Experiment set10IT027 for Paraburkholderia graminis OAS925

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Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Group: in planta
Media: + Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
Culturing: Burkholderia_OAS925_ML2, pot, at 26 (C), (Solid)
By: Marta Torres on 2-Aug-21

Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days in Paraburkholderia graminis OAS925

For in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days across organisms

SEED Subsystems

Subsystem #Specific
Cysteine Biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
sulfate activation for sulfonation 2 2 1
assimilatory sulfate reduction III 3 3 1
assimilatory sulfate reduction II 3 2 1
sulfite oxidation III 3 2 1
assimilatory sulfate reduction I 4 4 1
assimilatory sulfate reduction IV 4 3 1
selenate reduction 5 2 1
dissimilatory sulfate reduction I (to hydrogen sufide)) 5 2 1
superpathway of sulfur metabolism (Desulfocapsa sulfoexigens) 6 3 1
superpathway of thiosulfate metabolism (Desulfovibrio sulfodismutans) 6 2 1
superpathway of sulfate assimilation and cysteine biosynthesis 9 9 1
superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) 10 7 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 11 1
superpathway of sulfide oxidation (phototrophic sulfur bacteria) 12 4 1
superpathway of seleno-compound metabolism 19 5 1