Experiment set10IT047 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sodium D,L-Lactate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_03749 +1.5 2.5 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_00540 +1.4 2.3 tRNA/rRNA methyltransferase compare
H281DRAFT_04880 +1.2 4.0 PRC-barrel domain-containing protein compare
H281DRAFT_03348 +1.2 2.3 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_02906 +1.1 5.2 transcriptional regulator, GntR family conserved
H281DRAFT_05755 +1.1 2.9 flagellar biosynthesis protein FlhG compare
H281DRAFT_02007 +1.1 10.1 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_00379 +1.0 1.5 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_01632 +1.0 9.3 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_02798 +1.0 2.7 hypothetical protein compare
H281DRAFT_03583 +1.0 2.6 hypothetical protein compare
H281DRAFT_01706 +0.9 2.1 transcriptional regulator, MarR family compare
H281DRAFT_01382 +0.9 2.1 Cellulose biosynthesis protein BcsR compare
H281DRAFT_04250 +0.9 3.8 DNA-binding protein Fis compare
H281DRAFT_03451 +0.9 3.3 ABC-2 type transport system ATP-binding protein compare
H281DRAFT_04369 +0.9 3.4 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_03324 +0.8 2.6 Low affinity Fe/Cu permease compare
H281DRAFT_05934 +0.8 1.3 Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains compare
H281DRAFT_01343 +0.8 3.2 3-methylcrotonoyl-CoA carboxylase, alpha subunit compare
H281DRAFT_05944 +0.8 2.3 DNA-binding transcriptional regulator, FadR family compare
H281DRAFT_00469 +0.8 2.3 phasin family protein compare
H281DRAFT_03315 +0.8 1.8 HSP20 family protein compare
H281DRAFT_01675 +0.8 3.6 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_03306 +0.8 2.7 Cytochrome c, mono- and diheme variants compare
H281DRAFT_06568 +0.8 1.4 DNA-binding protein H-NS compare
H281DRAFT_06297 +0.8 1.7 L-arabinose-binding protein compare
H281DRAFT_05544 +0.8 1.2 NitT/TauT family transport system permease protein compare
H281DRAFT_05762 +0.7 3.4 flagellar basal-body rod protein FlgB compare
H281DRAFT_05185 +0.7 2.5 hypothetical protein compare
H281DRAFT_03118 +0.7 1.9 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_02352 +0.7 2.7 general secretion pathway protein G compare
H281DRAFT_03159 +0.7 1.4 hypothetical protein compare
H281DRAFT_00255 +0.7 1.5 hypothetical protein compare
H281DRAFT_03978 +0.7 1.8 histidine ammonia-lyase compare
H281DRAFT_03790 +0.7 1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_05877 +0.7 2.5 RND family efflux transporter, MFP subunit compare
H281DRAFT_00506 +0.7 1.3 Zn-dependent protease (includes SpoIVFB) compare
H281DRAFT_01028 +0.7 1.5 peptide/nickel transport system permease protein compare
H281DRAFT_03414 +0.7 1.3 outer membrane surface antigen compare
H281DRAFT_05774 +0.7 2.7 flagellar biosynthetic protein FliR compare
H281DRAFT_06346 +0.7 1.3 Predicted deacylase compare
H281DRAFT_06102 +0.7 2.1 peptide/nickel transport system permease protein compare
H281DRAFT_03087 +0.7 2.8 hypothetical protein compare
H281DRAFT_05754 +0.7 1.9 flagellar biosynthesis protein FlhF compare
H281DRAFT_04047 +0.7 3.0 glutathione transport system permease protein compare
H281DRAFT_02148 +0.7 1.5 cytochrome c compare
H281DRAFT_00918 +0.7 2.1 Conserved secreted protein compare
H281DRAFT_04800 +0.7 1.2 protein SCO1/2 compare
H281DRAFT_02832 +0.7 1.7 hypothetical protein compare
H281DRAFT_03278 +0.7 1.2 Threonine dehydrogenase compare
H281DRAFT_06276 +0.7 4.0 hypothetical protein compare
H281DRAFT_02931 +0.7 4.5 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_03444 +0.7 4.0 Sugar-transfer associated ATP-grasp compare
H281DRAFT_05765 +0.7 4.7 flagellar hook protein FlgE compare
H281DRAFT_06528 +0.7 1.7 cobalt-precorrin 5A hydrolase compare
H281DRAFT_02008 +0.7 3.4 phosphocarrier protein compare
H281DRAFT_02846 +0.7 1.7 Uncharacterized conserved protein YndB, AHSA1/START domain compare
H281DRAFT_05246 +0.7 2.8 Predicted membrane protein compare
H281DRAFT_00853 +0.6 1.4 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_06480 +0.6 1.0 arginine succinyltransferase compare
H281DRAFT_05022 +0.6 1.9 two component transcriptional regulator, LuxR family compare
H281DRAFT_06046 +0.6 1.2 serine/threonine protein phosphatase 1 compare
H281DRAFT_05389 +0.6 1.2 protein of unknown function (DUF3331) compare
H281DRAFT_02934 +0.6 2.4 hypothetical protein compare
H281DRAFT_06277 +0.6 2.7 hypothetical protein compare
H281DRAFT_03585 +0.6 1.4 Polyisoprenoid-binding protein YceI compare
H281DRAFT_01319 +0.6 1.2 Uncharacterized protein, UPF0264 family compare
H281DRAFT_00147 +0.6 1.7 uncharacterized domain 1-containing protein compare
H281DRAFT_05248 +0.6 1.5 hypothetical protein compare
H281DRAFT_05642 +0.6 2.2 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
H281DRAFT_02459 +0.6 1.9 sarcosine oxidase subunit gamma compare
H281DRAFT_04236 +0.6 2.1 Predicted ring-cleavage extradiol dioxygenase compare
H281DRAFT_05215 +0.6 2.1 Uncharacterized membrane protein YhfC compare
H281DRAFT_03199 +0.6 3.6 flagellar transcriptional activator FlhD compare
H281DRAFT_03011 +0.6 3.2 NAD(P) transhydrogenase subunit beta compare
H281DRAFT_01505 +0.6 1.2 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_03293 +0.6 2.9 Ferritin-like metal-binding protein YciE compare
H281DRAFT_03266 +0.6 1.1 Nicotinamidase-related amidase compare
H281DRAFT_03831 +0.6 1.6 heat shock protein Hsp20 compare
H281DRAFT_01711 +0.6 2.2 Na/Pi-cotransporter compare
H281DRAFT_05776 +0.6 2.1 flagellar biosynthetic protein FliP compare
H281DRAFT_01717 +0.6 1.6 L-alanine-DL-glutamate epimerase compare
H281DRAFT_01827 +0.6 0.9 hypothetical protein compare
H281DRAFT_01449 +0.6 2.5 RIO kinase 1 compare
H281DRAFT_05766 +0.6 1.2 flagellar basal-body rod protein FlgF compare
H281DRAFT_05781 +0.6 2.6 flagellar hook-length control protein FliK compare
H281DRAFT_01019 +0.6 2.5 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03021 +0.6 1.7 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_03390 +0.6 0.9 H+/Cl- antiporter ClcA compare
H281DRAFT_00281 +0.6 1.5 Spermidine synthase compare
H281DRAFT_04535 +0.6 1.3 quaternary ammonium compound-resistance protein SugE compare
H281DRAFT_01419 +0.6 1.8 Protein of unknown function (DUF2945) compare
H281DRAFT_00522 +0.6 1.6 GTP-binding protein HflX compare
H281DRAFT_03438 +0.6 2.8 polysaccharide transporter, PST family compare
H281DRAFT_04721 +0.6 0.9 Cell division and transport-associated protein TolR compare
H281DRAFT_06562 +0.6 1.3 hypothetical protein compare
H281DRAFT_04337 +0.6 1.7 molybdenum cofactor guanylyltransferase (EC 2.7.7.77) compare
H281DRAFT_01923 +0.5 2.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) compare
H281DRAFT_04691 +0.5 4.5 glutamate-ammonia-ligase adenylyltransferase compare
H281DRAFT_02599 +0.5 1.5 hypothetical protein compare
H281DRAFT_04713 +0.5 2.0 membrane-associated protein compare
H281DRAFT_06438 +0.5 1.2 hypothetical protein compare
H281DRAFT_05785 +0.5 3.3 flagellar motor switch protein FliG compare
H281DRAFT_05779 +0.5 3.9 flagellar motor switch protein FliM compare
H281DRAFT_04598 +0.5 2.1 putative toxin-antitoxin system toxin component, PIN family compare
H281DRAFT_06429 +0.5 1.6 molybdenum-pterin binding domain-containing protein compare
H281DRAFT_06555 +0.5 1.0 hypothetical protein compare
H281DRAFT_03805 +0.5 3.9 Taurine dioxygenase, alpha-ketoglutarate-dependent compare
H281DRAFT_00168 +0.5 2.0 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_01659 +0.5 1.7 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05892 +0.5 2.4 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
H281DRAFT_00722 +0.5 1.2 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_03351 +0.5 1.9 transcriptional regulator, IclR family compare
H281DRAFT_06100 +0.5 1.6 peptide/nickel transport system substrate-binding protein compare
H281DRAFT_05770 +0.5 3.7 flagellar protein FlgJ compare
H281DRAFT_01065 +0.5 1.8 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_04754 +0.5 3.0 xanthine dehydrogenase accessory protein XdhC compare
H281DRAFT_03069 +0.5 0.8 Uncharacterized conserved protein compare
H281DRAFT_04246 +0.5 1.9 glutathione S-transferase compare
H281DRAFT_06010 +0.5 1.9 hypothetical protein compare
H281DRAFT_03821 +0.5 2.2 serine/threonine protein kinase compare
H281DRAFT_03576 +0.5 1.1 two-component system, chemotaxis family, response regulator CheY compare
H281DRAFT_03285 +0.5 2.4 lipopolysaccharide heptosyltransferase II compare
H281DRAFT_05752 +0.5 3.3 flagellar biosynthetic protein FlhB compare
H281DRAFT_04589 +0.5 3.0 Acyl dehydratase compare
H281DRAFT_00408 +0.5 1.5 Protein of unknown function (DUF1328) compare
H281DRAFT_01098 +0.5 1.6 hypothetical protein compare
H281DRAFT_01216 +0.5 2.6 hypothetical protein compare
H281DRAFT_03198 +0.5 3.4 flagellar transcriptional activator FlhC compare
H281DRAFT_03915 +0.5 1.4 UDPglucose 6-dehydrogenase compare
H281DRAFT_00885 +0.5 2.5 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_03264 +0.5 2.5 methylmalonate-semialdehyde dehydrogenase [acylating] compare
H281DRAFT_03385 +0.5 1.3 NADPH2 dehydrogenase compare
H281DRAFT_00248 +0.5 1.1 hypothetical protein compare
H281DRAFT_03809 +0.5 2.4 transcriptional regulator, LysR family compare
H281DRAFT_04100 +0.5 1.7 Protein of unknown function (DUF2917) compare
H281DRAFT_05322 +0.5 2.3 gluconolactonase (EC 3.1.1.17) compare
H281DRAFT_03263 +0.5 2.4 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_04889 +0.5 1.1 hypothetical protein compare
H281DRAFT_03374 +0.5 2.3 hypothetical protein compare
H281DRAFT_04226 +0.5 0.9 hypothetical protein compare
H281DRAFT_03574 +0.5 2.3 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_00773 +0.5 1.5 nodulation factor export ABC transporter ATP-binding protein NodI compare
H281DRAFT_03065 +0.5 2.5 MFS transporter, DHA1 family, multidrug resistance protein compare
H281DRAFT_01390 +0.5 1.0 hypothetical protein compare
H281DRAFT_05335 +0.5 1.9 Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD compare
H281DRAFT_00092 +0.5 1.8 amino acid/amide ABC transporter membrane protein 2, HAAT family compare
H281DRAFT_05330 +0.5 1.1 urea transporter compare
H281DRAFT_05528 +0.5 2.1 hypothetical protein compare
H281DRAFT_03147 +0.5 1.1 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_02366 +0.5 3.4 hypothetical protein compare
H281DRAFT_03866 +0.5 1.9 transcriptional regulator, LysR family compare
H281DRAFT_06490 +0.5 1.2 hypothetical protein compare
H281DRAFT_05977 +0.5 1.3 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_02747 +0.5 1.6 hypothetical protein compare
H281DRAFT_04993 +0.5 1.3 hypothetical protein compare
H281DRAFT_06459 +0.5 1.6 flagellar motor switch protein FliG compare
H281DRAFT_03345 +0.5 2.0 NHL repeat-containing protein compare
H281DRAFT_03137 +0.5 1.8 putative proteasome-type protease compare
H281DRAFT_05634 +0.5 2.1 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02743 +0.5 1.1 protein of unknown function (DUF4148) compare
H281DRAFT_00075 +0.5 0.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01275 +0.5 2.3 MFS transporter, AAHS family, 3-hydroxyphenylpropionic acid transporter compare
H281DRAFT_03012 +0.5 2.4 hypothetical protein compare
H281DRAFT_06021 +0.5 2.1 NADH dehydrogenase compare
H281DRAFT_00998 +0.5 0.7 outer membrane protein, multidrug efflux system compare
H281DRAFT_03733 +0.5 1.0 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_01187 +0.5 1.0 short chain enoyl-CoA hydratase (EC 4.2.1.17) compare
H281DRAFT_01257 +0.5 1.3 Catechol 2,3-dioxygenase compare
H281DRAFT_03221 +0.5 1.3 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_03207 +0.5 2.0 MFS transporter, DHA2 family, methylenomycin A resistance protein compare
H281DRAFT_05474 +0.5 1.7 Gluconate 2-dehydrogenase subunit 3 compare
H281DRAFT_04982 +0.5 1.2 transcriptional regulator, MerR family compare
H281DRAFT_04966 +0.5 2.4 putative redox protein compare
H281DRAFT_04628 +0.5 1.4 FdhD protein compare
H281DRAFT_02474 +0.5 1.7 electron transfer flavoprotein beta subunit compare
H281DRAFT_01905 +0.5 2.3 hypothetical protein compare
H281DRAFT_05514 +0.5 1.6 branched-chain amino acid transport system permease protein compare
H281DRAFT_05243 +0.5 1.4 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_01489 +0.5 1.8 hypothetical protein compare
H281DRAFT_04661 +0.5 1.2 paraquat-inducible protein A compare
H281DRAFT_05419 +0.5 2.0 hypothetical protein compare
H281DRAFT_05986 +0.5 1.4 transcriptional regulator, TetR family compare
H281DRAFT_04532 +0.5 2.7 two-component system, OmpR family, sensor histidine kinase KdpD compare
H281DRAFT_04368 +0.4 2.9 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_05786 +0.4 3.4 flagellar M-ring protein FliF compare
H281DRAFT_06544 +0.4 2.5 catalase compare
H281DRAFT_05969 +0.4 2.7 Uncharacterized proteins of the AP superfamily compare
H281DRAFT_05045 +0.4 1.8 amidase compare
H281DRAFT_03396 +0.4 1.1 AraC-type DNA-binding protein compare
H281DRAFT_03968 +0.4 2.0 hypothetical protein compare
H281DRAFT_01237 +0.4 0.8 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
H281DRAFT_00422 +0.4 1.1 hypothetical protein compare
H281DRAFT_03015 +0.4 1.9 transcriptional regulator, LysR family compare
H281DRAFT_04861 +0.4 1.6 starch synthase compare
H281DRAFT_02156 +0.4 2.9 transcriptional regulator, AsnC family compare
H281DRAFT_03340 +0.4 1.7 hypothetical protein compare
H281DRAFT_00066 +0.4 1.2 hypothetical protein compare
H281DRAFT_06109 +0.4 1.5 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03403 +0.4 2.3 Predicted ATPase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium D,L-Lactate in Paraburkholderia bryophila 376MFSha3.1

For carbon source Sodium D,L-Lactate across organisms