Experiment set10IT039 for Bifidobacterium breve UCC2003

Compare to:

diet=StandardDiet; sample=FecalPellet; mouse1; day4

200 most important genes:

  gene name fitness t score description  
BBR_RS21165 -7.3 -3.3 hypothetical protein compare
BBR_RS20180 -6.4 -10.7 carbohydrate ABC transporter permease compare
BBR_RS18595 -6.3 -4.4 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
BBR_RS20200 -6.3 -4.4 alpha-galactosidase compare
BBR_RS12910 -6.2 -4.3 galactokinase compare
BBR_RS20245 -6.2 -30.0 cation-translocating P-type ATPase compare
BBR_RS20195 -6.1 -14.2 ROK family transcriptional regulator compare
BBR_RS11410 -6.1 -13.6 iron permease compare
BBR_RS19200 -6.0 -10.9 hypothetical protein compare
BBR_RS19395 -6.0 -2.7 hypothetical protein compare
BBR_RS11135 -5.9 -12.0 dihydrodipicolinate synthase family protein compare
BBR_RS10980 -5.9 -9.9 TetR/AcrR family transcriptional regulator compare
BBR_RS13705 -5.9 -4.1 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS19205 -5.8 -25.2 Evolved beta-galactosidase subunit alpha compare
BBR_RS20190 -5.8 -15.1 Raffinose-binding protein compare
BBR_RS20185 -5.8 -15.8 sugar ABC transporter permease compare
BBR_RS11415 -5.7 -10.9 amino acid ABC transporter substrate-binding protein compare
BBR_RS16300 -5.6 -3.9 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS12895 -5.5 -7.6 quinone-dependent dihydroorotate dehydrogenase compare
BBR_RS11540 -5.5 -3.2 DUF1727 domain-containing protein compare
BBR_RS12045 -5.4 -3.8 hypothetical protein compare
BBR_RS15050 -5.4 -2.8 DUF948 domain-containing protein compare
BBR_RS17500 -5.4 -5.2 hypothetical protein compare
BBR_RS10255 -5.3 -3.1 chromosomal replication initiator protein DnaA compare
BBR_RS16540 -5.3 -3.7 XRE family transcriptional regulator compare
BBR_RS12900 -5.3 -2.8 DeoR/GlpR transcriptional regulator compare
BBR_RS13805 -5.2 -2.3 hypothetical protein compare
BBR_RS17455 -5.1 -3.6 DNA-binding response regulator compare
BBR_RS17510 -5.1 -5.0 VWA domain-containing protein compare
BBR_RS10285 -5.1 -2.3 membrane protein compare
BBR_RS18735 -5.1 -10.8 hypothetical protein compare
BBR_RS14220 -5.0 -4.9 phosphomannomutase compare
BBR_RS17775 -4.9 -3.4 LacI family DNA-binding transcriptional regulator compare
BBR_RS13380 -4.9 -3.4 amidophosphoribosyltransferase compare
BBR_RS12555 -4.9 -7.5 protein-tyrosine-phosphatase compare
BBR_RS19240 -4.9 -16.7 LacI family transcriptional regulator compare
BBR_RS12510 -4.9 -20.3 beta-galactosidase compare
BBR_RS20175 -4.9 -22.3 LacI family transcriptional regulator compare
BBR_RS18955 -4.8 -13.8 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS17515 -4.8 -6.6 hypothetical protein compare
BBR_RS21015 -4.8 -1.8 hypothetical protein compare
BBR_RS17490 -4.7 -9.6 MoxR family ATPase compare
BBR_RS13750 -4.7 -2.4 DivIVA domain-containing protein compare
BBR_RS17495 -4.7 -7.2 DUF58 domain-containing protein compare
BBR_RS14660 -4.7 -2.5 transcriptional regulator compare
BBR_RS11510 -4.6 -1.7 signal recognition particle-docking protein FtsY compare
BBR_RS10620 -4.6 -3.2 phosphoprotein phosphatase compare
BBR_RS10720 -4.6 -14.3 PDZ domain-containing protein compare
BBR_RS18755 -4.5 -2.0 30S ribosome-binding factor RbfA compare
BBR_RS21170 -4.5 -7.7 membrane protein insertion efficiency factor YidD compare
BBR_RS16820 -4.5 -3.1 RNA polymerase sigma factor RpoE compare
BBR_RS10890 -4.5 -17.3 LacI family transcriptional regulator compare
BBR_RS11720 -4.5 -3.1 DUF2469 domain-containing protein compare
BBR_RS19155 -4.4 -7.4 phosphate ABC transporter, permease protein PstA compare
BBR_RS13375 -4.4 -3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS16940 -4.4 -3.7 hypothetical protein compare
BBR_RS19465 -4.4 -3.2 ribonuclease E/G compare
BBR_RS16520 -4.3 -9.6 ribosome-associated translation inhibitor RaiA compare
BBR_RS16810 -4.2 -13.6 aldose 1-epimerase compare
BBR_RS17505 -4.2 -8.9 VWA domain-containing protein compare
BBR_RS13445 -4.2 -2.9 phosphoribosylformylglycinamidine synthase compare
BBR_RS12235 -4.1 -1.1 hypothetical protein compare
BBR_RS14190 -4.1 -10.6 transcriptional regulator compare
BBR_RS13070 -4.0 -1.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS12590 -4.0 -2.6 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS20415 -4.0 -18.0 G5 domain-containing protein compare
BBR_RS16020 -4.0 -2.1 hypothetical protein compare
BBR_RS13820 -3.9 -1.1 ATP-binding protein compare
BBR_RS12295 -3.9 -1.0 RNA-binding protein compare
BBR_RS12370 -3.9 -1.0 cell division protein compare
BBR_RS12620 -3.9 -13.0 glycosyltransferase family 1 protein compare
BBR_RS12245 -3.9 -1.5 polyribonucleotide nucleotidyltransferase compare
BBR_RS19010 -3.9 -19.6 glycoside hydrolase family 1 protein compare
BBR_RS18215 -3.9 -9.0 AI-2E family transporter compare
BBR_RS16905 -3.9 -2.7 hypothetical protein compare
BBR_RS19795 -3.8 -20.4 hypothetical protein compare
BBR_RS12605 -3.8 -2.6 glycosyltransferase family 2 protein compare
BBR_RS15070 -3.8 -2.6 endolytic transglycosylase MltG compare
BBR_RS19450 -3.8 -1.7 GTPase ObgE compare
BBR_RS12880 -3.8 -9.3 Crp/Fnr family transcriptional regulator compare
BBR_RS10755 -3.8 -2.6 adenylosuccinate synthase compare
BBR_RS13450 -3.7 -2.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS15055 -3.7 -2.3 hypothetical protein compare
BBR_RS20465 -3.7 -2.6 chromosome partitioning protein compare
BBR_RS11590 -3.7 -1.0 30S ribosomal protein S18 compare
BBR_RS19755 -3.6 -7.8 glycosyl transferase compare
BBR_RS10580 -3.6 -3.0 septation inhibitor protein compare
BBR_RS16220 -3.6 -1.0 DNA cytosine methyltransferase compare
BBR_RS18745 -3.6 -1.4 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS19740 -3.6 -17.7 DUF2142 domain-containing protein compare
BBR_RS20850 -3.6 -1.0 resolvase compare
BBR_RS12820 -3.5 -10.9 hypothetical protein compare
BBR_RS10990 -3.5 -8.8 recombination protein RecR compare
BBR_RS18635 -3.5 -5.9 PspC domain-containing protein compare
BBR_RS17435 -3.5 -9.6 universal stress protein compare
BBR_RS18565 -3.5 -1.6 CHAP domain-containing protein compare
BBR_RS13515 -3.5 -9.4 putative sulfate exporter family transporter compare
BBR_RS19220 -3.5 -20.2 glycoside hydrolase family 65 protein compare
BBR_RS18180 -3.5 -7.8 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS19905 -3.4 -0.9 methionine--tRNA ligase compare
BBR_RS16675 -3.4 -2.3 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS14215 -3.4 -2.3 peptidase compare
BBR_RS19125 -3.4 -2.3 hypothetical protein compare
BBR_RS17640 -3.4 -2.2 DNA-directed RNA polymerase subunit omega compare
BBR_RS12550 -3.4 -12.5 sugar transferase compare
BBR_RS15080 -3.4 -2.3 chorismate synthase compare
BBR_RS10905 -3.4 -4.4 nucleotide exchange factor GrpE compare
BBR_RS10565 -3.3 -22.4 glycogen/starch/alpha-glucan family phosphorylase compare
BBR_RS19095 -3.3 -15.7 magnesium transporter compare
BBR_RS10615 -3.3 -3.5 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS14230 -3.3 -2.3 HAMP domain-containing histidine kinase compare
BBR_RS10660 -3.3 -14.7 esterase compare
BBR_RS15695 -3.2 -6.5 membrane channel protein compare
BBR_RS19760 -3.2 -1.7 polysaccharide ABC transporter ATPase compare
BBR_RS14765 -3.2 -1.2 hypothetical protein compare
BBR_RS10265 -3.2 -12.1 DNA replication and repair protein RecF compare
BBR_RS19190 -3.2 -2.2 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS15520 -3.2 -2.2 shikimate 5-dehydrogenase compare
BBR_RS13770 -3.1 -2.2 DNA repair protein RecO compare
BBR_RS12545 -3.1 -2.2 DUF4012 domain-containing protein compare
BBR_RS20460 -3.1 -2.2 chromosome partitioning protein ParB compare
BBR_RS16555 -3.1 -0.8 DNA translocase FtsK compare
BBR_RS16650 -3.1 -9.4 ABC transporter substrate-binding protein compare
BBR_RS20885 -3.1 -0.8 hypothetical protein compare
BBR_RS19640 -3.1 -0.8 phosphoesterase compare
BBR_RS19945 -3.1 -7.2 MarR family transcriptional regulator compare
BBR_RS16955 -3.1 -2.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS19160 -3.0 -1.1 phosphate ABC transporter permease subunit PstC compare
BBR_RS16490 -3.0 -2.1 polyprenyl synthase compare
BBR_RS16750 -3.0 -2.1 ParA family protein compare
BBR_RS11715 -3.0 -14.2 N-acetyltransferase compare
BBR_RS20440 -3.0 -6.0 NUDIX hydrolase compare
BBR_RS18050 -3.0 -2.8 threonylcarbamoyl-AMP synthase compare
BBR_RS12375 -2.9 -1.3 pantetheine-phosphate adenylyltransferase compare
BBR_RS17290 -2.9 -2.8 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS14260 -2.9 -1.1 ABC transporter ATP-binding protein compare
BBR_RS17900 -2.9 -9.3 glutamate--cysteine ligase compare
BBR_RS14140 -2.9 -1.7 Ppx/GppA family phosphatase compare
BBR_RS20085 -2.9 -11.2 histidine phosphatase family protein compare
BBR_RS19260 -2.9 -14.4 hypothetical protein compare
BBR_RS14075 -2.9 -7.6 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS14370 -2.9 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS10625 -2.9 -2.4 FHA domain-containing protein compare
BBR_RS15085 -2.9 -1.3 3-dehydroquinate synthase compare
BBR_RS10780 -2.9 -15.5 sucrose phosphorylase compare
BBR_RS20720 -2.8 -4.8 DUF4422 domain-containing protein compare
BBR_RS16425 -2.8 -1.9 DUF3071 domain-containing protein compare
BBR_RS12975 -2.8 -11.7 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS13455 -2.8 -1.9 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS12940 -2.8 -6.7 hypothetical protein compare
BBR_RS12830 -2.8 -8.5 G5 domain-containing protein compare
BBR_RS16755 -2.7 -6.1 site-specific tyrosine recombinase XerD compare
BBR_RS13720 -2.7 -6.8 hypothetical protein compare
BBR_RS14550 -2.7 -5.5 hypothetical protein compare
BBR_RS11805 -2.7 -5.4 hypothetical protein compare
BBR_RS16430 -2.7 -1.8 nucleotide pyrophosphatase compare
BBR_RS20435 -2.7 -0.7 CCA tRNA nucleotidyltransferase compare
BBR_RS15460 -2.6 -3.1 hypothetical protein compare
BBR_RS19825 -2.6 -11.8 HD domain-containing protein compare
BBR_RS16985 -2.6 -2.6 transcriptional repressor LexA compare
BBR_RS17465 -2.6 -4.1 WXG100 family type VII secretion target compare
BBR_RS12980 -2.6 -11.4 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS17850 -2.6 -10.8 LacI family DNA-binding transcriptional regulator compare
BBR_RS15090 -2.6 -1.0 type II 3-dehydroquinate dehydratase compare
BBR_RS16635 -2.6 -1.7 ABC transporter ATP-binding protein compare
BBR_RS19070 -2.5 -1.0 50S ribosomal protein L33 compare
BBR_RS18185 -2.5 -4.6 hypoxanthine phosphoribosyltransferase compare
BBR_RS10555 -2.5 -1.6 DUF3073 domain-containing protein compare
BBR_RS15445 -2.5 -1.7 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS15655 -2.5 -3.8 Holliday junction branch migration protein RuvA compare
BBR_RS20475 -2.5 -13.0 KH domain-containing protein compare
BBR_RS16530 -2.5 -5.1 recombinase RecA compare
BBR_RS13370 -2.5 -1.7 phosphoribosylamine--glycine ligase compare
BBR_RS16240 -2.5 -4.2 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS20170 -2.4 -11.9 LacI family transcriptional regulator compare
BBR_RS15935 -2.4 -4.4 hypothetical protein compare
BBR_RS12305 -2.4 -5.6 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS16640 -2.4 -2.1 ABC transporter permease compare
BBR_RS19165 -2.3 -2.1 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS11770 -2.3 -4.2 chorismate mutase compare
BBR_RS18795 -2.3 -2.2 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS18690 -2.3 -6.2 diacylglycerol kinase compare
BBR_RS11180 -2.2 -10.7 phosphatase PAP2 family protein compare
BBR_RS20455 -2.2 -4.3 thioredoxin-disulfide reductase compare
BBR_RS15805 -2.2 -4.7 prolipoprotein diacylglyceryl transferase compare
BBR_RS12310 -2.1 -1.3 signal recognition particle protein compare
BBR_RS15845 -2.1 -0.8 hypothetical protein compare
BBR_RS13305 -2.1 -4.0 transcriptional repressor compare
BBR_RS19655 -2.1 -9.6 hypothetical protein compare
BBR_RS19645 -2.0 -6.6 RNA degradosome polyphosphate kinase compare
BBR_RS12610 -2.0 -3.1 capsular polysaccharide biosynthesis protein compare
BBR_RS12840 -2.0 -7.0 DUF4916 domain-containing protein compare
BBR_RS13125 -2.0 -0.7 ABC transporter permease compare
BBR_RS10460 -2.0 -8.7 peroxiredoxin compare
BBR_RS12450 -2.0 -1.6 signal peptidase I compare
BBR_RS15915 -2.0 -0.7 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS13905 -2.0 -3.7 ornithine carbamoyltransferase compare
BBR_RS15440 -1.9 -1.3 orotidine-5'-phosphate decarboxylase compare
BBR_RS20955 -1.9 -1.2 hypothetical protein compare
BBR_RS16515 -1.9 -2.3 preprotein translocase subunit SecA compare


Specific Phenotypes

For 4 genes in this experiment

For mouse diet=StandardDiet; sample=FecalPellet in Bifidobacterium breve UCC2003

For mouse diet=StandardDiet; sample=FecalPellet across organisms