Experiment set10IT048 for Cupriavidus basilensis FW507-4G11

Compare to:

Valeric acid carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -7.3 -5.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS11270 -5.3 -12.2 aconitate hydratase compare
RR42_RS05990 -5.3 -7.2 aromatic amino acid aminotransferase compare
RR42_RS16275 -5.3 -3.6 membrane protein compare
RR42_RS19005 -5.2 -5.0 3-dehydroquinate synthase compare
RR42_RS14390 -5.1 -3.5 3-isopropylmalate dehydratase compare
RR42_RS18305 -4.8 -3.3 anthranilate phosphoribosyltransferase compare
RR42_RS01160 -4.7 -9.6 homoserine O-acetyltransferase compare
RR42_RS04475 -4.6 -11.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS30655 -4.6 -5.5 LysR family transcriptional regulator compare
RR42_RS14365 -4.6 -3.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS11275 -4.6 -6.9 3-methylitaconate isomerase compare
RR42_RS12925 -4.3 -2.9 ATPase compare
RR42_RS06485 -4.3 -8.1 chorismate synthase compare
RR42_RS16255 -4.3 -7.6 sulfate adenylyltransferase compare
RR42_RS11255 -4.2 -10.2 Fis family transcriptional regulator compare
RR42_RS16250 -4.2 -7.5 sulfate adenylyltransferase compare
RR42_RS11260 -4.1 -7.4 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
RR42_RS14400 -4.1 -4.9 isopropylmalate isomerase compare
RR42_RS01385 -4.0 -2.1 5,10-methylenetetrahydrofolate reductase compare
RR42_RS11790 -3.9 -10.7 phosphoenolpyruvate synthase compare
RR42_RS16270 -3.7 -7.9 sulfite reductase compare
RR42_RS05860 -3.6 -3.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS16245 -3.6 -4.2 uroporphyrin-III methyltransferase compare
RR42_RS01845 -3.6 -2.1 glycerol-3-phosphate dehydrogenase compare
RR42_RS18295 -3.5 -8.9 anthranilate synthase component I compare
RR42_RS27915 -3.5 -3.1 acyl-CoA synthetase compare
RR42_RS30660 -3.2 -6.4 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS14360 -3.2 -1.9 tryptophan synthase subunit alpha compare
RR42_RS16280 -3.1 -5.8 transcriptional regulator compare
RR42_RS14385 -3.0 -6.0 3-isopropylmalate dehydrogenase compare
RR42_RS14320 -2.9 -4.6 O-succinylhomoserine sulfhydrylase compare
RR42_RS34815 -2.9 -4.6 diguanylate cyclase compare
RR42_RS02085 -2.9 -7.5 RNA polymerase subunit sigma-54 compare
RR42_RS06255 -2.9 -1.9 lipoprotein compare
RR42_RS19010 -2.9 -5.8 shikimate kinase compare
RR42_RS00940 -2.7 -10.4 biotin synthase compare
RR42_RS17645 -2.7 -5.4 shikimate dehydrogenase compare
RR42_RS18300 -2.7 -3.1 anthranilate synthase subunit II compare
RR42_RS04460 -2.7 -5.6 chorismate mutase compare
RR42_RS00715 -2.7 -1.8 ferritin compare
RR42_RS29610 -2.6 -2.0 cytochrome C2 compare
RR42_RS26900 -2.6 -1.7 enoyl-CoA hydratase compare
RR42_RS16240 -2.5 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS18990 -2.5 -15.6 glutamate synthase compare
RR42_RS26455 -2.4 -1.8 amino acid ABC transporter ATP-binding protein compare
RR42_RS04470 -2.4 -4.5 prephenate dehydrogenase compare
RR42_RS33260 -2.4 -6.9 multidrug MFS transporter compare
RR42_RS17560 -2.4 -9.8 Fur family transcriptional regulator compare
RR42_RS15035 -2.3 -4.2 ZIP zinc transporter compare
RR42_RS11770 -2.3 -2.6 cyclase compare
RR42_RS33250 -2.3 -8.6 tyrosine protein kinase compare
RR42_RS17720 -2.2 -2.5 sugar kinase compare
RR42_RS16220 -2.2 -1.6 DNA polymerase III subunit chi compare
RR42_RS15415 -2.2 -2.9 membrane protein compare
RR42_RS17180 -2.2 -4.5 hypothetical protein compare
RR42_RS18985 -2.1 -6.1 glutamate synthase compare
RR42_RS11795 -2.1 -3.4 PEP synthetase regulatory protein compare
RR42_RS20205 -2.0 -2.6 chromosome partitioning protein compare
RR42_RS00420 -2.0 -5.1 hypothetical protein compare
RR42_RS03360 -1.9 -3.1 fructose ABC transporter, ATPase component (FrcA) (from data) compare
RR42_RS15905 -1.9 -7.4 phosphoenolpyruvate carboxylase compare
RR42_RS17020 -1.9 -5.4 quinolinate synthetase compare
RR42_RS04535 -1.9 -2.5 cysteine synthase compare
RR42_RS07555 -1.9 -1.7 potassium transporter Kup compare
RR42_RS01380 -1.8 -2.0 membrane protein compare
RR42_RS19900 -1.8 -1.6 MerR family transcriptional regulator compare
RR42_RS18850 -1.8 -1.7 preprotein translocase subunit TatC compare
RR42_RS07380 -1.8 -3.5 dihydrolipoamide dehydrogenase compare
RR42_RS36450 -1.8 -1.1 acyl dehydratase compare
RR42_RS04765 -1.8 -2.6 3-oxoacyl-ACP reductase compare
RR42_RS23205 -1.8 -1.3 hypothetical protein compare
RR42_RS00925 -1.8 -8.0 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS07365 -1.7 -2.5 pyruvate dehydrogenase compare
RR42_RS13800 -1.7 -6.0 formyltetrahydrofolate deformylase compare
RR42_RS02775 -1.7 -2.1 molecular chaperone SurA compare
RR42_RS28885 -1.7 -5.1 membrane protein compare
RR42_RS00440 -1.7 -2.1 hypothetical protein compare
RR42_RS22585 -1.7 -1.7 MarR family transcriptional regulator compare
RR42_RS01920 -1.7 -3.2 protoheme IX farnesyltransferase compare
RR42_RS01290 -1.7 -5.2 thiamine biosynthesis protein ThiC compare
RR42_RS04145 -1.6 -1.2 peptidase A24 compare
RR42_RS26935 -1.6 -3.0 farnesyl-diphosphate farnesyltransferase compare
RR42_RS15895 -1.6 -7.8 uroporphyrinogen III methyltransferase compare
RR42_RS17010 -1.6 -9.6 L-aspartate oxidase compare
RR42_RS36400 -1.6 -1.5 hypothetical protein compare
RR42_RS09015 -1.6 -2.6 trigger factor compare
RR42_RS21220 -1.6 -1.0 iron transporter FeoB compare
RR42_RS15890 -1.6 -6.8 heme biosynthesis protein HemY compare
RR42_RS33240 -1.6 -9.6 GDP-L-fucose synthase compare
RR42_RS01820 -1.5 -4.2 peptidase S41 compare
RR42_RS03365 -1.5 -1.4 fructose ABC transporter, permease component (FrcC) (from data) compare
RR42_RS12240 -1.5 -1.5 hypothetical protein compare
RR42_RS15745 -1.5 -3.9 group1 glycosyl transferase compare
RR42_RS19090 -1.5 -1.4 cytochrome C compare
RR42_RS09630 -1.5 -2.6 hypothetical protein compare
RR42_RS25510 -1.5 -1.9 short-chain dehydrogenase compare
RR42_RS06630 -1.5 -2.1 integration host factor subunit alpha compare
RR42_RS07245 -1.4 -2.3 hypothetical protein compare
RR42_RS08220 -1.4 -1.7 hypothetical protein compare
RR42_RS05420 -1.4 -1.6 membrane protein compare
RR42_RS17050 -1.4 -3.5 phosphoribosylglycinamide formyltransferase compare
RR42_RS05500 -1.4 -1.4 preprotein translocase subunit SecG compare
RR42_RS06240 -1.4 -1.6 tryptophan--tRNA ligase compare
RR42_RS07385 -1.4 -1.7 Phasin (PHA-granule associated protein) compare
RR42_RS33255 -1.4 -3.1 protein-tyrosine phosphatase compare
RR42_RS03185 -1.4 -2.1 branched-chain amino acid permease compare
RR42_RS14985 -1.4 -1.5 30S ribosomal protein S21 compare
RR42_RS04700 -1.4 -1.2 ribonuclease G compare
RR42_RS06095 -1.3 -3.0 hypothetical protein compare
RR42_RS01915 -1.3 -3.8 cytochrome C oxidase subunit I compare
RR42_RS31435 -1.3 -1.2 hypothetical protein compare
RR42_RS24605 -1.3 -7.8 TetR family transcriptional regulator compare
RR42_RS12050 -1.3 -4.7 DNA polymerase compare
RR42_RS35975 -1.3 -2.3 pilus assembly protein TadC compare
RR42_RS08180 -1.3 -1.4 hypothetical protein compare
RR42_RS10855 -1.3 -1.0 diguanylate phosphodiesterase compare
RR42_RS21825 -1.3 -2.4 hypothetical protein compare
RR42_RS10140 -1.3 -5.8 8-amino-7-oxononanoate synthase compare
RR42_RS28315 -1.3 -2.7 GntR family transcriptional regulator compare
RR42_RS05955 -1.2 -1.0 hypothetical protein compare
RR42_RS21455 -1.2 -1.8 transposase compare
RR42_RS28525 -1.2 -3.3 PadR family transcriptional regulator compare
RR42_RS32445 -1.2 -1.5 shikimate dehydrogenase compare
RR42_RS17105 -1.2 -7.1 Clp protease ClpX compare
RR42_RS21595 -1.2 -4.3 IclR family transcriptional regulator compare
RR42_RS30640 -1.2 -3.5 DNA mismatch repair protein MutT compare
RR42_RS18855 -1.2 -1.6 preprotein translocase compare
RR42_RS03370 -1.2 -1.8 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS00930 -1.2 -5.2 8-amino-7-oxononanoate synthase compare
RR42_RS33210 -1.2 -4.7 teichoic acid biosynthesis protein compare
RR42_RS19755 -1.2 -2.9 exonuclease compare
RR42_RS05810 -1.2 -1.7 RNA polymerase sigma factor compare
RR42_RS33235 -1.2 -5.5 GDP-mannose 4,6-dehydratase compare
RR42_RS06925 -1.2 -1.4 hypothetical protein compare
RR42_RS33245 -1.2 -4.7 mannose-1-phosphate guanyltransferase compare
RR42_RS03875 -1.2 -2.3 nucleoside 2-deoxyribosyltransferase compare
RR42_RS17880 -1.2 -1.2 hypothetical protein compare
RR42_RS03630 -1.2 -1.2 cold-shock protein compare
RR42_RS15410 -1.2 -2.8 membrane protein compare
RR42_RS33575 -1.2 -2.5 hypothetical protein compare
RR42_RS01775 -1.2 -3.5 glutamate--cysteine ligase compare
RR42_RS08470 -1.2 -1.5 hypothetical protein compare
RR42_RS37240 -1.2 -1.0 hypothetical protein compare
RR42_RS02810 -1.1 -2.2 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS21095 -1.1 -2.7 GntR family transcriptional regulator compare
RR42_RS27290 -1.1 -1.9 hypothetical protein compare
RR42_RS21075 -1.1 -1.2 phosphoribosyltransferase compare
RR42_RS21000 -1.1 -1.9 glycosyl transferase compare
RR42_RS15735 -1.1 -4.8 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS08645 -1.1 -2.2 phage capsid scaffolding protein compare
RR42_RS18020 -1.1 -2.6 ornithine acetyltransferase compare
RR42_RS15465 -1.1 -2.1 TonB-dependent receptor compare
RR42_RS04255 -1.1 -1.5 chemotaxis protein CheW compare
RR42_RS15770 -1.1 -2.7 hypothetical protein compare
RR42_RS23515 -1.1 -4.2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS03485 -1.1 -1.9 type VI secretion protein compare
RR42_RS13060 -1.1 -3.8 23S rRNA methyltransferase compare
RR42_RS32850 -1.1 -2.1 universal stress protein UspA compare
RR42_RS08945 -1.1 -0.8 hypothetical protein compare
RR42_RS03375 -1.1 -5.1 glucose-6-phosphate dehydrogenase compare
RR42_RS01895 -1.1 -3.2 MFS transporter compare
RR42_RS01905 -1.1 -2.4 cytochrome C oxidase subunit II compare
RR42_RS21630 -1.1 -1.4 Asp/Glu racemase compare
RR42_RS08030 -1.1 -1.5 hypothetical protein compare
RR42_RS32710 -1.1 -1.2 hypothetical protein compare
RR42_RS31920 -1.1 -1.4 acetyl-CoA acetyltransferase compare
RR42_RS17165 -1.1 -3.2 hypothetical protein compare
RR42_RS22275 -1.1 -1.7 hypothetical protein compare
RR42_RS02315 -1.0 -5.4 threonine dehydratase compare
RR42_RS19635 -1.0 -1.1 hypothetical protein compare
RR42_RS01985 -1.0 -6.4 zinc protease compare
RR42_RS26370 -1.0 -1.5 tautomerase compare
RR42_RS18485 -1.0 -0.8 glutaredoxin compare
RR42_RS05920 -1.0 -2.2 HrcA family transcriptional regulator compare
RR42_RS06335 -1.0 -0.8 cyclophilin compare
RR42_RS07140 -1.0 -0.8 hypothetical protein compare
RR42_RS18520 -1.0 -1.7 hypothetical protein compare
RR42_RS08110 -1.0 -1.3 hypothetical protein compare
RR42_RS17735 -1.0 -2.3 hypothetical protein compare
RR42_RS24760 -1.0 -0.9 hypothetical protein compare
RR42_RS18270 -1.0 -1.3 murein transglycosylase compare
RR42_RS17235 -1.0 -4.2 poly(A) polymerase compare
RR42_RS13655 -1.0 -1.7 glyoxalase compare
RR42_RS13125 -1.0 -2.3 pyrrolo-quinoline quinone compare
RR42_RS19860 -1.0 -1.0 tartronate semialdehyde reductase compare
RR42_RS23635 -1.0 -2.3 flagellar assembly protein FliT compare
RR42_RS07060 -1.0 -2.3 hypothetical protein compare
RR42_RS10590 -1.0 -1.5 hypothetical protein compare
RR42_RS35295 -1.0 -1.3 diguanylate cyclase compare
RR42_RS18820 -0.9 -3.3 cytochrome B compare
RR42_RS06855 -0.9 -2.6 hypothetical protein compare
RR42_RS15785 -0.9 -4.1 glycosyl transferase family 28 compare
RR42_RS02705 -0.9 -1.5 Holliday junction DNA helicase RuvA compare
RR42_RS23355 -0.9 -1.2 flagellar biosynthetic protein FliQ compare
RR42_RS32050 -0.9 -1.7 AraC family transcriptional regulator compare
RR42_RS19825 -0.9 -2.1 LysR family transcriptional regulator compare
RR42_RS32830 -0.9 -1.8 hypothetical protein compare
RR42_RS10135 -0.9 -4.4 biofilm PGA synthesis protein PgaC compare
RR42_RS17305 -0.9 -4.1 ion transporter compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Valeric acid in Cupriavidus basilensis FW507-4G11

For carbon source Valeric acid across organisms