4 hypothetical protein compare
BWI76_RS01065 -0.8 -2.4 ATP-dependent RNA helicase RhlB compare
BWI76_RS11850 -0.8 -5.5 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS19200 -0.8 -2.3 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS27290 -0.8 -4.0 hypothetical protein compare
BWI76_RS18770 -0.8 -1.1 DNA gyrase inhibitor compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms