Experiment set10IT049 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS01210 -4.9 -3.8 tyrosine recombinase XerC compare
BWI76_RS09660 -4.8 -3.3 DNA translocase FtsK compare
BWI76_RS23240 -4.7 -3.2 exonuclease V subunit gamma compare
BWI76_RS27305 -4.2 -9.6 glycosyl transferase compare
BWI76_RS24400 -4.0 -7.2 outer membrane channel protein TolC compare
BWI76_RS09760 -3.9 -6.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS15825 -3.8 -2.8 hypothetical protein compare
BWI76_RS23360 -3.7 -4.7 diaminopimelate decarboxylase compare
BWI76_RS09755 -3.7 -10.7 phosphoserine transaminase compare
BWI76_RS23480 -3.7 -11.4 EAL domain-containing protein compare
BWI76_RS26570 -3.5 -3.4 anion permease compare
BWI76_RS23230 -3.2 -4.8 exodeoxyribonuclease V subunit beta compare
BWI76_RS05840 -3.1 -6.2 glutamate 5-kinase compare
BWI76_RS01325 -3.0 -3.6 twin-arginine translocase subunit TatB compare
BWI76_RS18950 -3.0 -5.0 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS26085 -3.0 -2.1 3-dehydroquinate synthase compare
BWI76_RS04160 -3.0 -8.6 phosphoserine phosphatase compare
BWI76_RS05200 -2.9 -2.8 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS18940 -2.9 -5.3 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS09970 -2.8 -7.2 porin OmpA compare
BWI76_RS00345 -2.7 -4.0 protein disulfide oxidoreductase DsbA compare
BWI76_RS07070 -2.6 -5.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04465 -2.6 -4.6 carbamoyl-phosphate synthase small subunit compare
BWI76_RS23920 -2.6 -5.5 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS21165 -2.5 -1.9 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS07065 -2.4 -8.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS06765 -2.4 -2.4 transcriptional regulator compare
BWI76_RS06770 -2.4 -9.5 Hha toxicity attenuator compare
BWI76_RS20355 -2.3 -5.0 colicin V production protein compare
BWI76_RS18935 -2.3 -6.5 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS26395 -2.3 -5.6 cell division protein FtsE compare
BWI76_RS18955 -2.2 -4.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS01615 -2.2 -8.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS18165 -2.2 -1.8 NUDIX pyrophosphatase compare
BWI76_RS21475 -2.2 -5.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS27430 -2.2 -1.5 (p)ppGpp synthetase compare
BWI76_RS27290 -2.1 -6.8 hypothetical protein compare
BWI76_RS25225 -2.1 -7.3 ABC transporter permease compare
BWI76_RS15835 -2.1 -1.6 hypothetical protein compare
BWI76_RS17720 -2.1 -1.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS01330 -2.1 -3.5 twin-arginine translocase subunit TatC compare
BWI76_RS00855 -2.0 -7.2 argininosuccinate lyase compare
BWI76_RS15660 -2.0 -1.7 hypothetical protein compare
BWI76_RS08525 -2.0 -2.3 colicin transporter compare
BWI76_RS02725 -2.0 -1.4 HxlR family transcriptional regulator compare
BWI76_RS23365 -2.0 -4.3 LysR family transcriptional regulator compare
BWI76_RS04645 -1.9 -5.1 3-dehydroquinase compare
BWI76_RS04250 -1.9 -5.3 homoserine kinase compare
BWI76_RS18930 -1.9 -3.9 histidinol-phosphate transaminase compare
BWI76_RS13560 -1.9 -1.4 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS20650 -1.9 -1.3 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS15115 -1.8 -6.0 MFS transporter compare
BWI76_RS04470 -1.8 -7.1 carbamoyl phosphate synthase large subunit compare
BWI76_RS04530 -1.8 -2.6 peptidylprolyl isomerase SurA compare
BWI76_RS18925 -1.7 -6.1 histidinol dehydrogenase compare
BWI76_RS20900 -1.7 -1.3 outer membrane protein assembly factor BamC compare
BWI76_RS08500 -1.7 -3.6 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS20965 -1.7 -3.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS25115 -1.7 -7.8 argininosuccinate synthase compare
BWI76_RS05835 -1.7 -2.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS00845 -1.7 -7.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00850 -1.7 -7.3 acetylglutamate kinase compare
BWI76_RS21450 -1.7 -2.3 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS23220 -1.7 -7.4 amino-acid N-acetyltransferase compare
BWI76_RS01885 -1.6 -1.5 CsbD family protein compare
BWI76_RS25230 -1.6 -5.8 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS01185 -1.6 -1.8 adenylate cyclase compare
BWI76_RS21070 -1.6 -2.1 outer membrane protein assembly factor BamB compare
BWI76_RS03010 -1.6 -7.7 ornithine carbamoyltransferase compare
BWI76_RS15680 -1.5 -2.5 hypothetical protein compare
BWI76_RS00875 -1.5 -3.4 DNA-binding transcriptional regulator FabR compare
BWI76_RS20350 -1.5 -4.4 amidophosphoribosyltransferase compare
BWI76_RS26670 -1.5 -5.7 two-component sensor histidine kinase compare
BWI76_RS23265 -1.5 -1.6 hypothetical protein compare
BWI76_RS20475 -1.5 -4.4 phospholipid-binding lipoprotein MlaA compare
BWI76_RS06240 -1.5 -3.6 branched-chain amino acid transport system 2 carrier protein BrnQ compare
BWI76_RS17770 -1.5 -1.9 isomerase/hydrolase compare
BWI76_RS21265 -1.5 -9.6 phosphoribosylformylglycinamidine synthase compare
BWI76_RS26775 -1.5 -4.2 endo-1,4-D-glucanase compare
BWI76_RS00835 -1.5 -7.0 phosphoenolpyruvate carboxylase compare
BWI76_RS20895 -1.4 -3.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS15110 -1.4 -10.0 putative excinuclease ABC subunit A compare
BWI76_RS00400 -1.4 -1.1 glutamine synthetase compare
BWI76_RS21310 -1.4 -1.2 DNA repair protein RecO compare
BWI76_RS16485 -1.4 -1.9 ribonuclease T compare
BWI76_RS09635 -1.4 -2.6 amino acid ABC transporter ATP-binding protein compare
BWI76_RS01795 -1.4 -2.8 hypothetical protein compare
BWI76_RS19805 -1.4 -2.4 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS01610 -1.4 -4.3 phosphoribosylamine--glycine ligase compare
BWI76_RS18780 -1.4 -2.6 D-alanyl-D-alanine carboxypeptidase compare
BWI76_RS04510 -1.4 -1.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS05075 -1.4 -1.1 type II secretion system protein GspG compare
BWI76_RS23485 -1.4 -5.1 hypothetical protein compare
BWI76_RS08495 -1.4 -4.4 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS24080 -1.4 -1.1 DUF179 domain-containing protein compare
BWI76_RS08605 -1.4 -1.8 phosphoglyceromutase compare
BWI76_RS04255 -1.4 -5.9 threonine synthase compare
BWI76_RS26390 -1.4 -4.1 cell division protein FtsX compare
BWI76_RS01790 -1.3 -7.4 lysine-sensitive aspartokinase 3 compare
BWI76_RS19405 -1.3 -3.9 LysR family transcriptional regulator compare
BWI76_RS04715 -1.3 -1.7 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS18140 -1.3 -3.0 zinc ABC transporter permease compare
BWI76_RS15830 -1.3 -2.6 hypothetical protein compare
BWI76_RS04305 -1.3 -0.9 molecular chaperone DnaJ compare
BWI76_RS04670 -1.3 -5.6 3-isopropylmalate dehydratase large subunit compare
BWI76_RS15810 -1.3 -4.0 hypothetical protein compare
BWI76_RS19845 -1.3 -3.1 phosphatase compare
BWI76_RS25215 -1.3 -3.4 phospholipid-binding protein MlaC compare
BWI76_RS20720 -1.2 -1.6 hypothetical protein compare
BWI76_RS20435 -1.2 -0.7 chorismate synthase compare
BWI76_RS18715 -1.2 -5.5 hypothetical protein compare
BWI76_RS01350 -1.2 -0.9 NAD(P)H-flavin reductase compare
BWI76_RS11980 -1.2 -1.8 DeoR family transcriptional regulator compare
BWI76_RS06490 -1.2 -3.8 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS20490 -1.2 -2.9 hypothetical protein compare
BWI76_RS06830 -1.2 -3.9 recombination protein RecR compare
BWI76_RS06775 -1.2 -6.3 multidrug efflux RND transporter permease subunit compare
BWI76_RS10815 -1.2 -3.3 iron permease compare
BWI76_RS15635 -1.2 -3.7 hypothetical protein compare
BWI76_RS21000 -1.2 -4.2 exopolyphosphatase compare
BWI76_RS21580 -1.2 -1.7 SsrA-binding protein compare
BWI76_RS25960 -1.2 -2.7 NUDIX hydrolase compare
BWI76_RS27310 -1.2 -5.5 glycosyltransferase compare
BWI76_RS19010 -1.2 -2.6 polysaccharide pyruvyl transferase yvff compare
BWI76_RS25600 -1.2 -0.8 tRNA-Thr compare
BWI76_RS09655 -1.2 -3.5 leucine-responsive regulatory protein compare
BWI76_RS05135 -1.2 -1.9 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS00965 -1.2 -0.9 acetolactate synthase 2 small subunit compare
BWI76_RS19035 -1.2 -3.7 dTDP-rhamnosyl transferase compare
BWI76_RS06740 -1.2 -2.9 50S ribosomal protein L36 compare
BWI76_RS09870 -1.2 -4.4 aromatic amino acid aminotransferase compare
BWI76_RS00975 -1.2 -5.0 dihydroxy-acid dehydratase compare
BWI76_RS12090 -1.2 -1.9 HNH endonuclease compare
BWI76_RS23475 -1.1 -6.6 helix-turn-helix transcriptional regulator compare
BWI76_RS04570 -1.1 -4.1 RNA polymerase-associated protein RapA compare
BWI76_RS02410 -1.1 -1.9 EF-P beta-lysylation protein EpmB compare
BWI76_RS02995 -1.1 -5.3 aspartate carbamoyltransferase compare
BWI76_RS00010 -1.1 -5.2 DNA replication and repair protein RecF compare
BWI76_RS16995 -1.1 -5.6 Fe-S cluster assembly protein SufB compare
BWI76_RS25160 -1.1 -1.5 transcription elongation factor GreA compare
BWI76_RS05175 -1.1 -9.2 dGTPase compare
BWI76_RS07865 -1.1 -1.5 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS05260 -1.1 -1.2 chaperone compare
BWI76_RS11965 -1.1 -2.7 orotidine-5'-phosphate decarboxylase compare
BWI76_RS12550 -1.1 -1.3 hypothetical protein compare
BWI76_RS26000 -1.1 -3.8 aspartate aminotransferase family protein compare
BWI76_RS09640 -1.1 -3.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS26665 -1.1 -2.2 DNA-binding response regulator compare
BWI76_RS16975 -1.1 -3.6 cysteine desufuration protein SufE compare
BWI76_RS01090 -1.1 -3.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS04245 -1.0 -6.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS18135 -1.0 -3.1 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS24600 -1.0 -2.9 dihydroxyacetone kinase compare
BWI76_RS19215 -1.0 -1.5 proline-specific peptidase compare
BWI76_RS08535 -1.0 -1.9 translocation protein TolB compare
BWI76_RS01220 -1.0 -4.1 DNA-dependent helicase II compare
BWI76_RS14770 -1.0 -1.2 PTS IIA 2 domain protein compare
BWI76_RS17400 -1.0 -1.1 transporter compare
BWI76_RS06525 -1.0 -3.2 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS09860 -1.0 -2.4 hypothetical protein compare
BWI76_RS06185 -1.0 -5.3 shikimate kinase II compare
BWI76_RS11610 -1.0 -2.3 glutamate dehydrogenase compare
BWI76_RS19910 -1.0 -5.1 phosphotransferase RcsD compare
BWI76_RS15675 -1.0 -3.7 hypothetical protein compare
BWI76_RS25505 -1.0 -3.7 RNase E specificity factor CsrD compare
BWI76_RS16980 -1.0 -1.6 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS17780 -1.0 -3.1 septum formation inhibitor compare
BWI76_RS27620 -1.0 -2.7 hypothetical protein compare
BWI76_RS04665 -1.0 -7.2 3-isopropylmalate dehydratase small subunit compare
BWI76_RS01110 -1.0 -3.1 TDP-fucosamine acetyltransferase compare
BWI76_RS08120 -1.0 -3.6 cobalt transporter compare
BWI76_RS25645 -1.0 -2.8 shikimate dehydrogenase compare
BWI76_RS18710 -1.0 -6.4 GGDEF-domain containing protein compare
BWI76_RS27365 -1.0 -3.2 hypothetical protein compare
BWI76_RS05350 -1.0 -6.0 Rcs stress response system protein RcsF compare
BWI76_RS16445 -1.0 -2.6 auxiliary transporter membrane fusion protein compare
BWI76_RS10035 -1.0 -1.0 hypothetical protein compare
BWI76_RS12470 -0.9 -1.2 thiosulfate sulfurtransferase PspE compare
BWI76_RS00305 -0.9 -4.4 GntR family transcriptional regulator compare
BWI76_RS21395 -0.9 -1.6 DTW domain-containing protein compare
BWI76_RS00375 -0.9 -1.6 hypothetical protein compare
BWI76_RS24580 -0.9 -4.9 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS02700 -0.9 -4.0 D-serine/D-alanine/glycine transporter compare
BWI76_RS25870 -0.9 -1.1 elongation factor Tu compare
BWI76_RS23930 -0.9 -3.5 transcriptional regulator ArgP compare
BWI76_RS14915 -0.9 -2.9 hypothetical protein compare
BWI76_RS08375 -0.9 -1.8 pyroglutamyl-peptidase I compare
BWI76_RS06780 -0.9 -3.9 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS21505 -0.9 -0.9 hypothetical protein compare
BWI76_RS09420 -0.9 -1.6 hypothetical protein compare
BWI76_RS12280 -0.9 -2.6 hypothetical protein compare
BWI76_RS14410 -0.9 -2.2 hypothetical protein compare
BWI76_RS27235 -0.9 -3.6 murein hydrolase activator EnvC compare
BWI76_RS24745 -0.9 -2.6 membrane protein compare
BWI76_RS14325 -0.9 -3.2 maturase compare
BWI76_RS04675 -0.9 -3.3 3-isopropylmalate dehydrogenase compare
BWI76_RS18360 -0.9 -1.2 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS05965 -0.9 -1.3 hypothetical protein compare
BWI76_RS14460 -0.9 -2.6 MurR/RpiR family transcriptional regulator compare
BWI76_RS02530 -0.9 -1.4 tRNA dimethylallyltransferase compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms