Experiment set10IT031 for Bifidobacterium breve UCC2003

Compare to:

diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3

200 most important genes:

  gene name fitness t score description  
BBR_RS21165 -5.1 -1.9 hypothetical protein compare
BBR_RS12300 -4.9 -2.3 30S ribosomal protein S16 compare
BBR_RS17790 -4.7 -2.4 hypothetical protein compare
BBR_RS20935 -4.5 -1.6 hypothetical protein compare
BBR_RS12805 -4.4 -1.9 hypothetical protein compare
BBR_RS20840 -4.4 -1.6 hypothetical protein compare
BBR_RS14065 -4.2 -2.2 TnpV protein compare
BBR_RS11240 -4.2 -1.8 GtrA family protein compare
BBR_RS18595 -4.1 -6.4 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
BBR_RS13735 -4.1 -0.9 Lon protease compare
BBR_RS15130 -4.1 -1.5 metal-sulfur cluster assembly factor compare
BBR_RS14275 -4.1 -0.9 30S ribosomal protein S1 compare
BBR_RS20830 -4.0 -1.4 hypothetical protein compare
BBR_RS20870 -3.9 -1.2 hypothetical protein compare
BBR_RS12910 -3.9 -9.0 galactokinase compare
BBR_RS15330 -3.9 -1.9 hypothetical protein compare
BBR_RS16170 -3.8 -1.1 hypothetical protein compare
BBR_RS19395 -3.8 -1.3 hypothetical protein compare
BBR_RS20245 -3.8 -24.9 cation-translocating P-type ATPase compare
BBR_RS14085 -3.7 -1.1 nicotinate-nucleotide adenylyltransferase compare
BBR_RS20200 -3.7 -15.0 alpha-galactosidase compare
BBR_RS17500 -3.7 -2.6 hypothetical protein compare
BBR_RS14715 -3.7 -1.1 XRE family transcriptional regulator compare
BBR_RS16300 -3.5 -2.4 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS13215 -3.5 -1.3 hypothetical protein compare
BBR_RS12235 -3.5 -0.7 hypothetical protein compare
BBR_RS13070 -3.5 -0.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS14700 -3.5 -1.6 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS15360 -3.5 -1.8 hypothetical protein compare
BBR_RS20555 -3.4 -1.4 hypothetical protein compare
BBR_RS13820 -3.4 -0.7 ATP-binding protein compare
BBR_RS13490 -3.4 -0.7 30S ribosomal protein S7 compare
BBR_RS16685 -3.4 -1.0 alcohol dehydrogenase compare
BBR_RS19740 -3.4 -15.6 DUF2142 domain-containing protein compare
BBR_RS18035 -3.3 -1.4 oligoribonuclease compare
BBR_RS11540 -3.3 -1.6 DUF1727 domain-containing protein compare
BBR_RS12370 -3.3 -0.7 cell division protein compare
BBR_RS15350 -3.3 -1.6 plasmid pRiA4b ORF-3 family protein compare
BBR_RS12500 -3.3 -0.7 sugar ABC transporter permease compare
BBR_RS10555 -3.3 -1.0 DUF3073 domain-containing protein compare
BBR_RS16540 -3.3 -2.3 XRE family transcriptional regulator compare
BBR_RS20925 -3.3 -1.2 amino acid permease compare
BBR_RS12245 -3.3 -1.0 polyribonucleotide nucleotidyltransferase compare
BBR_RS20185 -3.2 -12.0 sugar ABC transporter permease compare
BBR_RS17495 -3.2 -2.2 DUF58 domain-containing protein compare
BBR_RS12900 -3.2 -1.4 DeoR/GlpR transcriptional regulator compare
BBR_RS12720 -3.2 -1.2 hypothetical protein compare
BBR_RS17155 -3.2 -0.7 cell division protein SepF compare
BBR_RS12620 -3.2 -8.0 glycosyltransferase family 1 protein compare
BBR_RS17365 -3.2 -2.2 ABC transporter permease compare
BBR_RS20850 -3.2 -0.7 resolvase compare
BBR_RS13805 -3.2 -1.1 hypothetical protein compare
BBR_RS14850 -3.2 -1.1 VOC family protein compare
BBR_RS13420 -3.1 -1.5 DUF4230 domain-containing protein compare
BBR_RS16940 -3.1 -1.7 hypothetical protein compare
BBR_RS20180 -3.1 -12.0 carbohydrate ABC transporter permease compare
BBR_RS17455 -3.1 -3.0 DNA-binding response regulator compare
BBR_RS15850 -3.1 -2.4 ASCH domain-containing protein compare
BBR_RS19270 -3.1 -0.6 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS10255 -3.0 -1.4 chromosomal replication initiator protein DnaA compare
BBR_RS20955 -3.0 -0.9 hypothetical protein compare
BBR_RS12550 -3.0 -10.5 sugar transferase compare
BBR_RS16060 -3.0 -1.4 hypothetical protein compare
BBR_RS18215 -3.0 -2.1 AI-2E family transporter compare
BBR_RS10580 -3.0 -1.2 septation inhibitor protein compare
BBR_RS18745 -3.0 -0.9 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS11590 -3.0 -0.6 30S ribosomal protein S18 compare
BBR_RS17970 -2.9 -11.5 gfo/Idh/MocA family oxidoreductase compare
BBR_RS20190 -2.9 -14.6 Raffinose-binding protein compare
BBR_RS20195 -2.9 -12.9 ROK family transcriptional regulator compare
BBR_RS12555 -2.9 -5.6 protein-tyrosine-phosphatase compare
BBR_RS13380 -2.9 -2.0 amidophosphoribosyltransferase compare
BBR_RS16960 -2.9 -1.2 transcriptional regulator MraZ compare
BBR_RS18575 -2.9 -2.0 hypothetical protein compare
BBR_RS13705 -2.9 -4.6 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS16250 -2.8 -1.7 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS16080 -2.8 -1.2 DUF1287 domain-containing protein compare
BBR_RS15680 -2.8 -3.3 succinate--CoA ligase subunit alpha compare
BBR_RS20480 -2.8 -0.6 membrane protein compare
BBR_RS10905 -2.7 -3.9 nucleotide exchange factor GrpE compare
BBR_RS20690 -2.7 -1.2 hypothetical protein compare
BBR_RS13750 -2.7 -1.1 DivIVA domain-containing protein compare
BBR_RS10285 -2.7 -1.0 membrane protein compare
BBR_RS18120 -2.7 -1.2 hypothetical protein compare
BBR_RS20885 -2.7 -0.6 hypothetical protein compare
BBR_RS19905 -2.7 -0.6 methionine--tRNA ligase compare
BBR_RS16885 -2.6 -6.9 carbohydrate kinase compare
BBR_RS14300 -2.6 -1.6 NUDIX hydrolase compare
BBR_RS16400 -2.6 -0.9 hypothetical protein compare
BBR_RS19055 -2.6 -0.9 ferredoxin family protein compare
BBR_RS19795 -2.6 -13.5 hypothetical protein compare
BBR_RS21035 -2.5 -2.3 AMMECR1 domain-containing protein compare
BBR_RS17440 -2.5 -0.8 DUF3027 domain-containing protein compare
BBR_RS16555 -2.5 -0.5 DNA translocase FtsK compare
BBR_RS17465 -2.5 -3.2 WXG100 family type VII secretion target compare
BBR_RS15785 -2.5 -1.0 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS12880 -2.5 -4.8 Crp/Fnr family transcriptional regulator compare
BBR_RS19520 -2.5 -2.8 DUF1778 domain-containing protein compare
BBR_RS14260 -2.5 -0.7 ABC transporter ATP-binding protein compare
BBR_RS17505 -2.4 -6.9 VWA domain-containing protein compare
BBR_RS19160 -2.4 -0.7 phosphate ABC transporter permease subunit PstC compare
BBR_RS20775 -2.4 -0.9 DUF4230 domain-containing protein compare
BBR_RS20910 -2.4 -0.8 DUF1829 domain-containing protein compare
BBR_RS11135 -2.4 -9.6 dihydrodipicolinate synthase family protein compare
BBR_RS18755 -2.3 -0.8 30S ribosome-binding factor RbfA compare
BBR_RS11185 -2.3 -1.2 type I DNA topoisomerase compare
BBR_RS13375 -2.3 -1.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS14130 -2.3 -0.7 septum formation initiator family protein compare
BBR_RS12045 -2.3 -3.3 hypothetical protein compare
BBR_RS12610 -2.3 -1.6 capsular polysaccharide biosynthesis protein compare
BBR_RS10720 -2.3 -8.7 PDZ domain-containing protein compare
BBR_RS14575 -2.3 -2.3 YraN family protein compare
BBR_RS14640 -2.3 -1.6 amino acid ABC transporter permease compare
BBR_RS19260 -2.3 -10.6 hypothetical protein compare
BBR_RS17490 -2.3 -8.0 MoxR family ATPase compare
BBR_RS16530 -2.2 -1.6 recombinase RecA compare
BBR_RS10890 -2.2 -9.7 LacI family transcriptional regulator compare
BBR_RS10620 -2.2 -1.5 phosphoprotein phosphatase compare
BBR_RS19465 -2.2 -2.5 ribonuclease E/G compare
BBR_RS11720 -2.2 -1.5 DUF2469 domain-containing protein compare
BBR_RS11640 -2.2 -0.9 hypothetical protein compare
BBR_RS15090 -2.1 -0.6 type II 3-dehydroquinate dehydratase compare
BBR_RS14220 -2.1 -4.2 phosphomannomutase compare
BBR_RS11245 -2.1 -8.1 MFS transporter compare
BBR_RS14080 -2.1 -0.9 hypothetical protein compare
BBR_RS15395 -2.1 -5.5 tRNA (adenine-N1)-methyltransferase compare
BBR_RS12895 -2.1 -7.9 quinone-dependent dihydroorotate dehydrogenase compare
BBR_RS13895 -2.0 -2.9 acetylglutamate kinase compare
BBR_RS16655 -2.0 -3.3 tyrosine recombinase XerC compare
BBR_RS11470 -2.0 -0.6 6-phosphogluconolactonase compare
BBR_RS18175 -2.0 -0.6 GTP cyclohydrolase I FolE compare
BBR_RS20475 -2.0 -8.5 KH domain-containing protein compare
BBR_RS16650 -2.0 -5.3 ABC transporter substrate-binding protein compare
BBR_RS12590 -2.0 -1.0 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS11430 -1.9 -8.3 Permease of ABC transporter system compare
BBR_RS13445 -1.9 -3.7 phosphoribosylformylglycinamidine synthase compare
BBR_RS19800 -1.9 -7.3 glycosyltransferase involved in cell wall biogenesis compare
BBR_RS20435 -1.9 -0.4 CCA tRNA nucleotidyltransferase compare
BBR_RS17880 -1.9 -1.1 nucleotidyltransferase compare
BBR_RS16505 -1.9 -3.3 hypothetical protein compare
BBR_RS13325 -1.9 -2.3 hypothetical protein compare
BBR_RS19070 -1.9 -0.6 50S ribosomal protein L33 compare
BBR_RS11660 -1.9 -9.4 YHS domain-containing protein compare
BBR_RS18735 -1.9 -5.8 hypothetical protein compare
BBR_RS12905 -1.8 -0.8 galactose-1-phosphate uridylyltransferase compare
BBR_RS21170 -1.8 -4.5 membrane protein insertion efficiency factor YidD compare
BBR_RS15305 -1.8 -2.5 hypothetical protein compare
BBR_RS18800 -1.8 -2.7 50S ribosomal protein L17 compare
BBR_RS17510 -1.8 -3.3 VWA domain-containing protein compare
BBR_RS15650 -1.8 -0.8 Holliday junction resolvase compare
BBR_RS15070 -1.8 -1.2 endolytic transglycosylase MltG compare
BBR_RS20370 -1.7 -8.4 hypothetical protein compare
BBR_RS15715 -1.7 -2.5 Cof-type HAD-IIB family hydrolase compare
BBR_RS15675 -1.7 -3.0 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS19010 -1.7 -7.5 glycoside hydrolase family 1 protein compare
BBR_RS12780 -1.7 -3.0 hypothetical protein compare
BBR_RS14945 -1.7 -3.2 peptidase E compare
BBR_RS19095 -1.7 -7.7 magnesium transporter compare
BBR_RS13450 -1.7 -0.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS12605 -1.7 -1.0 glycosyltransferase family 2 protein compare
BBR_RS21025 -1.7 -2.3 hypothetical protein compare
BBR_RS12820 -1.6 -4.6 hypothetical protein compare
BBR_RS12995 -1.6 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS12600 -1.6 -2.4 serine acetyltransferase compare
BBR_RS15230 -1.6 -1.1 elongation factor 4 compare
BBR_RS15200 -1.6 -3.9 MFS transporter compare
BBR_RS14985 -1.6 -1.1 ATP-dependent DNA helicase PcrA compare
BBR_RS19355 -1.5 -0.6 tRNA-Gly compare
BBR_RS18485 -1.5 -1.5 IS30 family transposase compare
BBR_RS18050 -1.5 -0.9 threonylcarbamoyl-AMP synthase compare
BBR_RS19450 -1.5 -0.6 GTPase ObgE compare
BBR_RS17460 -1.5 -3.3 TPM domain-containing protein compare
BBR_RS15150 -1.5 -3.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BBR_RS15745 -1.5 -1.5 hydrolase or phosphatase compare
BBR_RS15805 -1.5 -1.0 prolipoprotein diacylglyceryl transferase compare
BBR_RS15460 -1.5 -1.3 hypothetical protein compare
BBR_RS15915 -1.5 -0.4 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS11345 -1.5 -4.2 4'-phosphopantetheinyl transferase compare
BBR_RS17065 -1.5 -3.3 aldo/keto reductase compare
BBR_RS17990 -1.5 -4.8 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS17755 -1.5 -3.2 D-ribose pyranase compare
BBR_RS13890 -1.5 -3.8 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
BBR_RS12310 -1.4 -0.5 signal recognition particle protein compare
BBR_RS10780 -1.4 -5.7 sucrose phosphorylase compare
BBR_RS13330 -1.4 -1.9 hypothetical protein compare
BBR_RS15080 -1.4 -0.8 chorismate synthase compare
BBR_RS11160 -1.4 -5.5 FadR family transcriptional regulator compare
BBR_RS14655 -1.4 -2.9 AraC family transcriptional regulator compare
BBR_RS16195 -1.4 -1.7 hypothetical protein compare
BBR_RS14225 -1.4 -2.3 ComF family protein compare
BBR_RS12385 -1.4 -5.6 oxidoreductase compare
BBR_RS19240 -1.4 -4.4 LacI family transcriptional regulator compare
BBR_RS13125 -1.4 -0.4 ABC transporter permease compare
BBR_RS15860 -1.4 -0.4 DUF2316 domain-containing protein compare
BBR_RS20915 -1.4 -1.4 hypothetical protein compare
BBR_RS14215 -1.4 -0.8 peptidase compare
BBR_RS14775 -1.4 -1.6 hypothetical protein compare
BBR_RS18565 -1.4 -0.5 CHAP domain-containing protein compare
BBR_RS18690 -1.4 -3.2 diacylglycerol kinase compare
BBR_RS17740 -1.4 -2.1 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For mouse diet=HighFatHighSugar; sample=FecalPellet in Bifidobacterium breve UCC2003

For mouse diet=HighFatHighSugar; sample=FecalPellet across organisms