Experiment set10IT050 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS01210 -4.9 -4.5 tyrosine recombinase XerC compare
BWI76_RS09660 -4.9 -3.4 DNA translocase FtsK compare
BWI76_RS27305 -4.7 -8.5 glycosyl transferase compare
BWI76_RS24400 -4.7 -4.6 outer membrane channel protein TolC compare
BWI76_RS23360 -4.6 -5.4 diaminopimelate decarboxylase compare
BWI76_RS06765 -4.6 -4.3 transcriptional regulator compare
BWI76_RS26085 -4.2 -3.5 3-dehydroquinate synthase compare
BWI76_RS23920 -3.9 -6.1 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS23480 -3.7 -12.2 EAL domain-containing protein compare
BWI76_RS27290 -3.5 -10.3 hypothetical protein compare
BWI76_RS09755 -3.5 -7.0 phosphoserine transaminase compare
BWI76_RS23240 -3.4 -5.2 exonuclease V subunit gamma compare
BWI76_RS00345 -3.4 -3.3 protein disulfide oxidoreductase DsbA compare
BWI76_RS07065 -3.4 -6.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS17805 -3.4 -1.9 membrane protein compare
BWI76_RS26665 -3.3 -3.8 DNA-binding response regulator compare
BWI76_RS09760 -3.3 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS18950 -3.1 -2.9 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS08605 -3.1 -2.7 phosphoglyceromutase compare
BWI76_RS15660 -3.0 -2.1 hypothetical protein compare
BWI76_RS23230 -3.0 -4.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS20355 -2.9 -3.5 colicin V production protein compare
BWI76_RS25225 -2.8 -6.4 ABC transporter permease compare
BWI76_RS21475 -2.7 -7.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS04160 -2.7 -8.1 phosphoserine phosphatase compare
BWI76_RS01330 -2.7 -3.4 twin-arginine translocase subunit TatC compare
BWI76_RS04645 -2.5 -5.6 3-dehydroquinase compare
BWI76_RS06770 -2.5 -11.2 Hha toxicity attenuator compare
BWI76_RS05200 -2.4 -2.8 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS18920 -2.3 -3.1 ATP phosphoribosyltransferase compare
BWI76_RS18940 -2.3 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS01615 -2.2 -9.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS25920 -2.2 -1.9 peptidylprolyl isomerase compare
BWI76_RS20965 -2.2 -4.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS20435 -2.2 -1.3 chorismate synthase compare
BWI76_RS00400 -2.1 -2.0 glutamine synthetase compare
BWI76_RS09970 -2.1 -6.4 porin OmpA compare
BWI76_RS05840 -2.1 -4.4 glutamate 5-kinase compare
BWI76_RS26395 -2.0 -4.4 cell division protein FtsE compare
BWI76_RS07070 -2.0 -5.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS18935 -2.0 -7.1 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04715 -2.0 -2.1 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS08530 -1.9 -2.7 protein TolA compare
BWI76_RS18955 -1.9 -6.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04255 -1.9 -6.7 threonine synthase compare
BWI76_RS25115 -1.9 -7.2 argininosuccinate synthase compare
BWI76_RS04465 -1.9 -4.8 carbamoyl-phosphate synthase small subunit compare
BWI76_RS20650 -1.9 -1.3 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS00965 -1.9 -1.2 acetolactate synthase 2 small subunit compare
BWI76_RS08520 -1.9 -3.1 colicin transporter TolQ compare
BWI76_RS04470 -1.9 -7.6 carbamoyl phosphate synthase large subunit compare
BWI76_RS20350 -1.9 -4.7 amidophosphoribosyltransferase compare
BWI76_RS27310 -1.8 -7.5 glycosyltransferase compare
BWI76_RS02410 -1.8 -2.4 EF-P beta-lysylation protein EpmB compare
BWI76_RS26670 -1.8 -7.9 two-component sensor histidine kinase compare
BWI76_RS25230 -1.8 -4.8 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS18925 -1.8 -4.3 histidinol dehydrogenase compare
BWI76_RS04530 -1.8 -1.7 peptidylprolyl isomerase SurA compare
BWI76_RS21265 -1.8 -9.0 phosphoribosylformylglycinamidine synthase compare
BWI76_RS08525 -1.7 -3.8 colicin transporter compare
BWI76_RS18135 -1.7 -4.4 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS09635 -1.7 -2.5 amino acid ABC transporter ATP-binding protein compare
BWI76_RS18930 -1.7 -4.2 histidinol-phosphate transaminase compare
BWI76_RS02530 -1.7 -2.6 tRNA dimethylallyltransferase compare
BWI76_RS17720 -1.7 -1.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS00845 -1.6 -6.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS01610 -1.6 -6.6 phosphoribosylamine--glycine ligase compare
BWI76_RS26570 -1.6 -2.6 anion permease compare
BWI76_RS17190 -1.6 -1.7 TonB system transport protein TonB compare
BWI76_RS25215 -1.6 -5.0 phospholipid-binding protein MlaC compare
BWI76_RS02995 -1.6 -6.8 aspartate carbamoyltransferase compare
BWI76_RS04250 -1.6 -7.2 homoserine kinase compare
BWI76_RS00835 -1.6 -8.1 phosphoenolpyruvate carboxylase compare
BWI76_RS15435 -1.6 -1.9 hypothetical protein compare
BWI76_RS06240 -1.6 -3.9 branched-chain amino acid transport system 2 carrier protein BrnQ compare
BWI76_RS18140 -1.6 -5.0 zinc ABC transporter permease compare
BWI76_RS26460 -1.5 -4.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS01885 -1.5 -1.5 CsbD family protein compare
BWI76_RS15835 -1.5 -1.2 hypothetical protein compare
BWI76_RS23515 -1.5 -3.0 antibiotic biosynthesis monooxygenase compare
BWI76_RS19805 -1.5 -2.6 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS26620 -1.5 -1.1 Fe-S biogenesis protein NfuA compare
BWI76_RS14670 -1.5 -2.3 hypothetical protein compare
BWI76_RS25505 -1.5 -5.9 RNase E specificity factor CsrD compare
BWI76_RS25335 -1.5 -3.7 stringent starvation protein A compare
BWI76_RS23365 -1.5 -4.5 LysR family transcriptional regulator compare
BWI76_RS00720 -1.5 -1.9 DNA-binding response regulator compare
BWI76_RS19310 -1.5 -2.5 ABC transporter permease compare
BWI76_RS13560 -1.5 -1.3 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS20895 -1.5 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS16715 -1.4 -8.3 hypothetical protein compare
BWI76_RS12420 -1.4 -1.3 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS23885 -1.4 -1.6 2-octaprenylphenol hydroxylase compare
BWI76_RS23265 -1.4 -2.9 hypothetical protein compare
BWI76_RS00855 -1.4 -5.9 argininosuccinate lyase compare
BWI76_RS26390 -1.4 -2.1 cell division protein FtsX compare
BWI76_RS15830 -1.4 -3.5 hypothetical protein compare
BWI76_RS15060 -1.4 -3.8 MarR family transcriptional regulator compare
BWI76_RS25220 -1.4 -2.5 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS16485 -1.4 -1.9 ribonuclease T compare
BWI76_RS26890 -1.4 -1.4 hypothetical protein compare
BWI76_RS15850 -1.3 -2.4 DUF1317 domain-containing protein compare
BWI76_RS01325 -1.3 -2.6 twin-arginine translocase subunit TatB compare
BWI76_RS02180 -1.3 -1.4 hypothetical protein compare
BWI76_RS03010 -1.3 -5.5 ornithine carbamoyltransferase compare
BWI76_RS00850 -1.3 -5.8 acetylglutamate kinase compare
BWI76_RS16000 -1.3 -1.5 multidrug transporter subunit MdtI compare
BWI76_RS01795 -1.3 -1.9 hypothetical protein compare
BWI76_RS21350 -1.3 -3.4 anti-RNA polymerase sigma factor SigE compare
BWI76_RS10815 -1.3 -3.9 iron permease compare
BWI76_RS06775 -1.3 -7.2 multidrug efflux RND transporter permease subunit compare
BWI76_RS18385 -1.3 -1.2 hypothetical protein compare
BWI76_RS05790 -1.3 -1.5 phage DNA-binding protein compare
BWI76_RS24595 -1.3 -4.2 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS21480 -1.3 -4.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS16995 -1.3 -5.1 Fe-S cluster assembly protein SufB compare
BWI76_RS20730 -1.3 -1.6 hypothetical protein compare
BWI76_RS12090 -1.3 -2.7 HNH endonuclease compare
BWI76_RS15115 -1.3 -4.2 MFS transporter compare
BWI76_RS21450 -1.3 -2.2 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS04670 -1.3 -5.0 3-isopropylmalate dehydratase large subunit compare
BWI76_RS15680 -1.2 -3.0 hypothetical protein compare
BWI76_RS27915 -1.2 -2.5 YceK/YidQ family lipoprotein compare
BWI76_RS26200 -1.2 -4.0 starch synthase compare
BWI76_RS23485 -1.2 -5.4 hypothetical protein compare
BWI76_RS19845 -1.2 -3.4 phosphatase compare
BWI76_RS18240 -1.2 -1.9 L-arabinose ABC transporter permease AraH compare
BWI76_RS06490 -1.2 -4.9 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS15650 -1.2 -3.7 gp5 compare
BWI76_RS00975 -1.2 -5.8 dihydroxy-acid dehydratase compare
BWI76_RS05835 -1.2 -1.2 gamma-glutamyl-phosphate reductase compare
BWI76_RS09640 -1.2 -2.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS24290 -1.2 -1.9 membrane protein compare
BWI76_RS04665 -1.2 -8.7 3-isopropylmalate dehydratase small subunit compare
BWI76_RS25645 -1.1 -4.6 shikimate dehydrogenase compare
BWI76_RS04100 -1.1 -2.7 peptide chain release factor 3 compare
BWI76_RS20475 -1.1 -3.6 phospholipid-binding lipoprotein MlaA compare
BWI76_RS05175 -1.1 -8.7 dGTPase compare
BWI76_RS19035 -1.1 -3.6 dTDP-rhamnosyl transferase compare
BWI76_RS20440 -1.1 -2.9 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS21580 -1.1 -1.1 SsrA-binding protein compare
BWI76_RS05260 -1.1 -1.3 chaperone compare
BWI76_RS19920 -1.1 -6.2 hybrid sensor histidine kinase/response regulator compare
BWI76_RS23220 -1.1 -4.3 amino-acid N-acetyltransferase compare
BWI76_RS21345 -1.1 -2.2 sigma-E factor regulatory protein RseB compare
BWI76_RS14805 -1.1 -1.8 hypothetical protein compare
BWI76_RS19215 -1.1 -1.7 proline-specific peptidase compare
BWI76_RS20150 -1.1 -1.4 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS17000 -1.1 -2.2 Fe-S cluster assembly scaffold SufA compare
BWI76_RS23475 -1.0 -6.8 helix-turn-helix transcriptional regulator compare
BWI76_RS01790 -1.0 -5.6 lysine-sensitive aspartokinase 3 compare
BWI76_RS12950 -1.0 -2.2 acriflavin resistance protein AcrA compare
BWI76_RS19935 -1.0 -1.6 hypothetical protein compare
BWI76_RS18715 -1.0 -4.4 hypothetical protein compare
BWI76_RS09655 -1.0 -3.1 leucine-responsive regulatory protein compare
BWI76_RS06465 -1.0 -1.5 IclR family transcriptional regulator compare
BWI76_RS09870 -1.0 -3.4 aromatic amino acid aminotransferase compare
BWI76_RS12790 -1.0 -1.3 lactate dehydrogenase compare
BWI76_RS24605 -1.0 -4.8 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS21310 -1.0 -1.0 DNA repair protein RecO compare
BWI76_RS04955 -1.0 -1.8 hypoxanthine phosphoribosyltransferase compare
BWI76_RS09520 -1.0 -1.9 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS11515 -1.0 -1.4 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS00760 -1.0 -2.2 cell division protein FtsN compare
BWI76_RS19840 -1.0 -0.9 hypothetical protein compare
BWI76_RS04245 -1.0 -5.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS04570 -1.0 -3.7 RNA polymerase-associated protein RapA compare
BWI76_RS07605 -1.0 -2.4 N-acetyltransferase GCN5 compare
BWI76_RS21000 -1.0 -2.3 exopolyphosphatase compare
BWI76_RS21465 -1.0 -2.4 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS06780 -1.0 -3.0 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS19850 -1.0 -2.0 tRNA-Pro compare
BWI76_RS16975 -1.0 -3.4 cysteine desufuration protein SufE compare
BWI76_RS07780 -1.0 -1.0 hypothetical protein compare
BWI76_RS08980 -1.0 -1.1 DNA starvation/stationary phase protection protein compare
BWI76_RS24580 -0.9 -3.6 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS23520 -0.9 -1.1 hypothetical protein compare
BWI76_RS24885 -0.9 -1.3 PTS galactitol transporter subunit IIB compare
BWI76_RS14390 -0.9 -1.8 hypothetical protein compare
BWI76_RS01080 -0.9 -4.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS15840 -0.9 -2.9 prophage protein compare
BWI76_RS24600 -0.9 -1.9 dihydroxyacetone kinase compare
BWI76_RS17110 -0.9 -1.3 vitamin B12 ABC transporter permease BtuC compare
BWI76_RS07865 -0.9 -1.8 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS20160 -0.9 -1.6 NADH-quinone oxidoreductase subunit H compare
BWI76_RS05070 -0.9 -1.3 type II secretion system protein GspH compare
BWI76_RS05655 -0.9 -2.6 hypothetical protein compare
BWI76_RS21165 -0.9 -1.2 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS17400 -0.9 -1.1 transporter compare
BWI76_RS00010 -0.9 -3.4 DNA replication and repair protein RecF compare
BWI76_RS15110 -0.9 -6.2 putative excinuclease ABC subunit A compare
BWI76_RS17780 -0.9 -2.5 septum formation inhibitor compare
BWI76_RS15565 -0.9 -3.7 hypothetical protein compare
BWI76_RS15675 -0.9 -4.8 hypothetical protein compare
BWI76_RS11965 -0.9 -2.5 orotidine-5'-phosphate decarboxylase compare
BWI76_RS16920 -0.9 -1.4 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS05355 -0.9 -1.8 methionine ABC transporter substrate-binding protein MetQ compare
BWI76_RS09050 -0.9 -1.2 MFS transporter compare
BWI76_RS19870 -0.9 -1.9 malate:quinone oxidoreductase compare
BWI76_RS20360 -0.9 -0.9 cell division protein DedD compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms