Experiment set10IT034 for Bifidobacterium breve UCC2003

Compare to:

diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3

200 most important genes:

  gene name fitness t score description  
BBR_RS15130 -5.3 -2.0 metal-sulfur cluster assembly factor compare
BBR_RS17970 -5.1 -3.5 gfo/Idh/MocA family oxidoreductase compare
BBR_RS12555 -5.0 -3.4 protein-tyrosine-phosphatase compare
BBR_RS20185 -4.9 -11.8 sugar ABC transporter permease compare
BBR_RS15050 -4.7 -2.1 DUF948 domain-containing protein compare
BBR_RS12910 -4.7 -11.8 galactokinase compare
BBR_RS16885 -4.6 -8.4 carbohydrate kinase compare
BBR_RS21000 -4.6 -2.1 hypothetical protein compare
BBR_RS14275 -4.6 -1.0 30S ribosomal protein S1 compare
BBR_RS20245 -4.4 -29.7 cation-translocating P-type ATPase compare
BBR_RS20555 -4.4 -2.0 hypothetical protein compare
BBR_RS15350 -4.4 -2.2 plasmid pRiA4b ORF-3 family protein compare
BBR_RS12820 -4.4 -8.9 hypothetical protein compare
BBR_RS11135 -4.4 -13.2 dihydrodipicolinate synthase family protein compare
BBR_RS14585 -4.3 -1.7 hypothetical protein compare
BBR_RS11540 -4.3 -2.1 DUF1727 domain-containing protein compare
BBR_RS13805 -4.3 -1.6 hypothetical protein compare
BBR_RS20200 -4.3 -19.7 alpha-galactosidase compare
BBR_RS12900 -4.3 -1.9 DeoR/GlpR transcriptional regulator compare
BBR_RS11510 -4.2 -1.4 signal recognition particle-docking protein FtsY compare
BBR_RS14715 -4.2 -1.4 XRE family transcriptional regulator compare
BBR_RS18595 -4.2 -15.1 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
BBR_RS17500 -4.2 -5.0 hypothetical protein compare
BBR_RS12300 -4.2 -3.0 30S ribosomal protein S16 compare
BBR_RS20825 -4.2 -1.3 hypothetical protein compare
BBR_RS20190 -4.2 -15.3 Raffinose-binding protein compare
BBR_RS13705 -4.2 -6.4 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS11245 -4.1 -17.2 MFS transporter compare
BBR_RS15395 -4.0 -6.8 tRNA (adenine-N1)-methyltransferase compare
BBR_RS10580 -4.0 -1.7 septation inhibitor protein compare
BBR_RS20195 -4.0 -17.8 ROK family transcriptional regulator compare
BBR_RS13820 -3.9 -0.9 ATP-binding protein compare
BBR_RS12235 -3.9 -0.9 hypothetical protein compare
BBR_RS20980 -3.8 -1.2 hypothetical protein compare
BBR_RS20930 -3.8 -1.4 hypothetical protein compare
BBR_RS16610 -3.8 -2.6 hypothetical protein compare
BBR_RS14220 -3.8 -5.8 phosphomannomutase compare
BBR_RS16250 -3.8 -2.5 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS17455 -3.8 -5.8 DNA-binding response regulator compare
BBR_RS18735 -3.7 -10.3 hypothetical protein compare
BBR_RS10285 -3.7 -1.4 membrane protein compare
BBR_RS16685 -3.7 -1.2 alcohol dehydrogenase compare
BBR_RS20690 -3.7 -1.7 hypothetical protein compare
BBR_RS12045 -3.7 -4.4 hypothetical protein compare
BBR_RS12295 -3.7 -0.8 RNA-binding protein compare
BBR_RS12620 -3.7 -12.2 glycosyltransferase family 1 protein compare
BBR_RS12500 -3.6 -0.8 sugar ABC transporter permease compare
BBR_RS10555 -3.6 -1.1 DUF3073 domain-containing protein compare
BBR_RS13830 -3.6 -0.8 DUF4191 domain-containing protein compare
BBR_RS12245 -3.6 -1.2 polyribonucleotide nucleotidyltransferase compare
BBR_RS10720 -3.6 -8.3 PDZ domain-containing protein compare
BBR_RS17510 -3.6 -6.9 VWA domain-containing protein compare
BBR_RS17155 -3.6 -0.8 cell division protein SepF compare
BBR_RS16515 -3.5 -3.6 preprotein translocase subunit SecA compare
BBR_RS12995 -3.5 -6.7 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS16820 -3.5 -2.0 RNA polymerase sigma factor RpoE compare
BBR_RS20180 -3.4 -12.8 carbohydrate ABC transporter permease compare
BBR_RS10570 -3.4 -2.4 hypothetical protein compare
BBR_RS16950 -3.4 -1.1 hypothetical protein compare
BBR_RS20775 -3.4 -1.3 DUF4230 domain-containing protein compare
BBR_RS19795 -3.4 -17.4 hypothetical protein compare
BBR_RS19270 -3.4 -0.8 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS17495 -3.4 -7.9 DUF58 domain-containing protein compare
BBR_RS20955 -3.4 -1.1 hypothetical protein compare
BBR_RS16220 -3.3 -0.8 DNA cytosine methyltransferase compare
BBR_RS17505 -3.3 -7.8 VWA domain-containing protein compare
BBR_RS18745 -3.3 -1.1 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS11590 -3.3 -0.7 30S ribosomal protein S18 compare
BBR_RS19740 -3.3 -13.1 DUF2142 domain-containing protein compare
BBR_RS10780 -3.3 -14.6 sucrose phosphorylase compare
BBR_RS13380 -3.3 -6.3 amidophosphoribosyltransferase compare
BBR_RS10620 -3.2 -2.2 phosphoprotein phosphatase compare
BBR_RS14080 -3.2 -1.5 hypothetical protein compare
BBR_RS15505 -3.2 -7.4 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS17490 -3.2 -11.1 MoxR family ATPase compare
BBR_RS16300 -3.2 -4.4 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS19465 -3.1 -3.3 ribonuclease E/G compare
BBR_RS10255 -3.0 -2.0 chromosomal replication initiator protein DnaA compare
BBR_RS16975 -3.0 -2.1 transcriptional repressor NrdR compare
BBR_RS20480 -3.0 -0.7 membrane protein compare
BBR_RS10615 -3.0 -2.5 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS10890 -3.0 -11.8 LacI family transcriptional regulator compare
BBR_RS15070 -3.0 -2.1 endolytic transglycosylase MltG compare
BBR_RS15055 -3.0 -1.6 hypothetical protein compare
BBR_RS14260 -3.0 -0.9 ABC transporter ATP-binding protein compare
BBR_RS17880 -3.0 -1.7 nucleotidyltransferase compare
BBR_RS18215 -2.9 -7.4 AI-2E family transporter compare
BBR_RS12590 -2.9 -1.6 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS19905 -2.9 -0.7 methionine--tRNA ligase compare
BBR_RS19800 -2.9 -12.1 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS16020 -2.9 -1.3 hypothetical protein compare
BBR_RS17440 -2.9 -0.9 DUF3027 domain-containing protein compare
BBR_RS21170 -2.9 -6.5 membrane protein insertion efficiency factor YidD compare
BBR_RS12550 -2.9 -8.6 sugar transferase compare
BBR_RS12840 -2.8 -7.7 DUF4916 domain-containing protein compare
BBR_RS14130 -2.8 -0.9 septum formation initiator family protein compare
BBR_RS16905 -2.8 -1.9 hypothetical protein compare
BBR_RS20705 -2.8 -1.2 hypothetical protein compare
BBR_RS20475 -2.8 -11.8 KH domain-containing protein compare
BBR_RS11720 -2.8 -3.3 DUF2469 domain-containing protein compare
BBR_RS20370 -2.8 -13.3 hypothetical protein compare
BBR_RS20375 -2.7 -18.5 glycosyl hydrolase compare
BBR_RS13005 -2.7 -11.8 aminopeptidase N compare
BBR_RS13390 -2.7 -2.7 hypothetical protein compare
BBR_RS10735 -2.7 -10.8 zinc metalloprotease HtpX compare
BBR_RS13890 -2.7 -7.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
BBR_RS13450 -2.7 -1.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS19160 -2.7 -0.9 phosphate ABC transporter permease subunit PstC compare
BBR_RS12605 -2.7 -1.6 glycosyltransferase family 2 protein compare
BBR_RS19260 -2.7 -12.8 hypothetical protein compare
BBR_RS16075 -2.6 -3.6 hypothetical protein compare
BBR_RS18180 -2.6 -6.4 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS16540 -2.6 -3.1 XRE family transcriptional regulator compare
BBR_RS15090 -2.6 -0.8 type II 3-dehydroquinate dehydratase compare
BBR_RS16940 -2.6 -2.6 hypothetical protein compare
BBR_RS18170 -2.6 -1.4 dihydropteroate synthase compare
BBR_RS17990 -2.6 -7.0 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS19355 -2.6 -1.0 tRNA-Gly compare
BBR_RS14215 -2.6 -1.5 peptidase compare
BBR_RS19450 -2.5 -1.0 GTPase ObgE compare
BBR_RS20720 -2.5 -3.7 DUF4422 domain-containing protein compare
BBR_RS19395 -2.5 -1.6 hypothetical protein compare
BBR_RS15805 -2.5 -1.7 prolipoprotein diacylglyceryl transferase compare
BBR_RS12310 -2.5 -1.0 signal recognition particle protein compare
BBR_RS12385 -2.4 -9.4 oxidoreductase compare
BBR_RS16095 -2.4 -3.9 imidazole glycerol phosphate synthase subunit HisF compare
BBR_RS18175 -2.4 -0.8 GTP cyclohydrolase I FolE compare
BBR_RS18565 -2.4 -0.9 CHAP domain-containing protein compare
BBR_RS17640 -2.4 -1.3 DNA-directed RNA polymerase subunit omega compare
BBR_RS14230 -2.4 -1.7 HAMP domain-containing histidine kinase compare
BBR_RS10755 -2.4 -1.6 adenylosuccinate synthase compare
BBR_RS11470 -2.4 -0.7 6-phosphogluconolactonase compare
BBR_RS14490 -2.3 -6.3 ribonuclease D compare
BBR_RS12770 -2.3 -1.8 hypothetical protein compare
BBR_RS16650 -2.3 -7.3 ABC transporter substrate-binding protein compare
BBR_RS15650 -2.2 -1.6 Holliday junction resolvase compare
BBR_RS17515 -2.2 -4.7 hypothetical protein compare
BBR_RS19200 -2.2 -7.5 hypothetical protein compare
BBR_RS16530 -2.2 -4.1 recombinase RecA compare
BBR_RS19070 -2.2 -0.7 50S ribosomal protein L33 compare
BBR_RS15520 -2.2 -1.5 shikimate 5-dehydrogenase compare
BBR_RS20435 -2.2 -0.5 CCA tRNA nucleotidyltransferase compare
BBR_RS10990 -2.2 -6.0 recombination protein RecR compare
BBR_RS15560 -2.2 -3.8 aminotransferase class V-fold PLP-dependent enzyme compare
BBR_RS14240 -2.2 -2.6 1,4-alpha-glucan branching protein GlgB compare
BBR_RS19655 -2.2 -7.4 hypothetical protein compare
BBR_RS14065 -2.1 -2.0 TnpV protein compare
BBR_RS16625 -2.1 -3.6 DUF3710 domain-containing protein compare
BBR_RS17040 -2.1 -3.3 hypothetical protein compare
BBR_RS10625 -2.1 -1.3 FHA domain-containing protein compare
BBR_RS15680 -2.1 -4.0 succinate--CoA ligase subunit alpha compare
BBR_RS16620 -2.1 -2.8 DUF3159 domain-containing protein compare
BBR_RS14475 -2.1 -7.1 formate C-acetyltransferase compare
BBR_RS14550 -2.1 -3.8 hypothetical protein compare
BBR_RS16755 -2.1 -3.7 site-specific tyrosine recombinase XerD compare
BBR_RS16810 -2.1 -5.4 aldose 1-epimerase compare
BBR_RS10660 -2.1 -9.6 esterase compare
BBR_RS16675 -2.1 -2.0 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS18690 -2.0 -4.9 diacylglycerol kinase compare
BBR_RS15085 -2.0 -0.8 3-dehydroquinate synthase compare
BBR_RS13720 -2.0 -3.6 hypothetical protein compare
BBR_RS15675 -2.0 -4.5 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS12600 -2.0 -3.4 serine acetyltransferase compare
BBR_RS11160 -2.0 -8.7 FadR family transcriptional regulator compare
BBR_RS16985 -2.0 -1.4 transcriptional repressor LexA compare
BBR_RS12140 -2.0 -5.5 LacI family transcriptional regulator compare
BBR_RS12545 -2.0 -1.4 DUF4012 domain-containing protein compare
BBR_RS19190 -2.0 -1.4 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS19205 -2.0 -13.9 Evolved beta-galactosidase subunit alpha compare
BBR_RS19820 -1.9 -8.4 ATP-binding protein of ABC transporter system compare
BBR_RS14265 -1.9 -3.4 Solute-binding protein of ABC transporter system for metals compare
BBR_RS20465 -1.9 -3.9 chromosome partitioning protein compare
BBR_RS10790 -1.9 -5.6 LacI family transcriptional regulator compare
BBR_RS12805 -1.9 -1.4 hypothetical protein compare
BBR_RS12365 -1.9 -4.1 DUF177 domain-containing protein compare
BBR_RS10905 -1.9 -2.8 nucleotide exchange factor GrpE compare
BBR_RS19010 -1.9 -8.4 glycoside hydrolase family 1 protein compare
BBR_RS16750 -1.9 -1.3 ParA family protein compare
BBR_RS20415 -1.9 -8.6 G5 domain-containing protein compare
BBR_RS15150 -1.9 -4.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BBR_RS17295 -1.9 -2.3 RNA-binding protein compare
BBR_RS11255 -1.9 -6.2 hypothetical protein compare
BBR_RS19760 -1.9 -0.8 polysaccharide ABC transporter ATPase compare
BBR_RS12700 -1.8 -5.9 hypothetical protein compare
BBR_RS10265 -1.8 -6.6 DNA replication and repair protein RecF compare
BBR_RS19095 -1.8 -8.5 magnesium transporter compare
BBR_RS13125 -1.8 -0.5 ABC transporter permease compare
BBR_RS10740 -1.8 -0.7 tRNA-Gly compare
BBR_RS16285 -1.8 -1.2 magnesium transporter CorA family protein compare
BBR_RS19815 -1.8 -9.0 ABC transporter permease compare
BBR_RS15080 -1.8 -2.0 chorismate synthase compare
BBR_RS13940 -1.8 -2.3 integrase compare
BBR_RS20870 -1.8 -1.3 hypothetical protein compare
BBR_RS15860 -1.7 -0.6 DUF2316 domain-containing protein compare
BBR_RS20420 -1.7 -5.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS19170 -1.7 -6.4 DNA-binding response regulator compare
BBR_RS15330 -1.7 -1.7 hypothetical protein compare
BBR_RS12835 -1.7 -3.4 thioredoxin compare
BBR_RS16655 -1.7 -3.4 tyrosine recombinase XerC compare
BBR_RS15655 -1.7 -2.4 Holliday junction branch migration protein RuvA compare


Specific Phenotypes

For 17 genes in this experiment

For mouse diet=HighFatHighSugar; sample=FecalPellet in Bifidobacterium breve UCC2003

For mouse diet=HighFatHighSugar; sample=FecalPellet across organisms