Experiment set10IT028 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Isovanillin 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.7 -5.5 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1544 -5.4 -5.2 SirA-like protein compare
Psyr_4340 -4.3 -9.9 phosphomethylpyrimidine kinase, putative compare
Psyr_0464 -4.2 -2.9 hypothetical protein compare
Psyr_4740 -3.7 -8.2 thiazole-phosphate synthase compare
Psyr_4686 -3.4 -7.5 8-amino-7-oxononanoate synthase compare
Psyr_4684 -3.4 -4.0 biotin synthesis protein BioC compare
Psyr_3008 -3.1 -5.2 Undecaprenyl-diphosphatase compare
Psyr_4687 -3.1 -7.5 biotin synthase compare
Psyr_4341 -3.0 -7.8 thiamine-phosphate diphosphorylase compare
Psyr_4683 -3.0 -5.3 dethiobiotin synthase compare
Psyr_0917 -2.9 -11.6 ABC-2 compare
Psyr_0918 -2.8 -13.2 ABC transporter compare
Psyr_4627 -2.8 -1.9 dimethyladenosine transferase compare
Psyr_0454 -2.7 -6.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4203 -2.6 -1.8 SsrA-binding protein compare
Psyr_3620 -2.5 -2.9 hypothetical protein compare
Psyr_0487 -2.5 -3.7 glutathione synthase compare
Psyr_1613 -2.5 -3.6 septum site-determining protein MinC compare
Psyr_4091 -2.4 -4.9 8-oxo-dGTPase compare
Psyr_1935 -2.3 -4.0 Protein of unknown function DUF796 compare
Psyr_RNA61 -2.3 -3.0 tRNA-Gly compare
Psyr_0849 -2.3 -7.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_3358 -2.2 -3.4 transmembrane pair compare
Psyr_1751 -2.2 -4.6 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4884 -2.1 -5.0 Rhodanese-like protein compare
Psyr_0259 -2.1 -3.4 Osmolarity sensor protein envZ compare
Psyr_1419 -2.1 -3.4 preQ(0) biosynthesis protein QueC compare
Psyr_5135 -2.1 -1.6 Protein of unknown function DUF37 compare
Psyr_2620 -2.0 -2.0 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0383 -1.9 -3.7 Twin-arginine translocation protein TatB compare
Psyr_0574 -1.8 -4.1 protease FtsH subunit HflK compare
Psyr_3473 -1.8 -3.1 Flagellar P-ring protein compare
Psyr_0215 -1.8 -9.0 Exodeoxyribonuclease III xth compare
Psyr_3808 -1.7 -0.9 hypothetical protein compare
Psyr_4566 -1.7 -7.2 Peptidase M23B compare
Psyr_2612 -1.7 -2.4 syrP protein, putative compare
Psyr_2897 -1.7 -5.3 regulatory protein, LuxR:Response regulator receiver compare
Psyr_4194 -1.7 -4.5 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_0575 -1.7 -3.5 protease FtsH subunit HflC compare
Psyr_0571 -1.6 -4.4 tRNA isopentenyltransferase compare
Psyr_0857 -1.6 -3.1 [SSU ribosomal protein S18P]-alanine acetyltransferase compare
Psyr_1930 -1.6 -3.0 hypothetical protein compare
Psyr_2642 -1.5 -3.6 hypothetical protein compare
Psyr_3202 -1.5 -2.5 NADH dehydrogenase subunit G compare
Psyr_2977 -1.5 -3.5 cointegrate resolution protein T compare
Psyr_1929 -1.5 -4.2 hypothetical protein compare
Psyr_0565 -1.4 -5.5 Protein of unknown function UPF0126 compare
Psyr_1931 -1.4 -4.0 hypothetical protein compare
Psyr_4254 -1.4 -3.0 conserved hypothetical protein compare
Psyr_2769 -1.4 -3.6 conserved hypothetical protein compare
Psyr_3581 -1.4 -4.4 ribosomal large subunit pseudouridine synthase B compare
Psyr_1667 -1.4 -4.5 Colicin V production protein compare
Psyr_2639 -1.4 -4.7 hypothetical protein compare
Psyr_0475 -1.4 -0.9 Protein of unknown function YGGT compare
Psyr_3107 -1.3 -1.8 conserved hypothetical protein compare
Psyr_3807 -1.3 -4.0 hypothetical protein compare
Psyr_2664 -1.3 -4.3 hypothetical protein compare
Psyr_1418 -1.3 -2.7 Radical SAM compare
Psyr_2345 -1.3 -3.3 ea59 protein compare
Psyr_1670 -1.3 -1.7 Short-chain dehydrogenase/reductase SDR compare
Psyr_1373 -1.3 -2.6 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_5133 -1.3 -4.1 tRNA modification GTPase trmE compare
Psyr_4991 -1.3 -2.1 hypothetical protein compare
Psyr_4115 -1.3 -2.3 phosphoheptose isomerase compare
Psyr_1378 -1.3 -2.3 RecA protein compare
Psyr_3164 -1.2 -6.0 Protein of unknown function UPF0005 compare
Psyr_0919 -1.2 -7.0 Chromosome segregation ATPase-like protein compare
Psyr_0529 -1.2 -3.9 Glycosyl transferase, group 1 compare
Psyr_2980 -1.2 -2.6 UDP-glucose pyrophosphorylase compare
Psyr_1824 -1.2 -3.0 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_1198 -1.2 -2.1 type III secretion protein HrpF compare
Psyr_4754 -1.2 -2.2 16S rRNA m(2)G-966 methyltransferase compare
Psyr_4089 -1.2 -4.8 PAS compare
Psyr_3213 -1.2 -2.2 Propeptide, PepSY amd peptidase M4 compare
Psyr_2360 -1.2 -2.0 CBS compare
Psyr_1247 -1.2 -1.5 conserved hypothetical protein compare
Psyr_4978 -1.2 -2.2 hypothetical protein compare
Psyr_3419 -1.2 -4.7 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_2601 -1.2 -4.6 regulatory protein, LuxR compare
Psyr_2182 -1.2 -3.6 hypothetical protein compare
Psyr_0920 -1.1 -8.3 Glycosyl transferase, group 1 compare
Psyr_3954 -1.1 -3.5 GTP-binding protein LepA compare
Psyr_2982 -1.1 -2.8 conserved hypothetical protein compare
Psyr_2855 -1.1 -3.3 methionine synthase (B12-independent) compare
Psyr_0826 -1.1 -5.1 glucose-6-phosphate isomerase compare
Psyr_0524 -1.1 -2.7 Lipopolysaccharide kinase compare
Psyr_0954 -1.1 -1.9 Protein of unknown function UPF0153 compare
Psyr_2927 -1.1 -2.0 transcriptional regulator, TetR family compare
Psyr_1919 -1.1 -3.6 hypothetical protein compare
Psyr_3640 -1.0 -1.4 conserved hypothetical protein compare
Psyr_0831 -1.0 -2.1 Two-component response regulator CbrB compare
Psyr_3013 -1.0 -1.6 magnesium chelatase subunit ChlD compare
Psyr_5132 -1.0 -2.2 Glucose-inhibited division protein A subfamily compare
Psyr_3637 -1.0 -6.1 Glycosyl transferase, family 4 compare
Psyr_3462 -1.0 -1.6 conserved hypothetical protein compare
Psyr_2321 -1.0 -4.6 YD repeat protein compare
Psyr_0635 -1.0 -2.6 MaoC-like dehydratase compare
Psyr_2848 -1.0 -2.0 hypothetical protein compare
Psyr_3665 -1.0 -2.4 conserved hypothetical protein compare
Psyr_1907 -1.0 -1.9 GTP cyclohydrolase I compare
Psyr_2356 -1.0 -2.5 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_1783 -1.0 -1.9 CDS compare
Psyr_4362 -1.0 -2.2 Rare lipoprotein A compare
Psyr_1227 -1.0 -2.0 Queuosine biosynthesis protein compare
Psyr_2854 -1.0 -3.6 conserved hypothetical protein compare
Psyr_1269 -1.0 -2.4 phosphoribosylformylglycinamidine synthase compare
Psyr_0549 -1.0 -2.1 Metallophosphoesterase compare
Psyr_2851 -1.0 -1.6 conserved hypothetical protein compare
Psyr_3083 -1.0 -2.5 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_2383 -1.0 -1.4 Protein of unknown function DUF72 compare
Psyr_2757 -0.9 -2.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0044 -0.9 -1.2 transferase hexapeptide repeat protein compare
Psyr_2344 -0.9 -2.3 CDS compare
Psyr_1975 -0.9 -1.9 Integrase, catalytic region compare
Psyr_2348 -0.9 -1.5 hypothetical protein compare
Psyr_4673 -0.9 -1.9 Coenzyme PQQ synthesis D compare
Psyr_1121 -0.9 -2.2 6-phosphogluconolactonase compare
Psyr_3449 -0.9 -3.0 Flagellar hook-length control protein compare
Psyr_0034 -0.9 -0.9 tryptophan synthase, beta chain compare
Psyr_1889 -0.9 -3.5 type III effector HopH1 compare
Psyr_2088 -0.9 -1.2 2-methylaconitate cis-trans isomerase compare
Psyr_3084 -0.9 -2.0 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1555 -0.9 -2.2 Cobyrinic acid a,c-diamide synthase compare
Psyr_3701 -0.9 -1.7 thioredoxin, putative compare
Psyr_4996 -0.9 -2.9 hypothetical protein compare
Psyr_0053 -0.9 -3.5 conserved hypothetical protein compare
Psyr_2137 -0.9 -2.3 molybdopterin molybdochelatase compare
Psyr_1097 -0.9 -1.0 glycine cleavage system H protein compare
Psyr_1350 -0.9 -2.1 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_0097 -0.9 -3.7 hypothetical protein compare
Psyr_0377 -0.9 -3.9 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_3728 -0.9 -3.2 hypothetical protein compare
Psyr_2629 -0.9 -3.8 von Willebrand factor, type A compare
Psyr_3294 -0.9 -2.7 ABC transporter compare
Psyr_2702 -0.9 -4.7 UDP-galactopyranose mutase compare
Psyr_4584 -0.9 -4.5 Protein of unknown function DUF144 compare
Psyr_1410 -0.9 -1.9 Holliday junction DNA helicase RuvB compare
Psyr_2460 -0.9 -2.9 inner membrane peptidase, Serine peptidase, MEROPS family S49 compare
Psyr_1811 -0.9 -1.6 transcriptional regulator, GntR family compare
Psyr_3090 -0.8 -1.4 hypothetical protein compare
Psyr_1747 -0.8 -2.8 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_4051 -0.8 -1.9 transcriptional regulator, ArsR family compare
Psyr_3428 -0.8 -4.1 CheW-like protein compare
Psyr_3681 -0.8 -1.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_3806 -0.8 -1.9 hypothetical protein compare
Psyr_2095 -0.8 -3.2 Conserved TM helix compare
Psyr_4455 -0.8 -1.3 conserved hypothetical protein compare
Psyr_3432 -0.8 -1.6 MotA/TolQ/ExbB proton channel compare
Psyr_3866 -0.8 -3.0 conserved hypothetical protein compare
Psyr_4015 -0.8 -0.8 conserved domain protein compare
Psyr_4039 -0.8 -3.5 Protein of unknown function DUF796 compare
Psyr_4361 -0.8 -2.3 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_2593 -0.8 -2.5 ABC transporter compare
Psyr_2391 -0.8 -3.8 Protein of unknown function DUF182 compare
Psyr_2556 -0.8 -3.0 dCTP deaminase compare
Psyr_1816 -0.8 -2.7 transcriptional regulator, GntR family compare
Psyr_0394 -0.8 -2.5 Heat shock protein HslU compare
Psyr_2065 -0.8 -2.1 transcription elongation factor GreB compare
Psyr_3280 -0.8 -1.7 methylthioadenosine phosphorylase compare
Psyr_2695 -0.8 -1.8 conserved hypothetical protein compare
Psyr_2192 -0.8 -2.5 transcriptional regulator, TetR family compare
Psyr_0916 -0.8 -4.7 GDP-mannose 4,6-dehydratase compare
Psyr_1461 -0.8 -3.0 hypothetical protein compare
Psyr_1317 -0.8 -1.4 conserved hypothetical protein compare
Psyr_2221 -0.8 -1.3 sarcosine oxidase, gamma subunit compare
Psyr_3675 -0.8 -2.1 adenosylcobinamide kinase compare
Psyr_0835 -0.8 -2.9 transcriptional regulator, TraR/DksA family compare
Psyr_4093 -0.8 -2.7 glutamate N-acetyltransferase compare
Psyr_5130 -0.8 -4.1 chromosome segregation ATPase compare
Psyr_2215 -0.8 -2.8 CheW-like protein compare
Psyr_4940 -0.8 -1.5 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_2596 -0.8 -3.7 PAS compare
Psyr_0938 -0.8 -4.6 hypothetical protein compare
Psyr_3427 -0.8 -1.8 conserved hypothetical protein compare
Psyr_3004 -0.8 -2.0 transcriptional regulator, LysR family compare
Psyr_1389 -0.8 -1.8 Protein of unknown function DUF1456 compare
Psyr_1095 -0.8 -2.4 Glycine cleavage system T protein compare
Psyr_4408 -0.7 -3.8 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4562 -0.7 -3.3 conserved domain protein compare
Psyr_0928 -0.7 -3.9 hypothetical protein compare
Psyr_2668 -0.7 -2.1 Helix-turn-helix, Fis-type compare
Psyr_2285 -0.7 -1.1 Twin-arginine translocation pathway signal compare
Psyr_1917 -0.7 -2.7 conserved hypothetical protein compare
Psyr_2346 -0.7 -2.4 conserved hypothetical protein compare
Psyr_3688 -0.7 -2.0 conserved hypothetical protein compare
Psyr_1039 -0.7 -1.5 FecR protein compare
Psyr_3028 -0.7 -1.7 Protein of unknown function DUF28 compare
Psyr_4100 -0.7 -2.1 D-alanine--D-alanine ligase compare
Psyr_3465 -0.7 -2.7 Flagellar protein FlaG protein compare
Psyr_0033 -0.7 -1.5 tryptophan synthase, alpha chain compare
Psyr_3583 -0.7 -2.3 condensin subunit ScpB compare
Psyr_1934 -0.7 -2.2 conserved hypothetical protein compare
Psyr_4112 -0.7 -4.0 Protein of unknown function UPF0011 compare
Psyr_2648 -0.7 -4.1 hypothetical protein compare
Psyr_3224 -0.7 -1.9 Low molecular weight phosphotyrosine protein phosphatase compare
Psyr_0832 -0.7 -3.9 Two-component sensor kinase CbrA compare
Psyr_2579 -0.7 -2.6 Aldehyde dehydrogenase compare
Psyr_2847 -0.7 -0.9 hypothetical protein compare
Psyr_0616 -0.7 -1.4 conserved domain protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Isovanillin across organisms