Experiment set10IT049 for Cupriavidus basilensis FW507-4G11

Compare to:

Hexanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -7.4 -4.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS12175 -6.5 -4.5 malate synthase compare
RR42_RS07425 -6.3 -4.4 IclR family transcriptional regulator compare
RR42_RS01385 -6.3 -3.9 5,10-methylenetetrahydrofolate reductase compare
RR42_RS06485 -5.7 -5.5 chorismate synthase compare
RR42_RS16275 -5.4 -3.7 membrane protein compare
RR42_RS30655 -5.4 -5.3 LysR family transcriptional regulator compare
RR42_RS14385 -5.4 -3.7 3-isopropylmalate dehydrogenase compare
RR42_RS16255 -5.1 -7.0 sulfate adenylyltransferase compare
RR42_RS00420 -4.9 -6.0 hypothetical protein compare
RR42_RS14400 -4.8 -3.3 isopropylmalate isomerase compare
RR42_RS14365 -4.7 -3.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS16250 -4.7 -7.1 sulfate adenylyltransferase compare
RR42_RS05860 -4.7 -3.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS16280 -4.5 -9.0 transcriptional regulator compare
RR42_RS05990 -4.1 -9.5 aromatic amino acid aminotransferase compare
RR42_RS04475 -4.1 -10.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS14390 -4.1 -3.6 3-isopropylmalate dehydratase compare
RR42_RS01160 -4.0 -10.1 homoserine O-acetyltransferase compare
RR42_RS05955 -4.0 -1.5 hypothetical protein compare
RR42_RS19005 -3.9 -4.5 3-dehydroquinate synthase compare
RR42_RS19010 -3.9 -5.3 shikimate kinase compare
RR42_RS26935 -3.9 -3.7 farnesyl-diphosphate farnesyltransferase compare
RR42_RS18305 -3.8 -3.6 anthranilate phosphoribosyltransferase compare
RR42_RS16270 -3.7 -8.7 sulfite reductase compare
RR42_RS30660 -3.7 -7.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS04580 -3.7 -14.5 Butyryl-CoA dehydrogenase (EC 1.3.8.1) (from data) conserved
RR42_RS17645 -3.7 -5.6 shikimate dehydrogenase compare
RR42_RS01845 -3.7 -1.9 glycerol-3-phosphate dehydrogenase compare
RR42_RS19635 -3.6 -2.4 hypothetical protein compare
RR42_RS07555 -3.5 -2.3 potassium transporter Kup compare
RR42_RS00940 -3.4 -8.1 biotin synthase compare
RR42_RS18295 -3.4 -10.4 anthranilate synthase component I compare
RR42_RS26455 -3.4 -1.8 amino acid ABC transporter ATP-binding protein compare
RR42_RS14055 -3.4 -3.2 elongation factor 4 compare
RR42_RS01290 -3.3 -8.0 thiamine biosynthesis protein ThiC compare
RR42_RS02775 -3.3 -2.9 molecular chaperone SurA compare
RR42_RS14360 -3.3 -1.7 tryptophan synthase subunit alpha compare
RR42_RS24605 -3.3 -11.3 TetR family transcriptional regulator compare
RR42_RS16245 -3.2 -5.3 uroporphyrin-III methyltransferase compare
RR42_RS14320 -3.2 -4.5 O-succinylhomoserine sulfhydrylase compare
RR42_RS01920 -2.9 -4.3 protoheme IX farnesyltransferase compare
RR42_RS19885 -2.9 -1.9 aminoglycoside transporter compare
RR42_RS00715 -2.8 -1.9 ferritin compare
RR42_RS04535 -2.7 -2.6 cysteine synthase compare
RR42_RS04470 -2.7 -5.8 prephenate dehydrogenase compare
RR42_RS18990 -2.6 -15.2 glutamate synthase compare
RR42_RS16240 -2.6 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS01985 -2.6 -11.7 zinc protease compare
RR42_RS01980 -2.6 -13.4 peptidase M16 compare
RR42_RS12925 -2.6 -2.3 ATPase compare
RR42_RS18985 -2.5 -7.9 glutamate synthase compare
RR42_RS06630 -2.5 -2.2 integration host factor subunit alpha compare
RR42_RS17730 -2.5 -2.9 hypothetical protein compare
RR42_RS33255 -2.5 -2.8 protein-tyrosine phosphatase compare
RR42_RS02705 -2.5 -2.4 Holliday junction DNA helicase RuvA compare
RR42_RS18970 -2.5 -12.2 toluene ABC transporter ATP-binding protein compare
RR42_RS31495 -2.5 -2.8 Cro/Cl family transcriptional regulator compare
RR42_RS18965 -2.3 -10.8 ABC transporter permease compare
RR42_RS31920 -2.3 -2.1 acetyl-CoA acetyltransferase compare
RR42_RS28885 -2.3 -5.8 membrane protein compare
RR42_RS03360 -2.3 -4.1 fructose ABC transporter, ATPase component (FrcA) (from data) compare
RR42_RS00925 -2.2 -7.3 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS15745 -2.2 -6.5 group1 glycosyl transferase compare
RR42_RS18300 -2.2 -2.8 anthranilate synthase subunit II compare
RR42_RS11770 -2.2 -1.9 cyclase compare
RR42_RS17720 -2.1 -1.9 sugar kinase compare
RR42_RS17180 -2.1 -7.9 hypothetical protein compare
RR42_RS04700 -2.1 -1.5 ribonuclease G compare
RR42_RS20195 -2.0 -0.7 ATPase F0F1 compare
RR42_RS03020 -2.0 -1.9 MarR family transcriptional regulator compare
RR42_RS08220 -2.0 -1.7 hypothetical protein compare
RR42_RS18960 -2.0 -9.4 ABC transporter substrate-binding protein compare
RR42_RS17355 -2.0 -0.7 hypothetical protein compare
RR42_RS01780 -2.0 -4.2 glutathione synthetase compare
RR42_RS20205 -2.0 -2.9 chromosome partitioning protein compare
RR42_RS33250 -1.9 -7.6 tyrosine protein kinase compare
RR42_RS18270 -1.9 -1.8 murein transglycosylase compare
RR42_RS18945 -1.8 -6.3 toluene tolerance protein compare
RR42_RS33260 -1.8 -7.7 multidrug MFS transporter compare
RR42_RS21595 -1.8 -4.3 IclR family transcriptional regulator compare
RR42_RS34815 -1.8 -4.3 diguanylate cyclase compare
RR42_RS17010 -1.8 -10.0 L-aspartate oxidase compare
RR42_RS11795 -1.8 -1.7 PEP synthetase regulatory protein compare
RR42_RS17375 -1.8 -1.3 hypothetical protein compare
RR42_RS02500 -1.7 -1.9 TetR family transcriptional regulator compare
RR42_RS01775 -1.7 -3.5 glutamate--cysteine ligase compare
RR42_RS19900 -1.7 -1.4 MerR family transcriptional regulator compare
RR42_RS32590 -1.7 -1.6 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS30640 -1.7 -3.6 DNA mismatch repair protein MutT compare
RR42_RS15895 -1.7 -6.6 uroporphyrinogen III methyltransferase compare
RR42_RS04460 -1.7 -3.3 chorismate mutase compare
RR42_RS00930 -1.7 -6.1 8-amino-7-oxononanoate synthase compare
RR42_RS25015 -1.7 -2.9 gluconolactonase compare
RR42_RS19090 -1.7 -1.4 cytochrome C compare
RR42_RS33210 -1.6 -4.5 teichoic acid biosynthesis protein compare
RR42_RS34935 -1.6 -1.9 cytochrome C oxidase subunit IV compare
RR42_RS18855 -1.6 -2.1 preprotein translocase compare
RR42_RS17105 -1.6 -6.5 Clp protease ClpX compare
RR42_RS01905 -1.6 -2.7 cytochrome C oxidase subunit II compare
RR42_RS07225 -1.6 -1.2 hypothetical protein compare
RR42_RS07360 -1.5 -2.0 ATPase compare
RR42_RS34650 -1.5 -3.7 LacI family transcriptional regulator compare
RR42_RS03875 -1.5 -2.5 nucleoside 2-deoxyribosyltransferase compare
RR42_RS37045 -1.5 -1.4 thiamine biosynthesis protein ApbE compare
RR42_RS12550 -1.4 -3.5 hypothetical protein compare
RR42_RS05500 -1.4 -1.4 preprotein translocase subunit SecG compare
RR42_RS17020 -1.4 -3.5 quinolinate synthetase compare
RR42_RS33240 -1.4 -9.6 GDP-L-fucose synthase compare
RR42_RS06255 -1.4 -1.4 lipoprotein compare
RR42_RS15035 -1.4 -3.2 ZIP zinc transporter compare
RR42_RS10370 -1.4 -4.3 ABC transporter compare
RR42_RS04255 -1.4 -1.9 chemotaxis protein CheW compare
RR42_RS14075 -1.4 -4.8 anti-sigma factor compare
RR42_RS03080 -1.4 -1.7 recombinase RecA compare
RR42_RS35875 -1.3 -6.0 UDP-galactose-4-epimerase compare
RR42_RS06240 -1.3 -1.2 tryptophan--tRNA ligase compare
RR42_RS16260 -1.3 -0.8 phosphoadenosine phosphosulfate reductase compare
RR42_RS18850 -1.3 -1.4 preprotein translocase subunit TatC compare
RR42_RS29315 -1.3 -7.0 AcrR family transcriptional regulator compare
RR42_RS17050 -1.3 -3.7 phosphoribosylglycinamide formyltransferase compare
RR42_RS07380 -1.3 -3.3 dihydrolipoamide dehydrogenase compare
RR42_RS21690 -1.3 -0.9 acetyltransferase compare
RR42_RS23515 -1.3 -3.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS15280 -1.3 -7.7 long-chain fatty acid--CoA ligase compare
RR42_RS14220 -1.3 -1.8 ferredoxin-NADP reductase compare
RR42_RS19485 -1.3 -1.0 general secretion pathway protein GspH compare
RR42_RS22185 -1.2 -2.2 LysR family transcriptional regulator compare
RR42_RS31775 -1.2 -1.5 HxlR family transcriptional regulator compare
RR42_RS01260 -1.2 -4.7 lauroyl acyltransferase compare
RR42_RS33215 -1.2 -5.3 transferase compare
RR42_RS31505 -1.2 -1.7 hypothetical protein compare
RR42_RS03385 -1.2 -5.2 sugar kinase compare
RR42_RS33235 -1.2 -4.7 GDP-mannose 4,6-dehydratase compare
RR42_RS15785 -1.2 -4.8 glycosyl transferase family 28 compare
RR42_RS02470 -1.2 -1.5 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS09180 -1.2 -0.9 Rrf2 family transcriptional regulator compare
RR42_RS21220 -1.2 -1.0 iron transporter FeoB compare
RR42_RS21505 -1.2 -1.1 hypothetical protein compare
RR42_RS20350 -1.2 -2.5 hypothetical protein compare
RR42_RS08240 -1.1 -2.0 DNA-binding protein compare
RR42_RS15890 -1.1 -4.7 heme biosynthesis protein HemY compare
RR42_RS01435 -1.1 -1.8 short-chain dehydrogenase compare
RR42_RS18995 -1.1 -4.7 transposase compare
RR42_RS05485 -1.1 -1.2 polynucleotide phosphorylase/polyadenylase compare
RR42_RS15470 -1.1 -1.2 biopolymer transporter ExbD compare
RR42_RS33245 -1.1 -4.4 mannose-1-phosphate guanyltransferase compare
RR42_RS33195 -1.1 -5.8 UDP-sugar lipid carrier transferase compare
RR42_RS01895 -1.1 -2.7 MFS transporter compare
RR42_RS28000 -1.1 -1.8 hypothetical protein compare
RR42_RS32600 -1.1 -2.6 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS18825 -1.1 -1.1 ubiquinol-cytochrome C reductase compare
RR42_RS22360 -1.1 -1.4 hypothetical protein compare
RR42_RS08260 -1.1 -1.6 hypothetical protein compare
RR42_RS26580 -1.1 -1.0 hypothetical protein compare
RR42_RS34940 -1.0 -2.0 bb3-type cytochrome oxidase subunit IV compare
RR42_RS02785 -1.0 -2.9 dimethyladenosine transferase compare
RR42_RS17560 -1.0 -3.6 Fur family transcriptional regulator compare
RR42_RS33620 -1.0 -2.4 ABC transporter permease compare
RR42_RS14235 -1.0 -1.1 hypothetical protein compare
RR42_RS18020 -1.0 -2.4 ornithine acetyltransferase compare
RR42_RS07365 -1.0 -2.0 pyruvate dehydrogenase compare
RR42_RS05920 -1.0 -2.5 HrcA family transcriptional regulator compare
RR42_RS06875 -1.0 -1.5 hypothetical protein compare
RR42_RS10380 -1.0 -3.8 ABC transporter permease compare
RR42_RS13800 -1.0 -4.3 formyltetrahydrofolate deformylase compare
RR42_RS12180 -1.0 -1.8 haloacid dehalogenase compare
RR42_RS08175 -1.0 -1.0 hypothetical protein compare
RR42_RS15465 -1.0 -1.6 TonB-dependent receptor compare
RR42_RS03415 -1.0 -2.7 N-acetylmuramoyl-L-alanine amidase compare
RR42_RS02310 -1.0 -2.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS23205 -1.0 -0.8 hypothetical protein compare
RR42_RS27700 -1.0 -1.0 hypothetical protein compare
RR42_RS37330 -1.0 -3.2 1,4-D-glucanase compare
RR42_RS04135 -1.0 -0.9 pilus assembly protein CpaB compare
RR42_RS10140 -1.0 -4.4 8-amino-7-oxononanoate synthase compare
RR42_RS00790 -0.9 -5.4 chemotaxis protein CheY compare
RR42_RS02530 -0.9 -2.5 acyl-CoA hydrolase compare
RR42_RS18140 -0.9 -1.0 MarR family transcriptional regulator compare
RR42_RS03315 -0.9 -3.6 RND transporter MFP subunit compare
RR42_RS13040 -0.9 -5.0 iron transporter compare
RR42_RS01255 -0.9 -3.0 lauroyl acyltransferase compare
RR42_RS18520 -0.9 -2.4 hypothetical protein compare
RR42_RS29490 -0.9 -1.7 toxin HipA compare
RR42_RS32595 -0.9 -3.2 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS34905 -0.9 -2.6 enoyl-CoA hydratase compare
RR42_RS19065 -0.9 -3.7 transcriptional regulator compare
RR42_RS06805 -0.9 -2.1 hypothetical protein compare
RR42_RS22735 -0.9 -2.6 transcriptional regulator compare
RR42_RS17620 -0.9 -3.1 phosphatidylglycerophosphatase compare
RR42_RS07940 -0.9 -1.6 ABC transporter permease compare
RR42_RS09085 -0.9 -1.1 C4-dicarboxylate ABC transporter permease compare
RR42_RS34605 -0.9 -2.6 hypothetical protein compare
RR42_RS17590 -0.9 -1.3 16S rRNA methyltransferase compare
RR42_RS02440 -0.9 -0.8 membrane protein compare
RR42_RS19695 -0.9 -1.2 cytochrome C protein compare
RR42_RS23595 -0.9 -1.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS01505 -0.9 -1.0 tRNA-Cys compare
RR42_RS10855 -0.9 -0.7 diguanylate phosphodiesterase compare
RR42_RS26450 -0.9 -2.3 histidinol dehydrogenase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Hexanoic acid in Cupriavidus basilensis FW507-4G11

For carbon source Hexanoic acid across organisms