Experiment set10IT047 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Varel_Bryant_medium_Glucose with Lincomycin hydrochloride 0.0015625 mM

200 most important genes:

  gene name fitness t score description  
BT3320 -4.5 -5.3 dihydrodipicolinate reductase (NCBI ptt file) compare
BT2837 -4.3 -12.6 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT2402 -4.0 -4.8 homoserine phosphotransferase HomK (from data) compare
BT3918 -4.0 -3.9 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT3733 -4.0 -4.8 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT2074 -3.9 -3.8 ketol-acid reductoisomerase (NCBI ptt file) compare
BT3395 -3.9 -6.5 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT3757 -3.8 -6.4 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT3761 -3.8 -2.6 N-succinylglutamate synthase (from data) compare
BT2401 -3.8 -6.8 threonine synthase (NCBI ptt file) compare
BT3759 -3.7 -5.7 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT1857 -3.7 -4.4 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT3193 -3.7 -12.8 putative coenzyme A transferase (NCBI ptt file) compare
BT1377 -3.7 -2.5 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT1746 -3.6 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT1860 -3.6 -2.5 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT2836 -3.6 -14.4 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT0532 -3.6 -4.2 anthranilate synthase component I (NCBI ptt file) compare
BT3718 -3.5 -7.8 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT2415 -3.5 -9.9 aspartate aminotransferase (NCBI ptt file) compare
BT1379 -3.5 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT2403 -3.4 -5.7 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT2078 -3.4 -7.2 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT3933 -3.3 -4.6 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT1374 -3.3 -2.3 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT3549 -3.3 -2.3 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT1983 -3.3 -6.9 hemolysin III (NCBI ptt file) compare
BT0202 -3.2 -2.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT3164 -3.2 -8.8 quinolinate synthetase A (NCBI ptt file) compare
BT0892 -3.2 -2.1 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT3184 -3.2 -14.8 L-aspartate oxidase (NCBI ptt file) compare
BT3760 -3.2 -3.7 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT1861 -3.2 -3.1 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT0528 -3.1 -2.1 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT1843 -3.1 -4.2 adenylosuccinate synthetase (NCBI ptt file) compare
BT3361 -3.1 -4.2 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT1375 -3.0 -12.5 aspartokinase (NCBI ptt file) compare
BT2076 -3.0 -3.0 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT3758 -2.9 -2.8 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT1153 -2.9 -2.0 phosphoserine aminotransferase (NCBI ptt file) compare
BT1859 -2.8 -1.9 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT3719 -2.8 -4.2 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT2077 -2.8 -2.7 acetolactate synthase large subunit (NCBI ptt file) compare
BT1607 -2.7 -1.9 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT3717 -2.7 -2.6 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT1858 -2.6 -4.4 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT0200 -2.6 -1.8 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT3980 -2.6 -1.8 hypothetical protein (NCBI ptt file) compare
BT3253 -2.6 -1.8 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT0738 -2.5 -1.7 serine hydroxymethyltransferase (NCBI ptt file) compare
BT0527 -2.5 -1.7 tryptophan synthase alpha chain (NCBI ptt file) compare
BT1270 -2.5 -2.4 putative Na+/H+ antiporter (NCBI ptt file) compare
BT0891 -2.5 -1.7 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT2417 -2.5 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT2129 -2.4 -3.7 aspartate--ammonia ligase (NCBI ptt file) compare
BT0530 -2.4 -2.8 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT0201 -2.4 -2.8 histidinol dehydrogenase (NCBI ptt file) compare
BT1970 -2.4 -8.6 glutamate dehydrogenase (NCBI ptt file) compare
BT2843 -2.3 -4.0 integrase (NCBI ptt file) compare
BT0700 -2.3 -3.4 GTP pyrophosphokinase (NCBI ptt file) compare
BT3394 -2.3 -9.9 putative arginine decarboxylase (NCBI ptt file) compare
BT1476 -2.2 -3.0 aspartate aminotransferase (NCBI ptt file) compare
BT1381 -2.2 -3.6 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT1733 -2.1 -2.5 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT4255 -2.1 -2.7 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) compare
BT0533 -2.0 -1.4 tryptophan synthase beta chain (NCBI ptt file) compare
BT0529 -2.0 -1.3 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT0519 -1.9 -3.8 hypothetical protein (NCBI ptt file) compare
BT1378 -1.9 -2.2 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT3224 -1.9 -3.1 putative lysine decarboxylase (NCBI ptt file) compare
BT3211 -1.8 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT3936 -1.8 -1.2 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT2546 -1.8 -8.3 transcriptional regulator (NCBI ptt file) compare
BT1844 -1.8 -3.6 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT4211 -1.8 -1.7 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT2003 -1.8 -1.6 putative membrane peptidase (NCBI ptt file) compare
BT0531 -1.8 -2.3 anthranilate synthase component II (NCBI ptt file) compare
BT1979 -1.8 -2.6 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT2173 -1.8 -6.1 hypothetical protein (NCBI ptt file) compare
BT1421 -1.7 -3.2 hypothetical protein (NCBI ptt file) compare
BT1220 -1.7 -1.9 6-phosphogluconolactonase (NCBI ptt file) compare
BT1698 -1.7 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT4339 -1.7 -1.9 glutamine synthetase (NCBI ptt file) compare
BT2142 -1.6 -1.1 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT0545 -1.6 -2.0 nitrogen regulatory protein P-II (NCBI ptt file) compare
BT1336 -1.6 -3.4 putative translation initiation inhibitor (NCBI ptt file) compare
BT0704 -1.5 -1.7 phosphoribosylglycinamide formyltransferase 2 (NCBI ptt file) compare
BT1152 -1.5 -1.1 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT0875 -1.5 -4.4 beta-ureidopropionase (NCBI ptt file) compare
BT1539 -1.5 -2.7 cytidine deaminase (NCBI ptt file) compare
BT2080 -1.5 -2.8 L-cysteine desulfidase cdsB (from data) compare
BT0203 -1.5 -1.0 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT3372 -1.5 -3.9 glycosyltransferase (NCBI ptt file) compare
BT3373 -1.4 -2.7 spermidine n1-acetyltransferase (NCBI ptt file) compare
BT3223 -1.4 -2.5 hypothetical protein (NCBI ptt file) compare
BT3220 -1.4 -7.1 TPR-repeat-containing protein (NCBI ptt file) compare
BT3783 -1.4 -3.8 conserved hypothetical protein (NCBI ptt file) compare
BT4002 -1.4 -1.5 ATPase, ParA family (NCBI ptt file) compare
BT1080 -1.4 -2.0 hypothetical protein (NCBI ptt file) compare
BT4191 -1.4 -6.9 hypothetical protein (NCBI ptt file) compare
BT1608 -1.4 -4.5 capsule biosynthesis protein capA (NCBI ptt file) compare
BT3035 -1.4 -6.8 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT1752 -1.4 -0.9 hypothetical protein (NCBI ptt file) compare
BT4349 -1.4 -2.7 hypothetical protein (NCBI ptt file) compare
BT3935 -1.3 -2.8 aminotransferase (NCBI ptt file) compare
BT1193 -1.3 -3.2 conserved hypothetical protein (NCBI ptt file) compare
BT1854 -1.3 -0.9 putative membrane-associated phospholipid phosphatase (NCBI ptt file) compare
BT0175 -1.3 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT3554 -1.3 -3.1 conserved hypothetical protein (NCBI ptt file) compare
BT0631 -1.3 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT2172 -1.3 -6.9 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT1309 -1.3 -2.8 hypothetical protein (NCBI ptt file) compare
BT0771 -1.3 -3.2 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT4562 -1.3 -1.1 hypothetical protein (NCBI ptt file) compare
BT4571 -1.3 -1.9 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT2418 -1.3 -2.9 hypothetical protein (NCBI ptt file) compare
BT0215 -1.2 -1.4 iron uptake regulatory protein (NCBI ptt file) compare
BT1234 -1.2 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT1837 -1.2 -4.4 putative GTP-binding protein, putative GTPase (NCBI ptt file) compare
BT1402 -1.2 -2.5 iron-sulfur flavoprotein (NCBI ptt file) compare
BT4177 -1.2 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT1947 -1.2 -1.0 hypothetical protein (NCBI ptt file) compare
BT_2008 -1.2 -1.9 hypothetical protein (RefSeq) compare
BT1894 -1.2 -4.0 TPR-repeat-containing proteins (NCBI ptt file) compare
BT4237 -1.2 -3.3 tRNA pseudouridine synthase A (NCBI ptt file) compare
BT1356 -1.2 -2.7 putative capsule polysaccharide export protein (NCBI ptt file) compare
BT1221 -1.2 -2.7 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT3371 -1.2 -2.6 putative glycosyltransferase yibD (NCBI ptt file) compare
BT1252 -1.1 -2.6 hypothetical protein (NCBI ptt file) compare
BT2170 -1.1 -3.1 hypothetical protein (NCBI ptt file) compare
BT3801 -1.1 -2.0 rteB, two-component system response regulator (NCBI ptt file) compare
BT1852 -1.1 -1.8 cysteine synthase A (NCBI ptt file) compare
BT4322 -1.1 -1.7 conserved hypothetical protein, with a diacylglycerol kinase catalytic domain (NCBI ptt file) compare
BT1222 -1.1 -1.4 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT0249 -1.1 -1.5 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase (NCBI ptt file) compare
BT4206 -1.1 -1.2 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NCBI ptt file) compare
BT4764 -1.1 -1.1 hypothetical protein (NCBI ptt file) compare
BT1420 -1.1 -3.0 conserved hypothetical protein (NCBI ptt file) compare
BT0638 -1.1 -4.4 putative methionine aminopeptidase A (NCBI ptt file) compare
BT1343 -1.1 -3.1 putative capsule biosynthesis protein (NCBI ptt file) compare
BT3805 -1.1 -2.5 two-component system sensor histidine kinase (NCBI ptt file) compare
BT4573 -1.1 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT1361 -1.1 -3.7 DNA repair protein recN (Recombination protein N) (NCBI ptt file) compare
BT1081 -1.1 -1.1 recombination protein recR (NCBI ptt file) compare
BT0152 -1.0 -2.9 acetyl esterase (acetylxylosidase) (NCBI ptt file) compare
BT1108 -1.0 -2.1 conserved hypothetical protein, putative integral membrane protein (NCBI ptt file) compare
BT4551 -1.0 -1.7 putative GTPase, ThdF family (NCBI ptt file) compare
BT1363 -1.0 -0.9 DNA Pol III Epsilon Chain (NCBI ptt file) compare
BT1127 -1.0 -1.3 mobilization protein BmgB (NCBI ptt file) compare
BT1064 -1.0 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT1341 -1.0 -2.8 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
BT1330 -1.0 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0185 -1.0 -0.9 conserved hypothetical protein (NCBI ptt file) compare
BT3376 -1.0 -3.8 nucleotide sugar transaminase (NCBI ptt file) compare
BT1352 -1.0 -2.6 putative glycosyltransferase HI1698 (NCBI ptt file) compare
BT1561 -1.0 -0.7 hypothetical protein (NCBI ptt file) compare
BT2932 -1.0 -1.5 transcriptional regulator (NCBI ptt file) compare
BT3639 -1.0 -3.3 ThiF family protein, putative dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis (NCBI ptt file) compare
BT0080 -1.0 -2.0 hypothetical protein (NCBI ptt file) compare
BT1704 -1.0 -0.9 hypothetical protein (NCBI ptt file) compare
BT0603 -1.0 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT3819 -1.0 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT3072 -1.0 -3.9 collagenase precursor (NCBI ptt file) compare
BT1342 -1.0 -3.3 putative UDP-glucuronic acid epimerase (NCBI ptt file) compare
BT0674 -1.0 -1.7 carboxynorspermidine decarboxylase (NCBI ptt file) compare
BT1641 -1.0 -1.2 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT2742 -1.0 -1.3 integrase, site-specific recombinase (NCBI ptt file) compare
BT1346 -1.0 -2.3 capsule biosynthesis protein capA (NCBI ptt file) compare
BT0896 -0.9 -1.2 putative patatin-like phospholipase (NCBI ptt file) compare
BT1584 -0.9 -2.8 hypothetical protein (NCBI ptt file) compare
BT1972 -0.9 -5.9 phosphoenolpyruvate synthase/pyruvate phosphate dikinase (NCBI ptt file) compare
BT0827 -0.9 -1.9 hypothetical protein (NCBI ptt file) compare
BT1419 -0.9 -1.6 hypothetical protein (NCBI ptt file) compare
BT0414 -0.9 -1.6 sulfate adenylyltransferase subunit 2 (NCBI ptt file) compare
BT1811 -0.9 -2.6 hypothetical protein (NCBI ptt file) compare
BT3762 -0.9 -2.2 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT3981 -0.9 -2.1 hypothetical protein (NCBI ptt file) compare
BT0402 -0.9 -1.5 hypothetical protein (NCBI ptt file) compare
BT0193 -0.9 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT1005 -0.9 -1.9 hypothetical protein (NCBI ptt file) compare
BT0602 -0.9 -2.3 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI ptt file) compare
BT1344 -0.9 -2.7 putative glycosyltransferase (NCBI ptt file) compare
BT0932 -0.9 -1.0 hypothetical protein (NCBI ptt file) compare
BT4776 -0.9 -2.0 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1354 -0.9 -2.5 putative flippase (NCBI ptt file) compare
BT0381 -0.9 -2.2 capsular polysaccharide biosynthesis protein capD (NCBI ptt file) compare
BT1126 -0.9 -1.3 mobilization protein BmgA (NCBI ptt file) compare
BT1355 -0.9 -3.3 hypothetical protein (NCBI ptt file) compare
BT3374 -0.9 -4.2 putative carbamoyl-phosphate-synthetase (NCBI ptt file) compare
BT0044 -0.9 -1.5 putative glycosyltransferase (NCBI ptt file) compare
BT3255 -0.9 -2.6 putative N6-adenine-specific DNA methylase (NCBI ptt file) compare
BT0970 -0.9 -2.3 haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT0637 -0.9 -2.2 conserved hypothetical protein (NCBI ptt file) compare
BT0777 -0.8 -1.2 hypothetical protein (NCBI ptt file) compare
BT4590 -0.8 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT0783 -0.8 -1.0 hypothetical protein (NCBI ptt file) compare
p5482_02 -0.8 -2.8 hypothetical protein (NCBI) compare
BT2974 -0.8 -1.2 hypothetical protein (NCBI ptt file) compare
BT1350 -0.8 -2.4 CDP-glucose 4,6-dehydratase (NCBI ptt file) compare
BT3075 -0.8 -4.9 NAD-dependent epimerase/dehydratase family protein (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Bacteroides thetaiotaomicron VPI-5482 in stress experiments

For stress Lincomycin hydrochloride across organisms