Experiment set10IT050 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS07465 +6.7 31.7 TetR family transcriptional regulator compare
BWI76_RS22120 +6.6 51.4 glutamate--cysteine ligase compare
BWI76_RS00140 +6.4 12.3 phosphate transport system regulator PhoU compare
BWI76_RS24075 +6.2 24.3 glutathione synthase compare
BWI76_RS27675 +5.8 33.6 EmrB/QacA family drug resistance transporter compare
BWI76_RS26685 +5.4 22.3 glutathione-disulfide reductase compare
BWI76_RS01070 +5.3 31.2 thiol reductase thioredoxin compare
BWI76_RS20995 +5.1 34.0 RNA degradosome polyphosphate kinase compare
BWI76_RS20640 +4.9 17.7 cysteine synthase A compare
BWI76_RS26095 +3.0 4.1 shikimate kinase compare
BWI76_RS09645 +2.9 7.9 thioredoxin-disulfide reductase compare
BWI76_RS22090 +2.5 3.5 transcriptional regulator compare
BWI76_RS06785 +2.5 10.2 DNA-binding transcriptional repressor AcrR compare
BWI76_RS10305 +2.1 7.0 transposase compare
BWI76_RS21075 +2.1 2.4 membrane protein compare
BWI76_RS19330 +1.9 2.2 HAD family hydrolase compare
BWI76_RS08395 +1.8 4.9 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS01890 +1.8 4.9 transcriptional regulator Zur compare
BWI76_RS23895 +1.7 2.7 Xaa-Pro aminopeptidase compare
BWI76_RS05440 +1.7 8.5 hydroxyacylglutathione hydrolase compare
BWI76_RS00865 +1.6 9.8 DNA-binding transcriptional regulator OxyR compare
BWI76_RS22815 +1.6 11.3 hybrid sensor histidine kinase/response regulator compare
BWI76_RS17915 +1.6 6.2 membrane protein compare
BWI76_RS22420 +1.6 2.6 LacI family transcriptional regulator compare
BWI76_RS26185 +1.4 4.0 thiosulfate sulfurtransferase compare
BWI76_RS16805 +1.4 2.9 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS12170 +1.4 1.4 hypothetical protein compare
BWI76_RS00180 +1.4 3.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS11430 +1.4 2.0 lipoprotein compare
BWI76_RS20380 +1.4 1.8 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS18335 +1.3 8.4 DNA-binding response regulator compare
BWI76_RS08405 +1.3 3.5 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS24925 +1.3 1.7 DnaA initiator-associating protein DiaA compare
BWI76_RS13240 +1.2 1.9 hypothetical protein compare
BWI76_RS17910 +1.2 5.2 hypothetical protein compare
BWI76_RS11435 +1.2 1.7 hypothetical protein compare
BWI76_RS04525 +1.2 2.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS15190 +1.2 6.6 GGDEF domain-containing protein compare
BWI76_RS13685 +1.1 2.1 IclR family transcriptional regulator compare
BWI76_RS11820 +1.1 1.9 short-chain dehydrogenase/reductase SDR compare
BWI76_RS14075 +1.1 1.7 TetR family transcriptional regulator compare
BWI76_RS01585 +1.1 4.9 transcriptional regulator compare
BWI76_RS07185 +1.1 1.1 hypothetical protein compare
BWI76_RS05515 +1.1 3.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
BWI76_RS17975 +1.1 3.3 tail-specific protease compare
BWI76_RS19710 +1.1 2.2 NupC/NupG family nucleoside CNT transporter compare
BWI76_RS08275 +1.1 1.9 LexA regulated protein compare
BWI76_RS17980 +1.1 3.7 RNA chaperone ProQ compare
BWI76_RS09670 +1.1 4.6 recombination factor protein RarA compare
BWI76_RS23760 +1.1 2.1 tRNA-Gly compare
BWI76_RS21110 +1.0 8.2 hypothetical protein compare
BWI76_RS20315 +1.0 1.9 N-acetyltransferase compare
BWI76_RS04705 +1.0 4.3 DNA-binding transcriptional regulator FruR compare
BWI76_RS22130 +1.0 1.6 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS06535 +1.0 4.9 endopeptidase La compare
BWI76_RS11250 +1.0 1.3 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS21200 +1.0 1.4 aldose epimerase compare
BWI76_RS14620 +1.0 2.8 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase compare
BWI76_RS09530 +1.0 1.1 hypothetical protein compare
BWI76_RS15920 +1.0 1.6 hypothetical protein compare
BWI76_RS01195 +1.0 1.9 membrane protein compare
BWI76_RS06015 +0.9 1.6 hypothetical protein compare
BWI76_RS24180 +0.9 1.8 hypothetical protein compare
BWI76_RS12910 +0.9 4.4 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BWI76_RS12680 +0.9 3.3 oxidoreductase compare
BWI76_RS14835 +0.9 1.3 hypothetical protein compare
BWI76_RS21235 +0.9 1.1 hypothetical protein compare
BWI76_RS24065 +0.9 2.4 deoxyribonuclease I compare
BWI76_RS09100 +0.9 3.3 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS24240 +0.9 2.1 hypothetical protein compare
BWI76_RS19900 +0.9 3.5 FAD:protein FMN transferase compare
BWI76_RS06375 +0.9 1.8 oxidoreductase compare
BWI76_RS26805 +0.9 2.5 cellulose biosynthesis protein BcsF compare
BWI76_RS24335 +0.8 2.1 two-component system response regulator QseB compare
BWI76_RS10990 +0.8 1.0 dihydroorotase compare
BWI76_RS21105 +0.8 4.8 penicillin-binding protein 1C compare
BWI76_RS12600 +0.8 3.5 MFS transporter compare
BWI76_RS15260 +0.8 1.6 hypothetical protein compare
BWI76_RS09935 +0.8 3.5 paraquat-inducible membrane protein A compare
BWI76_RS25285 +0.8 0.9 HPr family phosphocarrier protein compare
BWI76_RS20915 +0.8 4.0 peroxiredoxin compare
BWI76_RS23500 +0.8 7.2 hypothetical protein compare
BWI76_RS23495 +0.8 5.3 hypothetical protein compare
BWI76_RS14040 +0.8 3.3 thiaminase compare
BWI76_RS14970 +0.8 1.6 pyrroline-5-carboxylate reductase compare
BWI76_RS07470 +0.8 2.5 MBL fold metallo-hydrolase compare
BWI76_RS03815 +0.8 2.2 hypothetical protein compare
BWI76_RS00060 +0.8 2.1 N-acetylneuraminate lyase compare
BWI76_RS24810 +0.8 1.6 hypothetical protein compare
BWI76_RS16655 +0.8 1.6 CatA-like O-acetyltransferase compare
BWI76_RS05465 +0.8 0.8 amidohydrolase compare
BWI76_RS16395 +0.8 2.4 glutathione S-transferase compare
BWI76_RS15280 +0.8 3.2 sugar transporter compare
BWI76_RS14610 +0.8 2.3 putative hydrolase compare
BWI76_RS26470 +0.8 3.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS04095 +0.8 1.2 dUMP phosphatase compare
BWI76_RS16510 +0.8 2.4 transcriptional repressor PurR compare
BWI76_RS05235 +0.8 1.0 hypothetical protein compare
BWI76_RS18550 +0.8 1.5 tRNA-Asn compare
BWI76_RS22085 +0.8 1.2 L-valine transporter subunit YgaH compare
BWI76_RS13260 +0.8 3.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
BWI76_RS02580 +0.8 1.2 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS23505 +0.8 6.2 ferrous iron transporter B compare
BWI76_RS14410 +0.8 1.8 hypothetical protein compare
BWI76_RS24465 +0.7 2.6 adenylate cyclase compare
BWI76_RS15775 +0.7 2.1 replication protein compare
BWI76_RS05885 +0.7 1.3 anion permease compare
BWI76_RS11060 +0.7 1.8 septum formation inhibitor Maf compare
BWI76_RS08510 +0.7 2.7 cyd operon protein YbgE compare
BWI76_RS06340 +0.7 0.8 hypothetical protein compare
BWI76_RS25280 +0.7 1.5 RNase adaptor protein RapZ compare
BWI76_RS02265 +0.7 2.4 putative transmembrane protein compare
BWI76_RS12715 +0.7 2.0 universal stress protein F compare
BWI76_RS26855 +0.7 2.3 cellulose synthase operon protein YhjQ compare
BWI76_RS00640 +0.7 1.3 L-rhamnose mutarotase compare
BWI76_RS15735 +0.7 0.9 hypothetical protein compare
BWI76_RS05810 +0.7 1.1 hypothetical protein compare
BWI76_RS25855 +0.7 1.5 bacterioferritin compare
BWI76_RS19885 +0.7 2.6 multidrug ABC transporter permease/ATP-binding protein conserved
BWI76_RS04840 +0.7 2.4 prepilin peptidase-dependent pilin compare
BWI76_RS23140 +0.7 1.4 carboxysome shell protein compare
BWI76_RS21490 +0.7 4.5 GGDEF domain-containing protein compare
BWI76_RS09560 +0.7 1.2 DoxX family membrane protein compare
BWI76_RS22685 +0.7 3.5 hypothetical protein compare
BWI76_RS23490 +0.7 4.8 fimbrial protein compare
BWI76_RS17075 +0.7 2.8 3-deoxy-7-phosphoheptulonate synthase compare
BWI76_RS12695 +0.7 1.7 zinc transporter ZntB compare
BWI76_RS09255 +0.7 1.9 hypothetical protein compare
BWI76_RS00295 +0.7 3.4 transcriptional regulator RbsR compare
BWI76_RS17045 +0.7 1.1 hypothetical protein compare
BWI76_RS01545 +0.7 3.0 thiamine biosynthesis protein ThiS compare
BWI76_RS06635 +0.7 0.6 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS26875 +0.7 1.5 dipeptide ABC transporter permease DppC compare
BWI76_RS04580 +0.7 2.0 L-ribulose-5-phosphate 4-epimerase compare
BWI76_RS10890 +0.7 2.2 glyoxylate/hydroxypyruvate reductase A compare
BWI76_RS11835 +0.7 1.4 putative regulatory protein MarR compare
BWI76_RS01095 +0.7 1.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS19495 +0.7 0.9 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS24575 +0.7 1.1 hypothetical protein compare
BWI76_RS19795 +0.7 4.1 microcin C ABC transporter ATP-binding protein YejF compare
BWI76_RS09730 +0.7 1.0 pyruvate formate lyase 1-activating protein compare
BWI76_RS17080 +0.7 3.3 hypothetical protein compare
BWI76_RS17935 +0.7 2.3 DUF2627 domain-containing protein compare
BWI76_RS21390 +0.7 1.1 thiol disulfide reductase thioredoxin compare
BWI76_RS09195 +0.7 1.2 N-acetyltransferase compare
BWI76_RS03040 +0.7 2.4 leucyl aminopeptidase compare
BWI76_RS19025 +0.6 4.6 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS10935 +0.6 3.5 glucan biosynthesis glucosyltransferase H compare
BWI76_RS12235 +0.6 0.7 hypothetical protein compare
BWI76_RS16370 +0.6 1.8 electron transport complex subunit D compare
BWI76_RS16095 +0.6 2.9 thiamine biosynthesis protein ApbE compare
BWI76_RS05870 +0.6 2.5 ABC transporter compare
BWI76_RS16795 +0.6 1.9 amino acid ABC transporter ATPase compare
BWI76_RS18455 +0.6 1.2 tRNA-Ser compare
BWI76_RS05005 +0.6 1.7 polynucleotide adenylyltransferase compare
BWI76_RS11180 +0.6 2.0 hypothetical protein compare
BWI76_RS04155 +0.6 2.3 membrane protein compare
BWI76_RS16910 +0.6 1.6 2-keto-4-pentenoate hydratase compare
BWI76_RS10755 +0.6 1.0 pyrimidine utilization flavin reductase protein F compare
BWI76_RS24390 +0.6 1.0 hypothetical protein compare
BWI76_RS12185 +0.6 1.3 hypothetical protein compare
BWI76_RS20025 +0.6 1.8 HAMP domain-containing histidine kinase compare
BWI76_RS11710 +0.6 2.0 nucleotide excision repair endonuclease compare
BWI76_RS03525 +0.6 2.3 tryptophanyl-tRNA synthetase compare
BWI76_RS16400 +0.6 2.0 pyridoxal kinase compare
BWI76_RS06330 +0.6 2.8 DNA-binding transcriptional regulator compare
BWI76_RS09080 +0.6 1.0 molybdopterin-synthase adenylyltransferase MoeB compare
BWI76_RS24540 +0.6 2.1 hypothetical protein compare
BWI76_RS13975 +0.6 1.5 urea carboxylase compare
BWI76_RS26305 +0.6 3.0 sn-glycerol-3-phosphate ABC transporter substrate-binding protein compare
BWI76_RS13545 +0.6 0.9 N-acetyltransferase compare
BWI76_RS14015 +0.6 2.5 L-2,4-diaminobutyrate decarboxylase compare
BWI76_RS07380 +0.6 1.6 hypothetical protein compare
BWI76_RS06975 +0.6 1.9 DNA-binding transcriptional activator AllS compare
BWI76_RS24460 +0.6 3.2 bifunctional glutamine synthetase adenylyltransferase/deadenyltransferase compare
BWI76_RS18355 +0.6 2.8 amino acid ABC transporter permease compare
BWI76_RS09825 +0.6 3.3 envelope biogenesis factor ElyC compare
BWI76_RS11155 +0.6 1.8 penicillin-binding protein activator LpoB compare
BWI76_RS15715 +0.6 1.9 putative ninG protein compare
BWI76_RS15930 +0.6 2.0 dimethylsulfoxide reductase, chain B compare
BWI76_RS23555 +0.6 2.3 type 1 major fimbrial subunit precursor compare
BWI76_RS08725 +0.6 2.4 Formiminoglutamase (EC 3.5.3.8) (from data) compare
BWI76_RS20385 +0.6 2.2 aspartate-semialdehyde dehydrogenase compare
BWI76_RS20270 +0.6 1.6 hypothetical protein compare
BWI76_RS21940 +0.6 1.5 SDR family oxidoreductase compare
BWI76_RS20985 +0.6 2.6 glycosyl hydrolase family protein compare
BWI76_RS20395 +0.6 2.0 flagella biosynthesis regulator compare
BWI76_RS26810 +0.6 2.7 cellulose biosynthesis protein BcsG compare
BWI76_RS20910 +0.6 3.3 glycine cleavage system transcriptional repressor compare
BWI76_RS00940 +0.6 3.0 transcriptional regulator HdfR compare
BWI76_RS00415 +0.6 2.2 glucose-1-phosphatase compare
BWI76_RS20040 +0.6 1.6 tricarboxylic transport membrane protein compare
BWI76_RS14930 +0.6 1.7 hypothetical protein compare
BWI76_RS20230 +0.6 1.1 hypothetical protein compare
BWI76_RS05880 +0.6 0.5 AraC-type DNA-binding domain-containing protein compare
BWI76_RS23470 +0.6 5.0 hypothetical protein compare
BWI76_RS17180 +0.6 1.6 hypothetical protein compare
BWI76_RS14540 +0.6 1.5 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS16090 +0.6 1.8 two-component system response regulator DcuR compare
BWI76_RS12485 +0.6 2.4 TyrR family transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms