Experiment set10IT019 for Bacteroides thetaiotaomicron VPI-5482
Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM
Group: stressMedia: Varel_Bryant_medium_Glucose + Trimethoprim (0.025 mM) + Dimethyl Sulfoxide (0.25 vol%)
Culturing: Btheta_ML6a, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Hans on 6/18/18
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, 20 mM D-Glucose, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 11 genes in this experiment
For stress Trimethoprim in Bacteroides thetaiotaomicron VPI-5482
For stress Trimethoprim across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glutamate metabolism
- Arginine and proline metabolism
- Nitrogen metabolism
- Purine metabolism
- Aminophosphonate metabolism
- High-mannose type N-glycan biosynthesis
- Nucleotide sugars metabolism
- Glycerophospholipid metabolism
- Sphingolipid metabolism
- Pyruvate metabolism
- Propanoate metabolism
- Butanoate metabolism
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: