Experiment set10IT043 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Varel_Bryant_medium_Glucose with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM

200 most important genes:

  gene name fitness t score description  
BT1857 -3.9 -2.7 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT3164 -3.7 -8.8 quinolinate synthetase A (NCBI ptt file) compare
BT2401 -3.7 -6.6 threonine synthase (NCBI ptt file) compare
BT3918 -3.5 -4.1 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT2074 -3.5 -6.3 ketol-acid reductoisomerase (NCBI ptt file) compare
BT3184 -3.4 -15.4 L-aspartate oxidase (NCBI ptt file) compare
BT2402 -3.4 -12.9 homoserine phosphotransferase HomK (from data) compare
BT1983 -3.4 -8.2 hemolysin III (NCBI ptt file) compare
BT2078 -3.4 -9.6 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT3395 -3.3 -8.4 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT1377 -3.2 -3.1 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT3761 -3.2 -5.2 N-succinylglutamate synthase (from data) compare
BT3733 -3.2 -11.3 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT0704 -3.2 -2.1 phosphoribosylglycinamide formyltransferase 2 (NCBI ptt file) compare
BT2403 -3.1 -9.2 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT0532 -3.0 -4.6 anthranilate synthase component I (NCBI ptt file) compare
BT3933 -2.9 -4.0 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT1860 -2.9 -5.1 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT0528 -2.8 -3.3 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT1861 -2.8 -7.0 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT3759 -2.8 -10.0 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT0700 -2.8 -2.7 GTP pyrophosphokinase (NCBI ptt file) compare
BT0530 -2.8 -2.7 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT3719 -2.7 -5.0 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT3760 -2.7 -4.4 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT1375 -2.7 -13.0 aspartokinase (NCBI ptt file) compare
BT2415 -2.7 -11.3 aspartate aminotransferase (NCBI ptt file) compare
BT2837 -2.6 -13.4 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT0202 -2.6 -3.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT1374 -2.6 -4.6 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT1419 -2.6 -2.4 hypothetical protein (NCBI ptt file) compare
BT3320 -2.6 -8.0 dihydrodipicolinate reductase (NCBI ptt file) compare
BT1858 -2.6 -5.1 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT3757 -2.5 -7.5 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT3253 -2.5 -1.7 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT3549 -2.5 -7.1 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT0891 -2.5 -1.7 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT2417 -2.4 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT3361 -2.4 -5.6 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT3193 -2.4 -12.9 putative coenzyme A transferase (NCBI ptt file) compare
BT2836 -2.4 -14.1 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT1379 -2.4 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT3718 -2.4 -9.5 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT0738 -2.4 -2.3 serine hydroxymethyltransferase (NCBI ptt file) compare
BT0876 -2.3 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT1843 -2.3 -4.7 adenylosuccinate synthetase (NCBI ptt file) compare
BT1153 -2.3 -4.6 phosphoserine aminotransferase (NCBI ptt file) compare
BT1443 -2.3 -3.5 8-amino-7-oxononanoate synthase (NCBI ptt file) compare
BT0527 -2.3 -2.7 tryptophan synthase alpha chain (NCBI ptt file) compare
BT3758 -2.3 -4.5 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT2077 -2.3 -4.3 acetolactate synthase large subunit (NCBI ptt file) compare
BT2843 -2.3 -4.2 integrase (NCBI ptt file) compare
BT0892 -2.3 -2.1 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT4328 -2.2 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT0200 -2.2 -3.0 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT1444 -2.2 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT3717 -2.2 -4.6 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT1844 -2.2 -3.6 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT0531 -2.2 -2.5 anthranilate synthase component II (NCBI ptt file) compare
BT1270 -2.2 -3.3 putative Na+/H+ antiporter (NCBI ptt file) compare
BT1442 -2.2 -4.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file) compare
BT3197 -2.2 -1.4 hypothetical protein (NCBI ptt file) compare
BT2076 -2.1 -6.6 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT1476 -2.1 -3.1 aspartate aminotransferase (NCBI ptt file) compare
BT1733 -2.1 -2.8 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT0519 -2.1 -4.4 hypothetical protein (NCBI ptt file) compare
BT3035 -2.0 -10.7 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT1446 -2.0 -6.2 dethiobiotin synthetase (NCBI ptt file) compare
BT1859 -2.0 -3.2 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT3074 -1.9 -3.2 conserved hypothetical protein (NCBI ptt file) compare
BT1445 -1.9 -2.8 putative biotin synthesis protein bioC (NCBI ptt file) compare
BT1421 -1.9 -3.7 hypothetical protein (NCBI ptt file) compare
BT4211 -1.9 -1.3 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT3912 -1.8 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0095 -1.8 -3.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT3372 -1.8 -3.6 glycosyltransferase (NCBI ptt file) compare
BT3325 -1.8 -6.5 hypothetical protein (NCBI ptt file) compare
BT3373 -1.7 -3.5 spermidine n1-acetyltransferase (NCBI ptt file) compare
BT0249 -1.7 -1.9 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase (NCBI ptt file) compare
BT0201 -1.7 -3.5 histidinol dehydrogenase (NCBI ptt file) compare
BT3371 -1.7 -2.7 putative glycosyltransferase yibD (NCBI ptt file) compare
BT1381 -1.7 -4.2 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT4551 -1.7 -1.1 putative GTPase, ThdF family (NCBI ptt file) compare
BT3999 -1.6 -6.9 membrane-bound lytic murein transglycosylase D presursor (NCBI ptt file) compare
BT1378 -1.6 -2.4 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT0880 -1.6 -1.8 hypothetical protein (NCBI ptt file) compare
BT3223 -1.6 -2.1 hypothetical protein (NCBI ptt file) compare
BT3394 -1.6 -7.0 putative arginine decarboxylase (NCBI ptt file) compare
BT3224 -1.6 -2.8 putative lysine decarboxylase (NCBI ptt file) compare
BT4562 -1.6 -1.0 hypothetical protein (NCBI ptt file) compare
BT1970 -1.6 -7.3 glutamate dehydrogenase (NCBI ptt file) compare
BT1905 -1.5 -3.1 conserved hypothetical protein (NCBI ptt file) compare
BT3936 -1.5 -1.4 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT4644 -1.5 -2.7 putative anti-sigma factor (NCBI ptt file) compare
BT1894 -1.5 -4.4 TPR-repeat-containing proteins (NCBI ptt file) compare
BT1152 -1.5 -1.0 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT1607 -1.5 -2.7 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT4382 -1.5 -2.8 hypothetical protein (NCBI ptt file) compare
BT1221 -1.5 -3.2 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT0203 -1.5 -1.0 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT2173 -1.4 -5.7 hypothetical protein (NCBI ptt file) compare
BT2938 -1.4 -4.8 putative glycosyltransferase (NCBI ptt file) compare
BT3220 -1.4 -7.4 TPR-repeat-containing protein (NCBI ptt file) compare
BT1220 -1.4 -2.0 6-phosphogluconolactonase (NCBI ptt file) compare
BT4557 -1.4 -5.6 hypothetical protein (NCBI ptt file) compare
BT3724 -1.4 -1.8 cationic outer membrane protein precursor (NCBI ptt file) compare
BT3712 -1.4 -2.0 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) compare
BT4666 -1.4 -1.9 putative K+ uptake system protein (NCBI ptt file) compare
BT4674 -1.4 -2.7 hypothetical protein (NCBI ptt file) compare
BT2172 -1.3 -7.2 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT_t17 pseudo-tRNA -1.3 -2.2 tRNA-OTHER (RefSeq) compare
BT0679 -1.3 -1.7 cation efflux system protein czcB (NCBI ptt file) compare
BT4699 -1.3 -2.2 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT0398 -1.3 -2.3 polysaccharide export outer membrane protein (NCBI ptt file) compare
BT3376 -1.3 -4.3 nucleotide sugar transaminase (NCBI ptt file) compare
BT0875 -1.3 -3.0 beta-ureidopropionase (NCBI ptt file) compare
BT0758 -1.3 -1.7 acetyltransferase (NCBI ptt file) compare
BT0481 -1.3 -1.9 polysaccharide export outer membrane protein (NCBI ptt file) compare
BT0692 -1.3 -1.6 putative calcineurin superfamily phosphohydrolase (NCBI ptt file) compare
BT1420 -1.3 -3.2 conserved hypothetical protein (NCBI ptt file) compare
BT1347 -1.2 -3.1 conserved hypothetical protein (NCBI ptt file) compare
BT4571 -1.2 -1.6 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT4339 -1.2 -1.6 glutamine synthetase (NCBI ptt file) compare
BT3554 -1.2 -3.0 conserved hypothetical protein (NCBI ptt file) compare
p5482_02 -1.2 -3.8 hypothetical protein (NCBI) compare
BT2418 -1.2 -3.0 hypothetical protein (NCBI ptt file) compare
BT0533 -1.2 -1.6 tryptophan synthase beta chain (NCBI ptt file) compare
BT1361 -1.2 -4.2 DNA repair protein recN (Recombination protein N) (NCBI ptt file) compare
BT0100 -1.2 -1.2 hypothetical protein (NCBI ptt file) compare
BT2781 -1.2 -2.9 putative mannose-1-phosphate guanylyltransferase (NCBI ptt file) compare
BT0039 -1.2 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT3973 -1.2 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) compare
BT0638 -1.2 -4.0 putative methionine aminopeptidase A (NCBI ptt file) compare
BT0134 -1.2 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT0771 -1.2 -3.1 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT2280 -1.2 -1.7 hypothetical protein (NCBI ptt file) compare
BT2080 -1.2 -3.0 L-cysteine desulfidase cdsB (from data) compare
BT3819 -1.2 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT3920 -1.2 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1984 -1.2 -2.2 transcriptional regulator (NCBI ptt file) compare
BT3979 -1.2 -2.1 putative methyltransferase (NCBI ptt file) compare
BT3935 -1.2 -2.7 aminotransferase (NCBI ptt file) compare
BT1559 -1.1 -3.1 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT2944 -1.1 -4.2 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT1981 -1.1 -2.6 hypothetical protein (NCBI ptt file) compare
BT2129 -1.1 -4.3 aspartate--ammonia ligase (NCBI ptt file) compare
BT4501 -1.1 -2.4 ribosomal large subunit pseudouridine synthase A (NCBI ptt file) compare
BT1351 -1.1 -1.6 glucose-1-phosphate cytidylyltransferase (NCBI ptt file) compare
BT1137 -1.1 -1.2 hypothetical protein (NCBI ptt file) compare
BT1108 -1.1 -2.1 conserved hypothetical protein, putative integral membrane protein (NCBI ptt file) compare
BT0814 -1.1 -1.2 conserved hypothetical protein, putative outer membrane protein (NCBI ptt file) compare
BT1516 -1.1 -1.7 replicative DNA helicase (NCBI ptt file) compare
BT0749 -1.1 -3.1 putative two-component system sensor histidine kinase (NCBI ptt file) compare
BT0882 -1.1 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT0703 -1.1 -2.5 hypothetical protein (NCBI ptt file) compare
BT0690 -1.1 -2.9 two-component system response regulator (NCBI ptt file) compare
BT0395 -1.1 -1.7 hypothetical protein (NCBI ptt file) compare
BT0529 -1.1 -1.0 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT1804 -1.1 -2.5 electron transfer flavoprotein beta-subunit (NCBI ptt file) compare
BT1342 -1.1 -3.9 putative UDP-glucuronic acid epimerase (NCBI ptt file) compare
BT3211 -1.1 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT1055 -1.1 -1.6 pyruvate formate-lyase activating enzyme (NCBI ptt file) compare
BT0375 -1.1 -2.4 integrase (NCBI ptt file) compare
BT4601 -1.0 -2.2 hypothetical protein (NCBI ptt file) compare
BT1313 -1.0 -1.3 muconate cycloisomerase (NCBI ptt file) compare
BT4191 -1.0 -5.8 hypothetical protein (NCBI ptt file) compare
BT1808 -1.0 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT4590 -1.0 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT1355 -1.0 -4.4 hypothetical protein (NCBI ptt file) compare
BT1564 -1.0 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT0392 -1.0 -1.8 lipopolysaccharide biosynthesis RfbU-related protein (NCBI ptt file) compare
BT0472 -1.0 -1.7 putative acyltransferase in colanic acid biosynthesis (NCBI ptt file) compare
BT0991 -1.0 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT4618 -1.0 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT2258 -1.0 -3.2 GTP-binding protein (NCBI ptt file) compare
BT3268 -1.0 -1.6 glucose-inhibited division protein A (NCBI ptt file) compare
BT3801 -1.0 -1.9 rteB, two-component system response regulator (NCBI ptt file) compare
BT1103 -1.0 -1.1 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT4042 -1.0 -6.1 putative Mg2+ transporter MgtE (NCBI ptt file) compare
BT4018 -1.0 -1.6 hypothetical protein (NCBI ptt file) compare
BT1071 -1.0 -1.9 hypothetical protein (NCBI ptt file) compare
BT3075 -1.0 -5.9 NAD-dependent epimerase/dehydratase family protein (NCBI ptt file) compare
BT1667 -1.0 -1.0 hypothetical protein (NCBI ptt file) compare
BT1336 -1.0 -2.6 putative translation initiation inhibitor (NCBI ptt file) compare
BT0055 -1.0 -2.2 putative glycosyltransferase (NCBI ptt file) compare
BT0955 -1.0 -2.3 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT1704 -1.0 -0.9 hypothetical protein (NCBI ptt file) compare
BT0936 -1.0 -1.2 hypothetical protein (NCBI ptt file) compare
BT1076 -0.9 -2.6 two-component system response regulator (NCBI ptt file) compare
BT1080 -0.9 -1.5 hypothetical protein (NCBI ptt file) compare
BT0641 -0.9 -1.6 hypothetical protein (NCBI ptt file) compare
BT1539 -0.9 -2.1 cytidine deaminase (NCBI ptt file) compare
BT1292 -0.9 -3.3 thiol:disulfide interchange protein (NCBI ptt file) compare
BT1346 -0.9 -2.4 capsule biosynthesis protein capA (NCBI ptt file) compare
BT1752 -0.9 -1.0 hypothetical protein (NCBI ptt file) compare
BT1979 -0.9 -2.0 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT1341 -0.9 -2.7 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
BT2003 -0.9 -1.0 putative membrane peptidase (NCBI ptt file) compare
BT1345 -0.9 -1.8 glycosyltransferase (NCBI ptt file) compare
BT0548 -0.9 -1.6 diaminopimelate epimerase (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Bacteroides thetaiotaomicron VPI-5482 in stress experiments

For stress Vancomycin Hydrochloride from Streptomyces orientalis across organisms