Experiment set10IT048 for Cupriavidus basilensis FW507-4G11

Compare to:

Valeric acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS19750 +1.8 2.5 MBL fold metallo-hydrolase compare
RR42_RS23565 +1.8 1.8 flagellar motor switch protein G compare
RR42_RS30410 +1.6 1.4 hypothetical protein compare
RR42_RS01795 +1.5 13.2 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS19045 +1.5 1.3 frataxin compare
RR42_RS08805 +1.5 2.9 nitrate reductase compare
RR42_RS21040 +1.3 1.2 hypothetical protein compare
RR42_RS09180 +1.2 1.7 Rrf2 family transcriptional regulator compare
RR42_RS21955 +1.2 1.5 hypothetical protein compare
RR42_RS14885 +1.2 3.3 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS35725 +1.2 1.6 flagellar biosynthesis protein FlgB compare
RR42_RS02420 +1.1 1.1 SAM-dependent methyltransferase compare
RR42_RS32740 +1.1 1.3 enoyl-CoA hydratase compare
RR42_RS02140 +1.1 2.2 hypothetical protein compare
RR42_RS11230 +1.1 3.6 peptide ABC transporter ATP-binding protein compare
RR42_RS01785 +1.1 3.8 PTS fructose transporter subunit IIA compare
RR42_RS15120 +1.1 1.8 4-oxalocrotonate tautomerase compare
RR42_RS07615 +1.0 2.8 3-ketoacyl-ACP reductase compare
RR42_RS34945 +1.0 2.9 bb3-type cytochrome oxidase subunit III compare
RR42_RS15160 +1.0 4.0 membrane protein compare
RR42_RS03530 +1.0 1.2 hypothetical protein compare
RR42_RS22295 +1.0 1.8 methionine sulfoxide reductase B compare
RR42_RS04770 +1.0 1.2 methylglyoxal synthase compare
RR42_RS13455 +1.0 3.4 phosphate ABC transporter ATP-binding protein compare
RR42_RS26435 +0.9 3.3 ferredoxin compare
RR42_RS12155 +0.9 1.9 molecular chaperone compare
RR42_RS06710 +0.9 1.8 hypothetical protein compare
RR42_RS27790 +0.9 2.1 LuxR family transcriptional regulator compare
RR42_RS08425 +0.9 1.8 hypothetical protein compare
RR42_RS28085 +0.9 2.0 alkylphosphonate utilization protein PhnG compare
RR42_RS08075 +0.9 2.7 hypothetical protein compare
RR42_RS00475 +0.9 2.0 ATPase P compare
RR42_RS27695 +0.9 2.2 polyketide cyclase compare
RR42_RS31910 +0.9 1.8 acyl-CoA dehydrogenase compare
RR42_RS23870 +0.9 2.3 hypothetical protein compare
RR42_RS31490 +0.9 2.2 hypothetical protein compare
RR42_RS26265 +0.8 1.0 hypothetical protein compare
RR42_RS25455 +0.8 1.6 acetyl-CoA acetyltransferase compare
RR42_RS20810 +0.8 1.8 hypothetical protein compare
RR42_RS20340 +0.8 2.9 LysR family transcriptional regulator compare
RR42_RS19720 +0.8 1.8 cytochrome C553 compare
RR42_RS30975 +0.8 2.3 blue copper protein compare
RR42_RS30735 +0.8 1.3 tRNA-Met compare
RR42_RS17805 +0.8 0.9 hypothetical protein compare
RR42_RS36715 +0.8 2.3 alanine acetyltransferase compare
RR42_RS33070 +0.8 3.0 oxidoreductase compare
RR42_RS30340 +0.8 1.5 ABC transporter permease compare
RR42_RS05840 +0.8 2.1 GCN5 family acetyltransferase compare
RR42_RS01485 +0.8 1.3 phosphonate transporter compare
RR42_RS07130 +0.8 1.5 hypothetical protein compare
RR42_RS03940 +0.8 0.6 membrane protein compare
RR42_RS01195 +0.8 2.4 excinuclease ATPase compare
RR42_RS05100 +0.8 2.5 acetaldehyde dehydrogenase compare
RR42_RS10415 +0.8 1.0 hypothetical protein compare
RR42_RS14125 +0.8 1.7 metal-binding protein compare
RR42_RS21765 +0.8 1.9 3-oxoacyl-ACP reductase compare
RR42_RS09470 +0.8 1.5 2-dehydro-3-deoxygluconokinase compare
RR42_RS34425 +0.7 2.7 hypothetical protein compare
RR42_RS19820 +0.7 1.8 membrane protein compare
RR42_RS23110 +0.7 1.0 isochorismatase compare
RR42_RS28920 +0.7 1.7 hypothetical protein compare
RR42_RS03040 +0.7 3.9 Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) (from data) compare
RR42_RS28720 +0.7 1.2 hypothetical protein compare
RR42_RS14480 +0.7 1.7 hypothetical protein compare
RR42_RS03725 +0.7 2.8 magnesium transporter CorA compare
RR42_RS26925 +0.7 1.4 membrane protein compare
RR42_RS29365 +0.7 2.2 ArsR family transcriptional regulator compare
RR42_RS27065 +0.7 1.2 hypothetical protein compare
RR42_RS34935 +0.7 1.2 cytochrome C oxidase subunit IV compare
RR42_RS29450 +0.7 2.7 ABC transporter compare
RR42_RS22135 +0.7 1.6 cytochrome C compare
RR42_RS24460 +0.7 1.8 hypothetical protein compare
RR42_RS30955 +0.7 3.1 histidine kinase compare
RR42_RS26635 +0.7 2.0 2-hydroxyacid dehydrogenase compare
RR42_RS33540 +0.7 2.4 adenylylsulfate kinase compare
RR42_RS07630 +0.7 1.2 methyltransferase type 12 compare
RR42_RS10675 +0.7 2.1 hypothetical protein compare
RR42_RS06785 +0.7 1.2 hypothetical protein compare
RR42_RS28090 +0.7 3.0 carbon-phosphorus lyase compare
RR42_RS21150 +0.7 1.2 hypothetical protein compare
RR42_RS02930 +0.7 1.4 AsnC family transcriptional regulator compare
RR42_RS05230 +0.7 3.0 LysR family transcriptional regulator compare
RR42_RS02270 +0.7 1.0 hypothetical protein compare
RR42_RS32090 +0.7 1.1 hypothetical protein compare
RR42_RS26725 +0.7 1.6 diguanylate cyclase compare
RR42_RS34395 +0.6 1.0 hypothetical protein compare
RR42_RS24880 +0.6 2.5 hypothetical protein compare
RR42_RS05760 +0.6 2.9 3-hydroxyacyl-CoA dehydrogenase compare
RR42_RS06900 +0.6 2.3 hypothetical protein compare
RR42_RS18120 +0.6 1.3 cell division protein MraZ compare
RR42_RS26200 +0.6 1.0 hypothetical protein compare
RR42_RS21360 +0.6 2.2 ABC transporter permease compare
RR42_RS02470 +0.6 1.1 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS35250 +0.6 1.0 alpha/beta hydrolase compare
RR42_RS03030 +0.6 3.6 required for 4-hydroxybenzoate transport, together with NodT, MFP, and FUSC proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03025) (from data) compare
RR42_RS23305 +0.6 0.7 hypothetical protein compare
RR42_RS08000 +0.6 0.7 hypothetical protein compare
RR42_RS27285 +0.6 2.1 hypothetical protein compare
RR42_RS03715 +0.6 2.0 inositol monophosphatase compare
RR42_RS32665 +0.6 1.9 phenol hydroxylase compare
RR42_RS20640 +0.6 2.1 TetR family transcriptional regulator compare
RR42_RS15015 +0.6 0.5 exodeoxyribonuclease VII small subunit compare
RR42_RS25470 +0.6 1.0 alpha/beta hydrolase compare
RR42_RS06345 +0.6 2.1 hypothetical protein compare
RR42_RS04325 +0.6 1.2 membrane protein compare
RR42_RS27700 +0.6 1.3 hypothetical protein compare
RR42_RS28735 +0.6 1.9 hemolysin III compare
RR42_RS21140 +0.6 2.0 LysR family transcriptional regulator compare
RR42_RS36350 +0.6 1.2 D-amino acid oxidase compare
RR42_RS36335 +0.6 0.9 enoyl-CoA hydratase compare
RR42_RS04980 +0.6 1.5 hypothetical protein compare
RR42_RS29780 +0.6 1.5 hypothetical protein compare
RR42_RS20440 +0.6 0.8 histidine kinase compare
RR42_RS23920 +0.6 0.8 hypothetical protein compare
RR42_RS29505 +0.6 1.1 hypothetical protein compare
RR42_RS36555 +0.6 2.0 MFS transporter compare
RR42_RS23485 +0.6 2.2 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
RR42_RS16565 +0.6 2.0 hypothetical protein compare
RR42_RS36315 +0.6 2.1 fructose 2,6-bisphosphatase compare
RR42_RS07950 +0.6 2.6 ABC transporter substrate-binding protein compare
RR42_RS34525 +0.6 1.8 type VI secretion protein VasK compare
RR42_RS33440 +0.6 1.1 LysR family transcriptional regulator compare
RR42_RS07240 +0.6 1.0 hypothetical protein compare
RR42_RS24985 +0.6 1.8 hypothetical protein compare
RR42_RS01185 +0.6 4.6 muropeptide transporter compare
RR42_RS13460 +0.6 2.6 phosphate transporter permease subunit PtsA compare
RR42_RS32555 +0.6 1.4 nitrilotriacetate monooxygenase compare
RR42_RS06430 +0.6 1.3 hypothetical protein compare
RR42_RS21080 +0.6 1.8 3-isopropylmalate dehydratase compare
RR42_RS22335 +0.6 2.6 hemagglutinin compare
RR42_RS09495 +0.6 1.2 LacI family transcriptional regulator compare
RR42_RS34265 +0.6 2.2 acetaldehyde dehydrogenase compare
RR42_RS00785 +0.6 1.4 LuxR family transcriptional regulator compare
RR42_RS03330 +0.6 1.8 GYD family protein compare
RR42_RS07295 +0.6 1.2 LysR family transcriptional regulator compare
RR42_RS03025 +0.6 3.9 Inner membrane protein (FUSC-like) required for 4-hydroxybenzoate transport, together with NodT, MFP, and DUF1656 proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03030) (from data) compare
RR42_RS01405 +0.6 4.4 lytic transglycosylase compare
RR42_RS23345 +0.6 2.3 hypothetical protein compare
RR42_RS26485 +0.6 1.7 2,5-dihydroxypyridine 5,6-dioxygenase compare
RR42_RS22925 +0.6 2.4 RND transporter compare
RR42_RS22030 +0.6 0.9 hypothetical protein compare
RR42_RS03320 +0.6 1.8 transcriptional regulator compare
RR42_RS31985 +0.6 2.0 short-chain dehydrogenase compare
RR42_RS37245 +0.5 2.0 MazF family transcriptional regulator compare
RR42_RS25735 +0.5 2.3 chemotaxis protein compare
RR42_RS08970 +0.5 2.2 XRE family transcriptional regulator compare
RR42_RS16375 +0.5 2.4 short-chain dehydrogenase compare
RR42_RS24500 +0.5 3.3 hypothetical protein compare
RR42_RS34680 +0.5 0.8 short-chain dehydrogenase compare
RR42_RS36630 +0.5 2.6 ABC transporter substrate-binding protein compare
RR42_RS35775 +0.5 1.9 chemotaxis protein CheZ compare
RR42_RS26580 +0.5 0.8 hypothetical protein compare
RR42_RS07255 +0.5 1.1 hypothetical protein compare
RR42_RS10920 +0.5 0.5 hypothetical protein compare
RR42_RS19830 +0.5 0.9 LysR family transcriptional regulator compare
RR42_RS12110 +0.5 2.7 monooxygenase compare
RR42_RS05310 +0.5 1.5 hypothetical protein compare
RR42_RS24520 +0.5 1.6 hypothetical protein compare
RR42_RS09565 +0.5 1.1 hypothetical protein compare
RR42_RS07815 +0.5 1.9 glutamine ABC transporter ATP-binding protein compare
RR42_RS14905 +0.5 1.4 hypothetical protein compare
RR42_RS12305 +0.5 0.5 hypothetical protein compare
RR42_RS06435 +0.5 2.1 2-hydroxyacid dehydrogenase compare
RR42_RS09850 +0.5 1.2 hypothetical protein compare
RR42_RS29295 +0.5 1.9 hypothetical protein compare
RR42_RS16780 +0.5 1.7 hypothetical protein compare
RR42_RS24930 +0.5 0.6 AraC family transcriptional regulator compare
RR42_RS16125 +0.5 1.4 Cob(I)yrinic acid a,c-diamide adenosyltransferase compare
RR42_RS05135 +0.5 2.5 dihydrodipicolinate synthetase compare
RR42_RS25965 +0.5 2.2 LuxR family transcriptional regulator compare
RR42_RS34275 +0.5 1.3 virulence protein compare
RR42_RS22915 +0.5 1.4 ABC transporter permease compare
RR42_RS30800 +0.5 3.1 sugar ABC transporter ATP-binding protein compare
RR42_RS25625 +0.5 0.7 LysR family transcriptional regulator compare
RR42_RS27095 +0.5 1.2 hypothetical protein compare
RR42_RS22635 +0.5 1.3 membrane protein compare
RR42_RS26555 +0.5 1.0 tRNA-Met compare
RR42_RS31995 +0.5 0.9 flavin reductase compare
RR42_RS32020 +0.5 2.9 hypothetical protein compare
RR42_RS32350 +0.5 1.0 integral membrane protein compare
RR42_RS17555 +0.5 0.9 hypothetical protein compare
RR42_RS08045 +0.5 1.5 hypothetical protein compare
RR42_RS08865 +0.5 1.0 hydroxylase compare
RR42_RS12100 +0.5 2.0 monooxygenase compare
RR42_RS31790 +0.5 0.7 nitrite reductase compare
RR42_RS15970 +0.5 1.0 lipoprotein compare
RR42_RS34280 +0.5 2.3 hypothetical protein compare
RR42_RS13610 +0.5 2.0 IclR family transcriptional regulator compare
RR42_RS02685 +0.5 1.9 phosphoglycerate mutase compare
RR42_RS27245 +0.5 1.6 hypothetical protein compare
RR42_RS05700 +0.5 2.3 hypothetical protein compare
RR42_RS14880 +0.5 1.4 hypothetical protein compare
RR42_RS16625 +0.5 1.9 hypothetical protein compare
RR42_RS29090 +0.5 2.0 galactarate dehydrogenase compare
RR42_RS27465 +0.5 2.4 ionic transporter y4hA compare
RR42_RS31900 +0.5 1.1 short-chain dehydrogenase compare
RR42_RS25030 +0.5 0.7 ABC transporter permease compare
RR42_RS14990 +0.5 1.2 membrane protein compare
RR42_RS26425 +0.5 1.1 biphenyl 2,3-dioxygenase compare
RR42_RS15875 +0.5 2.0 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Valeric acid in Cupriavidus basilensis FW507-4G11

For carbon source Valeric acid across organisms