Experiment set10IT025 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium malate (C) and Ammonium chloride (N); with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS01405 +4.5 15.2 sensor histidine kinase compare
PFLU_RS07935 +3.5 7.1 type 1 fimbrial protein compare
PFLU_RS21665 +3.5 23.6 MinD/ParA family protein compare
PFLU_RS25735 +3.3 24.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25730 +3.2 27.6 PAS domain S-box protein compare
PFLU_RS24015 +2.8 6.2 cold-shock protein compare
PFLU_RS24715 +2.3 20.3 PTS system trehalose-specific EIIBC component compare
PFLU_RS24160 +2.3 17.2 HAMP domain-containing protein compare
PFLU_RS24700 +2.1 16.9 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS07930 +2.1 11.3 molecular chaperone compare
PFLU_RS05620 +1.9 11.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS08380 +1.8 14.0 3-deoxy-7-phosphoheptulonate synthase compare
PFLU_RS29505 +1.8 8.8 DNA-directed RNA polymerase subunit omega compare
PFLU_RS04140 +1.8 6.1 response regulator transcription factor compare
PFLU_RS28320 +1.6 8.3 glutathione synthase compare
PFLU_RS18550 +1.5 11.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS18555 +1.5 10.9 ATP-dependent Clp protease adapter ClpS compare
PFLU_RS31290 +1.5 4.7 EamA family transporter compare
PFLU_RS22320 +1.3 11.9 cytochrome-c oxidase, cbb3-type subunit I compare
PFLU_RS21670 +1.3 7.9 flagellar biosynthesis protein FlhF compare
PFLU_RS28310 +1.3 3.8 response regulator compare
PFLU_RS21795 +1.3 11.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS23045 +1.2 8.1 beta-ketoacyl-ACP synthase II compare
PFLU_RS29555 +1.2 10.0 HDOD domain-containing protein compare
PFLU_RS28665 +1.2 10.9 threonine ammonia-lyase, biosynthetic compare
PFLU_RS30900 +1.2 4.2 hypothetical protein compare
PFLU_RS28295 +1.2 10.8 response regulator compare
PFLU_RS22325 +1.2 9.0 cytochrome-c oxidase, cbb3-type subunit II compare
PFLU_RS22335 +1.2 8.7 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS03025 +1.2 6.6 tRNA dihydrouridine synthase DusB compare
PFLU_RS28470 +1.2 7.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS22395 +1.2 6.7 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS03555 +1.2 1.6 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS18595 +1.1 5.2 cupin domain-containing protein compare
PFLU_RS31010 +1.1 2.2 transposase compare
PFLU_RS28290 +1.1 8.2 chemotaxis protein CheW compare
PFLU_RS01930 +1.1 7.4 phasin family protein compare
PFLU_RS31200 +1.1 6.8 hypothetical protein compare
PFLU_RS23180 +1.1 8.8 flagellar basal body rod protein FlgB compare
PFLU_RS06055 +1.1 1.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS26950 +1.1 8.8 outer membrane beta-barrel protein compare
PFLU_RS27445 +1.1 9.4 phosphotransferase compare
PFLU_RS28300 +1.1 6.2 chemotaxis protein compare
PFLU_RS24475 +1.1 9.8 AmpG family muropeptide MFS transporter compare
PFLU_RS28415 +1.1 6.7 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
PFLU_RS00310 +1.0 1.0 twin transmembrane helix small protein compare
PFLU_RS24020 +1.0 5.3 RDD family protein compare
PFLU_RS21855 +1.0 8.1 flagellar basal-body rod protein FlgG compare
PFLU_RS24705 +1.0 8.5 carbohydrate porin compare
PFLU_RS14555 +1.0 7.0 glutathione-disulfide reductase compare
PFLU_RS21710 +1.0 6.9 flagellar type III secretion system pore protein FliP compare
PFLU_RS25875 +1.0 4.7 transcription elongation factor GreA compare
PFLU_RS29885 +1.0 7.4 LysR family transcriptional regulator compare
PFLU_RS24125 +1.0 5.9 cold-shock protein compare
PFLU_RS23205 +1.0 7.6 flagellar protein FlgN compare
PFLU_RS23195 +1.0 8.5 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS07275 +1.0 2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS21760 +0.9 8.1 flagellar protein export ATPase FliI compare
PFLU_RS21700 +0.9 6.0 flagellar type III secretion system protein FliR compare
PFLU_RS23165 +0.9 8.8 flagellar hook protein FlgE compare
PFLU_RS04345 +0.9 5.8 ribosome-associated protein compare
PFLU_RS21765 +0.9 6.2 flagellar assembly protein FliH compare
PFLU_RS00190 +0.9 2.7 DUF883 domain-containing protein compare
PFLU_RS24695 +0.9 2.2 PTS glucose transporter subunit IIB compare
PFLU_RS03995 +0.9 1.5 hypothetical protein compare
PFLU_RS21675 +0.9 8.0 flagellar biosynthesis protein FlhA compare
PFLU_RS21825 +0.9 7.0 ketoacyl-ACP synthase III compare
PFLU_RS21770 +0.9 6.2 flagellar motor switch protein FliG compare
PFLU_RS28305 +0.9 5.8 purine-binding chemotaxis protein CheW compare
PFLU_RS27305 +0.9 6.0 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS21780 +0.9 4.0 flagellar hook-basal body complex protein FliE compare
PFLU_RS22835 +0.9 6.3 amidotransferase compare
PFLU_RS23830 +0.9 7.4 TrkH family potassium uptake protein compare
PFLU_RS02180 +0.9 1.4 thioredoxin TrxC compare
PFLU_RS08600 +0.9 3.7 glutaredoxin family protein compare
PFLU_RS21725 +0.9 5.8 flagellar motor switch protein FliM compare
PFLU_RS28785 +0.8 7.0 glutamine synthetase compare
PFLU_RS21660 +0.8 7.0 RNA polymerase sigma factor FliA compare
PFLU_RS31755 +0.8 2.1 hypothetical protein compare
PFLU_RS21775 +0.8 7.0 flagellar basal body M-ring protein FliF compare
PFLU_RS25225 +0.8 5.8 disulfide bond formation protein B compare
PFLU_RS21300 +0.8 4.6 cysteine hydrolase compare
PFLU_RS21755 +0.8 5.7 flagella biosynthesis chaperone FliJ compare
PFLU_RS19325 +0.8 4.0 DASS family sodium-coupled anion symporter compare
PFLU_RS14715 +0.8 4.9 protein-glutamate O-methyltransferase CheR compare
PFLU_RS21845 +0.8 5.4 flagellar basal body P-ring protein FlgI compare
PFLU_RS23175 +0.8 5.0 flagellar basal body rod protein FlgC compare
PFLU_RS21850 +0.8 6.8 flagellar basal body L-ring protein FlgH compare
PFLU_RS18955 +0.8 6.4 hydroxymethylglutaryl-CoA lyase compare
PFLU_RS21810 +0.8 7.6 flagellar filament capping protein FliD compare
PFLU_RS26215 +0.8 6.2 PilZ domain-containing protein compare
PFLU_RS22365 +0.8 4.8 membrane protein compare
PFLU_RS21735 +0.8 6.5 flagellar hook-length control protein FliK compare
PFLU_RS07695 +0.8 3.3 beta-N-acetylhexosaminidase compare
PFLU_RS01285 +0.8 1.8 HAMP domain-containing protein compare
PFLU_RS29880 +0.8 6.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS28735 +0.8 4.4 thiol-disulfide isomerase compare
PFLU_RS21830 +0.8 7.2 flagellar hook-associated protein 3 compare
PFLU_RS21805 +0.8 6.5 flagellar export chaperone FliS compare
PFLU_RS13370 +0.8 1.4 DUF2790 domain-containing protein compare
PFLU_RS06855 +0.8 2.1 helix-turn-helix transcriptional regulator compare
PFLU_RS14800 +0.7 6.2 UDP-glucose/GDP-mannose dehydrogenase family protein compare
PFLU_RS04195 +0.7 2.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS23920 +0.7 1.8 septation protein A compare
PFLU_RS31185 +0.7 3.5 hypothetical protein compare
PFLU_RS21835 +0.7 6.7 flagellar hook-associated protein FlgK compare
PFLU_RS22195 +0.7 3.1 DEAD/DEAH box helicase compare
PFLU_RS17615 +0.7 2.3 DeoR/GlpR transcriptional regulator compare
PFLU_RS09720 +0.7 2.0 single-stranded DNA-binding protein compare
PFLU_RS21705 +0.7 4.9 flagellar biosynthesis protein FliQ compare
PFLU_RS29875 +0.7 6.1 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS03570 +0.7 1.6 hypothetical protein compare
PFLU_RS15785 +0.7 2.7 type II secretion system protein GspH compare
PFLU_RS29105 +0.7 5.7 DedA family protein compare
PFLU_RS31490 +0.7 1.8 hypothetical protein compare
PFLU_RS21360 +0.7 2.0 MarR family transcriptional regulator compare
PFLU_RS09060 +0.7 3.4 DUF4389 domain-containing protein compare
PFLU_RS29090 +0.7 4.4 exopolyphosphatase compare
PFLU_RS29890 +0.7 4.9 transcriptional regulator HexR compare
PFLU_RS30345 +0.7 1.6 DUF2559 family protein compare
PFLU_RS01380 +0.7 4.0 GMP/IMP nucleotidase compare
PFLU_RS17895 +0.7 4.0 glycosyltransferase family 2 protein compare
PFLU_RS08760 +0.7 1.7 phosphonate C-P lyase system protein PhnG compare
PFLU_RS22725 +0.7 2.2 transcriptional regulator compare
PFLU_RS00410 +0.6 4.9 cytochrome c4 compare
PFLU_RS21840 +0.6 5.0 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS21695 +0.6 4.1 flagellar biosynthesis protein FlhB compare
PFLU_RS14440 +0.6 1.8 hypothetical protein compare
PFLU_RS13085 +0.6 2.3 DUF1315 family protein compare
PFLU_RS02455 +0.6 2.2 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS01435 +0.6 5.0 agmatine deiminase compare
PFLU_RS21655 +0.6 3.1 response regulator compare
PFLU_RS18680 +0.6 2.9 toxin compare
PFLU_RS20570 +0.6 3.8 class I SAM-dependent methyltransferase compare
PFLU_RS18515 +0.6 2.0 fluoride efflux transporter CrcB compare
PFLU_RS06165 +0.6 2.3 hypothetical protein compare
PFLU_RS00075 +0.6 4.8 Trk system potassium transporter TrkA compare
PFLU_RS21730 +0.6 4.7 flagellar basal body-associated protein FliL compare
PFLU_RS13365 +0.6 1.7 hypothetical protein compare
PFLU_RS22630 +0.6 5.5 phosphoenolpyruvate synthase compare
PFLU_RS29590 +0.6 4.0 serine/threonine-protein phosphatase compare
PFLU_RS25670 +0.6 5.3 bifunctional aminoglycoside phosphotransferase/ATP-binding protein compare
PFLU_RS20345 +0.6 2.5 hypothetical protein compare
PFLU_RS00405 +0.6 3.6 cytochrome c5 family protein compare
PFLU_RS13765 +0.6 1.8 hypothetical protein compare
PFLU_RS21270 +0.6 3.2 acireductone dioxygenase compare
PFLU_RS04200 +0.6 4.8 cytochrome bc complex cytochrome b subunit compare
PFLU_RS26955 +0.6 4.3 sugar nucleotide-binding protein compare
PFLU_RS08735 +0.6 1.5 histidine phosphatase family protein compare
PFLU_RS03770 +0.6 4.9 sulfate adenylyltransferase subunit CysN compare
PFLU_RS23260 +0.6 3.6 carbon storage regulator CsrA compare
PFLU_RS09065 +0.6 3.8 phosphohistidine phosphatase SixA compare
PFLU_RS03980 +0.6 3.5 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS17950 +0.6 1.1 hypothetical protein compare
PFLU_RS20455 +0.6 4.3 DUF979 domain-containing protein compare
PFLU_RS01685 +0.6 2.5 nitrogen regulation protein NR(I) compare
PFLU_RS02645 +0.6 3.2 hypothetical protein compare
PFLU_RS29545 +0.6 4.5 hydrogen peroxide-inducible genes activator compare
PFLU_RS08105 +0.6 3.9 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS00235 +0.6 3.0 gamma carbonic anhydrase family protein compare
PFLU_RS23890 +0.6 2.0 pseudouridine synthase compare
PFLU_RS03030 +0.6 4.3 DUF3426 domain-containing protein compare
PFLU_RS25750 +0.6 2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS07725 +0.6 2.0 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS01660 +0.6 1.9 rhodanese-like domain-containing protein compare
PFLU_RS24305 +0.6 0.9 antibiotic biosynthesis monooxygenase compare
PFLU_RS01885 +0.5 2.5 Sec-independent protein translocase subunit TatB compare
PFLU_RS21820 +0.5 4.2 flagellin compare
PFLU_RS02950 +0.5 3.2 copper chaperone PCu(A)C compare
PFLU_RS13850 +0.5 2.2 hypothetical protein compare
PFLU_RS05720 +0.5 4.2 OmpA family protein compare
PFLU_RS24280 +0.5 1.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS22375 +0.5 4.1 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS23130 +0.5 3.0 response regulator transcription factor compare
PFLU_RS02630 +0.5 3.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
PFLU_RS04090 +0.5 3.0 ABC transporter ATP-binding protein compare
PFLU_RS07960 +0.5 2.6 hypothetical protein compare
PFLU_RS05985 +0.5 1.2 ABC transporter permease compare
PFLU_RS12220 +0.5 1.8 AraC family transcriptional regulator compare
PFLU_RS22100 +0.5 3.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PFLU_RS28910 +0.5 3.5 glycine cleavage system protein GcvH compare
PFLU_RS23995 +0.5 3.6 glycine cleavage system protein GcvH compare
PFLU_RS18110 +0.5 2.9 GlxA family transcriptional regulator compare
PFLU_RS27440 +0.5 3.3 nucleotidyltransferase family protein compare
PFLU_RS12445 +0.5 4.4 TonB-dependent siderophore receptor compare
PFLU_RS29990 +0.5 2.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS01315 +0.5 2.1 Hsp33 family molecular chaperone HslO compare
PFLU_RS25925 +0.5 1.8 RnfH family protein compare
PFLU_RS14680 +0.5 1.9 cbb3-type cytochrome c oxidase subunit 3 compare
PFLU_RS14815 +0.5 3.5 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
PFLU_RS26075 +0.5 2.5 IS66 family insertion sequence hypothetical protein compare
PFLU_RS18540 +0.5 4.0 arginyltransferase compare
PFLU_RS16960 +0.5 1.9 LysR family transcriptional regulator compare
PFLU_RS11830 +0.5 1.1 hypothetical protein compare
PFLU_RS21860 +0.5 2.5 flagellar basal body rod protein FlgF compare
PFLU_RS08485 +0.5 1.4 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS23170 +0.5 3.0 flagellar hook assembly protein FlgD compare
PFLU_RS09960 +0.5 2.6 DUF1232 domain-containing protein compare
PFLU_RS20585 +0.5 4.2 LysR family transcriptional regulator compare
PFLU_RS00155 +0.5 3.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare


Specific Phenotypes

For 15 genes in this experiment

For stress Sodium malate in Pseudomonas fluorescens SBW25-INTG

For stress Sodium malate across organisms