Experiment set10IT051 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium malate (C) and Ammonium chloride (N); with TAPS; with PEG

200 most important genes:

  gene name fitness t score description  
PFLU_RS23380 -4.9 -3.4 HAD-IB family hydrolase compare
PFLU_RS29480 -4.5 -13.1 exodeoxyribonuclease III compare
PFLU_RS28645 -4.4 -20.1 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS01605 -4.3 -12.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20580 -4.2 -16.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20565 -4.2 -18.7 3-isopropylmalate dehydrogenase compare
PFLU_RS04470 -4.2 -15.2 histidinol dehydrogenase compare
PFLU_RS01620 -4.1 -12.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS00175 -4.1 -11.4 tryptophan synthase subunit alpha compare
PFLU_RS28535 -4.0 -20.6 dihydroxy-acid dehydratase compare
PFLU_RS20575 -3.9 -10.0 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28390 -3.8 -15.0 methionine biosynthesis protein MetW compare
PFLU_RS09835 -3.8 -17.0 LysR family transcriptional regulator compare
PFLU_RS04465 -3.7 -12.5 ATP phosphoribosyltransferase compare
PFLU_RS20540 -3.7 -15.2 phosphoribosylanthranilate isomerase compare
PFLU_RS01900 -3.6 -11.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS25640 -3.6 -17.4 ketol-acid reductoisomerase compare
PFLU_RS28385 -3.6 -17.8 homoserine O-acetyltransferase compare
PFLU_RS01625 -3.6 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28655 -3.6 -18.6 HAD family hydrolase compare
PFLU_RS08660 -3.5 -2.4 heme exporter protein CcmD compare
PFLU_RS29780 -3.5 -9.4 acyl-CoA thioesterase compare
PFLU_RS24765 -3.5 -22.0 2-isopropylmalate synthase compare
PFLU_RS08655 -3.4 -2.4 heme ABC transporter permease compare
PFLU_RS27370 -3.4 -16.3 anthranilate phosphoribosyltransferase compare
PFLU_RS27365 -3.4 -11.9 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS25760 -3.4 -16.5 glucose-6-phosphate isomerase compare
PFLU_RS28165 -3.3 -15.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS10430 -3.3 -5.0 peptidase compare
PFLU_RS25645 -3.3 -4.9 acetolactate synthase small subunit compare
PFLU_RS00180 -3.3 -10.8 tryptophan synthase subunit beta compare
PFLU_RS20510 -3.2 -17.4 O-succinylhomoserine sulfhydrylase compare
PFLU_RS22740 -3.2 -4.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS23065 -3.2 -12.8 phosphate acyltransferase PlsX compare
PFLU_RS08650 -3.2 -2.2 heme exporter protein CcmB compare
PFLU_RS02590 -3.1 -11.8 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS09055 -3.1 -5.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS27475 -3.0 -9.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS02490 -3.0 -14.5 phosphoserine phosphatase SerB compare
PFLU_RS10765 -2.9 -14.4 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS25360 -2.9 -8.7 glutamate 5-kinase compare
PFLU_RS20515 -2.9 -5.5 amidophosphoribosyltransferase compare
PFLU_RS25715 -2.9 -12.3 RNA polymerase-binding protein DksA compare
PFLU_RS07230 -2.8 -12.7 RNA polymerase sigma factor RpoE compare
PFLU_RS06310 -2.8 -9.9 sigma E protease regulator RseP compare
PFLU_RS18505 -2.8 -13.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS14665 -2.7 -11.1 helix-turn-helix transcriptional regulator compare
PFLU_RS09865 -2.7 -15.2 allantoin permease compare
PFLU_RS15620 -2.7 -8.2 phenylacetaldoxime dehydratase family protein compare
PFLU_RS03970 -2.7 -12.0 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS02275 -2.7 -3.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS22595 -2.6 -3.1 OmpA family protein compare
PFLU_RS08670 -2.6 -4.3 heme lyase CcmF/NrfE family subunit compare
PFLU_RS04140 -2.6 -4.5 response regulator transcription factor compare
PFLU_RS02565 -2.6 -8.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS25755 -2.6 -5.4 pantoate--beta-alanine ligase compare
PFLU_RS29360 -2.6 -2.5 cytochrome c5 family protein compare
PFLU_RS09840 -2.5 -11.4 5-oxoprolinase subunit PxpA compare
PFLU_RS01285 -2.5 -3.4 HAMP domain-containing protein compare
PFLU_RS05690 -2.5 -3.4 Grx4 family monothiol glutaredoxin compare
PFLU_RS13540 -2.5 -7.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS14550 -2.5 -9.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS25595 -2.5 -4.0 exodeoxyribonuclease V subunit gamma compare
PFLU_RS28695 -2.4 -5.9 phosphoglycerate dehydrogenase compare
PFLU_RS08665 -2.4 -2.8 cytochrome c maturation protein CcmE compare
PFLU_RS11475 -2.3 -2.2 histidine kinase compare
PFLU_RS08165 -2.3 -3.8 acyl carrier protein compare
PFLU_RS12980 -2.3 -11.0 nitrite/sulfite reductase compare
PFLU_RS29095 -2.3 -19.7 polyphosphate kinase 1 compare
PFLU_RS23115 -2.3 -15.1 dicarboxylate/amino acid:cation symporter compare
PFLU_RS18410 -2.2 -5.7 response regulator compare
PFLU_RS20290 -2.2 -3.3 integration host factor subunit alpha compare
PFLU_RS08675 -2.2 -3.6 DsbE family thiol:disulfide interchange protein compare
PFLU_RS05655 -2.2 -6.2 DeoR/GlpR family transcriptional regulator compare
PFLU_RS09845 -2.1 -2.8 biotin carboxyl carrier domain-containing protein compare
PFLU_RS23510 -2.1 -14.4 5-oxoprolinase subunit PxpA compare
PFLU_RS22395 -2.1 -7.1 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS02580 -2.1 -12.9 FtsH protease activity modulator HflK compare
PFLU_RS22380 -2.1 -7.2 sulfite exporter TauE/SafE family protein compare
PFLU_RS01895 -2.0 -6.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS03880 -2.0 -13.1 ATP-dependent chaperone ClpB compare
PFLU_RS04165 -2.0 -8.6 cell division protein ZapE compare
PFLU_RS01400 -2.0 -12.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS07755 -2.0 -7.9 heavy metal sensor histidine kinase compare
PFLU_RS19015 -1.9 -7.1 anti-sigma factor compare
PFLU_RS23070 -1.9 -1.4 50S ribosomal protein L32 compare
PFLU_RS24025 -1.9 -9.9 quinolinate synthase NadA compare
PFLU_RS12975 -1.9 -5.4 DUF934 domain-containing protein compare
PFLU_RS04430 -1.8 -8.7 ATP-binding cassette domain-containing protein compare
PFLU_RS25875 -1.8 -5.4 transcription elongation factor GreA compare
PFLU_RS09855 -1.8 -6.7 allophanate hydrolase subunit 1 compare
PFLU_RS02585 -1.7 -7.7 protease modulator HflC compare
PFLU_RS19550 -1.7 -1.8 ABC transporter ATP-binding protein compare
PFLU_RS19165 -1.7 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS22370 -1.7 -10.2 cadmium-translocating P-type ATPase compare
PFLU_RS29515 -1.7 -10.3 RidA family protein compare
PFLU_RS00415 -1.7 -2.3 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25585 -1.7 -3.9 exodeoxyribonuclease V subunit alpha compare
PFLU_RS08185 -1.7 -9.4 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS25800 -1.7 -8.7 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS28905 -1.7 -9.7 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS01645 -1.7 -10.0 S41 family peptidase compare
PFLU_RS07645 -1.6 -4.1 hypothetical protein compare
PFLU_RS09535 -1.6 -1.6 TIGR03750 family conjugal transfer protein compare
PFLU_RS04205 -1.6 -9.2 cytochrome c1 compare
PFLU_RS21495 -1.6 -4.4 TlpA family protein disulfide reductase compare
PFLU_RS24555 -1.6 -5.7 thioredoxin fold domain-containing protein compare
PFLU_RS04565 -1.6 -1.8 TMEM165/GDT1 family protein compare
PFLU_RS08410 -1.6 -7.9 HTH-type transcriptional regulator CysB compare
PFLU_RS02625 -1.6 -10.1 ribonuclease R compare
PFLU_RS14670 -1.5 -3.3 GNAT family N-acetyltransferase compare
PFLU_RS22375 -1.5 -8.4 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS04200 -1.5 -10.3 cytochrome bc complex cytochrome b subunit compare
PFLU_RS01995 -1.5 -11.4 malate dehydrogenase compare
PFLU_RS30160 -1.5 -2.7 ParB/RepB/Spo0J family partition protein compare
PFLU_RS08505 -1.5 -6.1 protease HtpX compare
PFLU_RS04070 -1.4 -3.9 peptide chain release factor 3 compare
PFLU_RS08155 -1.4 -4.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS30505 -1.4 -6.0 hypothetical protein compare
PFLU_RS07785 -1.4 -8.8 VacJ family lipoprotein compare
PFLU_RS00065 -1.4 -7.0 lysophospholipid acyltransferase compare
PFLU_RS07245 -1.4 -7.0 DegQ family serine endoprotease compare
PFLU_RS24205 -1.4 -2.6 DNA binding protein compare
PFLU_RS22075 -1.4 -8.8 DUF3108 domain-containing protein compare
PFLU_RS29310 -1.4 -2.3 accessory factor UbiK family protein compare
PFLU_RS01880 -1.4 -6.5 twin-arginine translocase subunit TatC compare
PFLU_RS03645 -1.3 -8.9 tetratricopeptide repeat protein compare
PFLU_RS27465 -1.3 -4.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS28325 -1.3 -6.6 energy transducer TonB compare
PFLU_RS07255 -1.3 -4.4 sulfurtransferase TusA family protein compare
PFLU_RS26770 -1.3 -9.6 DedA family protein compare
PFLU_RS25750 -1.3 -5.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS04440 -1.3 -7.9 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS00440 -1.3 -10.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS24125 -1.3 -5.6 cold-shock protein compare
PFLU_RS18655 -1.3 -2.8 NADH-quinone oxidoreductase subunit J compare
PFLU_RS08125 -1.3 -2.9 integration host factor subunit beta compare
PFLU_RS22070 -1.2 -4.7 phosphoribosylglycinamide formyltransferase compare
PFLU_RS22105 -1.2 -3.8 cysteine synthase CysM compare
PFLU_RS30165 -1.2 -6.5 ParA family protein compare
PFLU_RS08190 -1.2 -9.8 polysaccharide biosynthesis protein compare
PFLU_RS18530 -1.2 -4.4 DNA translocase FtsK compare
PFLU_RS05020 -1.2 -2.0 DUF1120 domain-containing protein compare
PFLU_RS13035 -1.2 -3.4 cobalamin biosynthesis protein CobW compare
PFLU_RS08160 -1.2 -6.3 sugar transferase compare
PFLU_RS30630 -1.2 -2.2 hypothetical protein compare
PFLU_RS23310 -1.1 -6.9 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS09860 -1.1 -4.6 biotin-dependent carboxyltransferase compare
PFLU_RS15380 -1.1 -4.1 DUF1652 domain-containing protein compare
PFLU_RS24720 -1.1 -6.1 trehalose operon repressor compare
PFLU_RS08145 -1.1 -6.1 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS18635 -1.1 -3.4 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS01320 -1.1 -6.9 phosphoenolpyruvate carboxykinase compare
PFLU_RS04435 -1.1 -5.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS15615 -1.1 -4.2 helix-turn-helix domain-containing protein compare
PFLU_RS02350 -1.1 -5.2 carbamoyltransferase compare
PFLU_RS16435 -1.1 -8.0 glycogen debranching protein GlgX compare
PFLU_RS22365 -1.1 -5.0 membrane protein compare
PFLU_RS26735 -1.1 -5.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS04445 -1.1 -5.2 ABC transporter substrate-binding protein compare
PFLU_RS21260 -1.1 -5.3 DUF3509 domain-containing protein compare
PFLU_RS13485 -1.1 -8.3 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS03665 -1.0 -4.7 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS16410 -1.0 -8.9 glycogen synthase GlgA compare
PFLU_RS10215 -1.0 -4.9 membrane protein compare
PFLU_RS08490 -1.0 -1.4 DEAD/DEAH box helicase compare
PFLU_RS07665 -1.0 -2.0 type I DNA topoisomerase compare
PFLU_RS07695 -1.0 -2.7 beta-N-acetylhexosaminidase compare
PFLU_RS08065 -1.0 -6.5 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS23730 -1.0 -7.6 MurR/RpiR family transcriptional regulator compare
PFLU_RS08700 -1.0 -6.9 MFS transporter compare
PFLU_RS22095 -1.0 -8.0 GTP diphosphokinase compare
PFLU_RS28180 -1.0 -6.0 DEAD/DEAH box helicase compare
PFLU_RS11885 -1.0 -1.8 type II secretion system protein M compare
PFLU_RS07725 -1.0 -3.4 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS28420 -1.0 -5.7 thiazole synthase compare
PFLU_RS26535 -1.0 -5.0 thiamine phosphate synthase compare
PFLU_RS17920 -0.9 -2.0 acyltransferase compare
PFLU_RS25225 -0.9 -5.5 disulfide bond formation protein B compare
PFLU_RS13895 -0.9 -1.5 helix-turn-helix transcriptional regulator compare
PFLU_RS21425 -0.9 -2.5 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS18620 -0.9 -4.2 NADH-quinone oxidoreductase subunit B compare
PFLU_RS04650 -0.9 -7.3 ABC transporter substrate-binding protein compare
PFLU_RS05880 -0.9 -3.2 CinA family protein compare
PFLU_RS01835 -0.9 -7.0 glucan biosynthesis protein G compare
PFLU_RS22630 -0.9 -7.5 phosphoenolpyruvate synthase compare
PFLU_RS01390 -0.9 -5.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS26530 -0.9 -6.8 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS07275 -0.9 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS18420 -0.9 -2.2 hypothetical protein compare
PFLU_RS21200 -0.9 -6.3 N-acetylglutaminylglutamine amidotransferase compare
PFLU_RS02430 -0.9 -6.9 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS09980 -0.9 -7.3 peptidase S41 compare
PFLU_RS21985 -0.9 -2.8 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS31530 -0.9 -1.1 transposase compare
PFLU_RS18640 -0.9 -2.9 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS01840 -0.9 -7.4 glucans biosynthesis glucosyltransferase MdoH compare
PFLU_RS02760 -0.9 -5.3 N-acylglucosamine 2-epimerase compare
PFLU_RS04220 -0.9 -5.0 FadR family transcriptional regulator compare
PFLU_RS16425 -0.9 -6.4 malto-oligosyltrehalose synthase compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sodium malate in Pseudomonas fluorescens SBW25-INTG

For stress Sodium malate across organisms