Experiment set10IT034 for Bifidobacterium breve UCC2003
diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3
Group: mouseMedia: + diet=HighFatHighSugar; sample=FecalPellet
Culturing: Bifido_ML2
By: Anthony Shiver on 9/1/2020
Specific Phenotypes
For 17 genes in this experiment
For mouse diet=HighFatHighSugar; sample=FecalPellet in Bifidobacterium breve UCC2003
For mouse diet=HighFatHighSugar; sample=FecalPellet across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Fructooligosaccharides(FOS) and Raffinose Utilization | 2 |
| D-ribose utilization | 1 |
| Maltose and Maltodextrin Utilization | 1 |
| Purine Utilization | 1 |
| Sucrose utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycolysis / Gluconeogenesis
- Fructose and mannose metabolism
- Galactose metabolism
- Ascorbate and aldarate metabolism
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
- Aminosugars metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| methylglyoxal degradation III | 2 | 1 | 1 |
| superpathway of methylglyoxal degradation | 8 | 2 | 1 |
| detoxification of reactive carbonyls in chloroplasts | 10 | 1 | 1 |
| glycolysis I (from glucose 6-phosphate) | 13 | 10 | 1 |
| superpathway of glycolysis and the Entner-Doudoroff pathway | 17 | 12 | 1 |
| superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass | 26 | 15 | 1 |