Experiment set10IT043 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sucrose (C) and Ammonium chloride (N); with TAPS; with PEG

200 most important genes:

  gene name fitness t score description  
PFLU_RS01625 -4.0 -3.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS29780 -3.9 -9.6 acyl-CoA thioesterase compare
PFLU_RS07755 -3.5 -10.1 heavy metal sensor histidine kinase compare
PFLU_RS09835 -3.5 -16.5 LysR family transcriptional regulator compare
PFLU_RS20540 -3.4 -15.3 phosphoribosylanthranilate isomerase compare
PFLU_RS27370 -3.3 -15.2 anthranilate phosphoribosyltransferase compare
PFLU_RS02590 -3.2 -10.9 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01645 -3.0 -15.7 S41 family peptidase compare
PFLU_RS00175 -3.0 -12.4 tryptophan synthase subunit alpha compare
PFLU_RS04465 -3.0 -11.0 ATP phosphoribosyltransferase compare
PFLU_RS28390 -2.9 -11.7 methionine biosynthesis protein MetW compare
PFLU_RS20565 -2.9 -16.4 3-isopropylmalate dehydrogenase compare
PFLU_RS18410 -2.8 -5.2 response regulator compare
PFLU_RS09055 -2.8 -5.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01620 -2.8 -10.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS25360 -2.8 -9.1 glutamate 5-kinase compare
PFLU_RS20515 -2.8 -5.8 amidophosphoribosyltransferase compare
PFLU_RS27475 -2.8 -9.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS25715 -2.7 -12.0 RNA polymerase-binding protein DksA compare
PFLU_RS20510 -2.7 -14.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS13540 -2.7 -8.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS21495 -2.7 -5.6 TlpA family protein disulfide reductase compare
PFLU_RS27365 -2.7 -9.8 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28645 -2.7 -16.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS09845 -2.7 -3.7 biotin carboxyl carrier domain-containing protein compare
PFLU_RS04470 -2.7 -14.1 histidinol dehydrogenase compare
PFLU_RS20580 -2.6 -12.6 3-isopropylmalate dehydratase large subunit compare
PFLU_RS14670 -2.6 -5.8 GNAT family N-acetyltransferase compare
PFLU_RS10765 -2.6 -11.7 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS00180 -2.6 -10.4 tryptophan synthase subunit beta compare
PFLU_RS05690 -2.6 -3.4 Grx4 family monothiol glutaredoxin compare
PFLU_RS29480 -2.5 -13.8 exodeoxyribonuclease III compare
PFLU_RS24095 -2.5 -4.5 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS23380 -2.5 -4.0 HAD-IB family hydrolase compare
PFLU_RS08155 -2.5 -6.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS25585 -2.5 -4.7 exodeoxyribonuclease V subunit alpha compare
PFLU_RS14805 -2.5 -2.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS09865 -2.4 -13.0 allantoin permease compare
PFLU_RS18530 -2.3 -5.8 DNA translocase FtsK compare
PFLU_RS25760 -2.3 -13.7 glucose-6-phosphate isomerase compare
PFLU_RS01900 -2.3 -8.0 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS14665 -2.3 -8.2 helix-turn-helix transcriptional regulator compare
PFLU_RS25595 -2.3 -3.9 exodeoxyribonuclease V subunit gamma compare
PFLU_RS28695 -2.2 -6.5 phosphoglycerate dehydrogenase compare
PFLU_RS01605 -2.2 -7.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS28535 -2.2 -13.7 dihydroxy-acid dehydratase compare
PFLU_RS24765 -2.2 -14.9 2-isopropylmalate synthase compare
PFLU_RS25640 -2.2 -11.8 ketol-acid reductoisomerase compare
PFLU_RS03970 -2.2 -10.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS20290 -2.2 -2.5 integration host factor subunit alpha compare
PFLU_RS31425 -2.2 -2.7 hypothetical protein compare
PFLU_RS15620 -2.1 -5.4 phenylacetaldoxime dehydratase family protein compare
PFLU_RS14550 -2.1 -9.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS02370 -2.1 -10.4 glycosyltransferase compare
PFLU_RS08675 -2.1 -3.1 DsbE family thiol:disulfide interchange protein compare
PFLU_RS07525 -2.1 -3.3 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS20575 -2.0 -6.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS23510 -2.0 -13.8 5-oxoprolinase subunit PxpA compare
PFLU_RS19015 -2.0 -8.6 anti-sigma factor compare
PFLU_RS07230 -2.0 -9.9 RNA polymerase sigma factor RpoE compare
PFLU_RS28165 -2.0 -10.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS22595 -2.0 -3.6 OmpA family protein compare
PFLU_RS04070 -2.0 -4.6 peptide chain release factor 3 compare
PFLU_RS28385 -1.9 -10.9 homoserine O-acetyltransferase compare
PFLU_RS02275 -1.9 -3.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS24025 -1.9 -10.2 quinolinate synthase NadA compare
PFLU_RS03645 -1.9 -10.2 tetratricopeptide repeat protein compare
PFLU_RS06310 -1.8 -7.3 sigma E protease regulator RseP compare
PFLU_RS02365 -1.8 -10.2 glycosyltransferase compare
PFLU_RS18395 -1.8 -2.6 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS13010 -1.8 -5.4 Fe-S biogenesis protein NfuA compare
PFLU_RS05750 -1.8 -1.7 methionine--tRNA ligase compare
PFLU_RS02490 -1.8 -9.7 phosphoserine phosphatase SerB compare
PFLU_RS04015 -1.8 -2.6 1-phosphofructokinase compare
PFLU_RS08125 -1.8 -3.0 integration host factor subunit beta compare
PFLU_RS02350 -1.7 -7.3 carbamoyltransferase compare
PFLU_RS08135 -1.7 -5.5 glycosyltransferase compare
PFLU_RS30510 -1.7 -6.0 glycosyltransferase family 4 protein compare
PFLU_RS08185 -1.7 -8.7 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS07645 -1.7 -3.9 hypothetical protein compare
PFLU_RS24555 -1.7 -5.3 thioredoxin fold domain-containing protein compare
PFLU_RS21665 -1.7 -7.2 MinD/ParA family protein compare
PFLU_RS01895 -1.6 -5.6 phosphoribosyl-ATP diphosphatase compare
PFLU_RS25815 -1.6 -2.3 transcription termination/antitermination protein NusA compare
PFLU_RS08655 -1.6 -3.7 heme ABC transporter permease compare
PFLU_RS14810 -1.6 -3.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS08660 -1.6 -2.7 heme exporter protein CcmD compare
PFLU_RS08490 -1.6 -1.2 DEAD/DEAH box helicase compare
PFLU_RS04430 -1.6 -8.3 ATP-binding cassette domain-containing protein compare
PFLU_RS09855 -1.6 -5.9 allophanate hydrolase subunit 1 compare
PFLU_RS08190 -1.6 -11.3 polysaccharide biosynthesis protein compare
PFLU_RS07785 -1.6 -9.6 VacJ family lipoprotein compare
PFLU_RS25755 -1.5 -4.2 pantoate--beta-alanine ligase compare
PFLU_RS02355 -1.5 -5.2 GNAT family N-acetyltransferase compare
PFLU_RS08670 -1.5 -4.6 heme lyase CcmF/NrfE family subunit compare
PFLU_RS31275 -1.5 -1.7 hypothetical protein compare
PFLU_RS05020 -1.5 -2.2 DUF1120 domain-containing protein compare
PFLU_RS08145 -1.5 -6.9 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS19910 -1.5 -2.7 hypothetical protein compare
PFLU_RS30505 -1.5 -4.6 hypothetical protein compare
PFLU_RS24330 -1.4 -6.1 phosphogluconate dehydratase compare
PFLU_RS01005 -1.4 -1.3 ABC transporter ATP-binding protein compare
PFLU_RS25645 -1.4 -3.1 acetolactate synthase small subunit compare
PFLU_RS19170 -1.4 -3.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS01835 -1.4 -8.9 glucan biosynthesis protein G compare
PFLU_RS12260 -1.4 -2.6 hypothetical protein compare
PFLU_RS22075 -1.3 -7.6 DUF3108 domain-containing protein compare
PFLU_RS01390 -1.3 -6.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS13665 -1.3 -2.0 MarR family transcriptional regulator compare
PFLU_RS26290 -1.3 -1.2 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS19165 -1.3 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS28965 -1.3 -7.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS18885 -1.3 -1.2 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS13580 -1.3 -3.4 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS02565 -1.3 -5.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS09670 -1.2 -2.0 integrating conjugative element protein compare
PFLU_RS19550 -1.2 -1.3 ABC transporter ATP-binding protein compare
PFLU_RS09840 -1.2 -5.3 5-oxoprolinase subunit PxpA compare
PFLU_RS08370 -1.2 -3.1 hypothetical protein compare
PFLU_RS01840 -1.2 -9.7 glucans biosynthesis glucosyltransferase MdoH compare
PFLU_RS26770 -1.2 -8.1 DedA family protein compare
PFLU_RS28325 -1.2 -6.0 energy transducer TonB compare
PFLU_RS21425 -1.2 -2.9 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS14320 -1.2 -1.7 DUF2946 domain-containing protein compare
PFLU_RS06320 -1.2 -2.3 OmpH family outer membrane protein compare
PFLU_RS07725 -1.2 -3.7 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS00440 -1.2 -8.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS08065 -1.2 -6.8 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS24590 -1.2 -1.9 cytochrome c assembly protein compare
PFLU_RS16435 -1.1 -7.5 glycogen debranching protein GlgX compare
PFLU_RS30525 -1.1 -6.6 SDR family oxidoreductase compare
PFLU_RS30530 -1.1 -5.2 acetyltransferase compare
PFLU_RS08650 -1.1 -1.6 heme exporter protein CcmB compare
PFLU_RS18505 -1.1 -6.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS24720 -1.1 -5.5 trehalose operon repressor compare
PFLU_RS10210 -1.1 -4.7 oligosaccharide flippase family protein compare
PFLU_RS08160 -1.1 -6.1 sugar transferase compare
PFLU_RS31200 -1.1 -4.3 hypothetical protein compare
PFLU_RS21215 -1.1 -1.9 YheU family protein compare
PFLU_RS27690 -1.1 -2.3 response regulator compare
PFLU_RS21060 -1.1 -3.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS28905 -1.1 -6.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS04140 -1.1 -2.6 response regulator transcription factor compare
PFLU_RS22740 -1.1 -3.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS07690 -1.1 -5.0 helix-turn-helix transcriptional regulator compare
PFLU_RS30520 -1.1 -4.6 ketoacyl-ACP synthase III compare
PFLU_RS30165 -1.1 -5.7 ParA family protein compare
PFLU_RS18585 -1.1 -2.3 high frequency lysogenization protein HflD compare
PFLU_RS29505 -1.1 -3.2 DNA-directed RNA polymerase subunit omega compare
PFLU_RS14305 -1.1 -2.6 sensor histidine kinase compare
PFLU_RS01960 -1.1 -1.9 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS12975 -1.1 -3.5 DUF934 domain-containing protein compare
PFLU_RS01965 -1.1 -2.3 ATP-dependent protease subunit HslV compare
PFLU_RS16865 -1.1 -2.6 hypothetical protein compare
PFLU_RS23220 -1.0 -2.2 tRNA-Arg compare
PFLU_RS16120 -1.0 -2.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS22095 -1.0 -8.5 GTP diphosphokinase compare
PFLU_RS28545 -1.0 -5.1 FecR family protein compare
PFLU_RS29095 -1.0 -9.1 polyphosphate kinase 1 compare
PFLU_RS24085 -1.0 -3.4 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS01285 -1.0 -1.9 HAMP domain-containing protein compare
PFLU_RS12980 -1.0 -5.7 nitrite/sulfite reductase compare
PFLU_RS03555 -1.0 -0.8 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS05965 -1.0 -1.6 hypothetical protein compare
PFLU_RS09535 -1.0 -1.0 TIGR03750 family conjugal transfer protein compare
PFLU_RS30160 -1.0 -2.3 ParB/RepB/Spo0J family partition protein compare
PFLU_RS10835 -1.0 -2.2 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS29250 -1.0 -2.1 DUF1289 domain-containing protein compare
PFLU_RS04440 -1.0 -5.8 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS25875 -1.0 -3.5 transcription elongation factor GreA compare
PFLU_RS12445 -1.0 -7.0 TonB-dependent siderophore receptor compare
PFLU_RS22105 -1.0 -3.0 cysteine synthase CysM compare
PFLU_RS24205 -1.0 -1.6 DNA binding protein compare
PFLU_RS00415 -1.0 -1.6 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS12450 -1.0 -6.1 cyclic peptide export ABC transporter compare
PFLU_RS16410 -1.0 -7.7 glycogen synthase GlgA compare
PFLU_RS23585 -1.0 -5.0 GntP family permease compare
PFLU_RS27465 -0.9 -2.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS23065 -0.9 -5.3 phosphate acyltransferase PlsX compare
PFLU_RS08105 -0.9 -4.5 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS04435 -0.9 -4.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS22520 -0.9 -1.9 GntR family transcriptional regulator compare
PFLU_RS05880 -0.9 -3.2 CinA family protein compare
PFLU_RS31635 -0.9 -2.6 IS21 family transposase compare
PFLU_RS27650 -0.9 -6.7 biotin synthase BioB compare
PFLU_RS28655 -0.9 -6.7 HAD family hydrolase compare
PFLU_RS23920 -0.9 -1.8 septation protein A compare
PFLU_RS01910 -0.9 -1.8 sterol-binding protein compare
PFLU_RS16425 -0.9 -6.5 malto-oligosyltrehalose synthase compare
PFLU_RS15410 -0.9 -1.8 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS18595 -0.9 -2.2 cupin domain-containing protein compare
PFLU_RS19900 -0.9 -2.1 general secretion pathway protein GspM compare
PFLU_RS10685 -0.9 -4.2 hydratase compare
PFLU_RS14395 -0.9 -2.4 DUF664 domain-containing protein compare
PFLU_RS21260 -0.9 -4.3 DUF3509 domain-containing protein compare
PFLU_RS28195 -0.8 -6.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS25750 -0.8 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS29515 -0.8 -5.2 RidA family protein compare
PFLU_RS15380 -0.8 -2.2 DUF1652 domain-containing protein compare
PFLU_RS07245 -0.8 -4.8 DegQ family serine endoprotease compare


Specific Phenotypes

For 5 genes in this experiment

For stress Sucrose in Pseudomonas fluorescens SBW25-INTG

For stress Sucrose across organisms