Experiment set10IT018 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Aristolochic Acid 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Psyr_3601 +1.1 3.0 conserved hypothetical protein compare
Psyr_3152 +1.1 1.1 hypothetical protein compare
Psyr_3293 +1.0 2.8 UspA compare
Psyr_4050 +1.0 2.3 Protein of unknown function DUF479 compare
Psyr_4582 +1.0 1.8 hypothetical protein compare
Psyr_1447 +1.0 1.9 conserved hypothetical protein compare
Psyr_0437 +1.0 1.9 acyl carrier protein, putative compare
Psyr_3135 +0.9 1.7 transcriptional regulator, GntR family compare
Psyr_2787 +0.9 2.0 hypothetical protein compare
Psyr_2987 +0.9 3.2 Cof protein:HAD-superfamily hydrolase, subfamily IIB compare
Psyr_3199 +0.9 2.6 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_2717 +0.8 3.3 Antibiotic biosynthesis monooxygenase compare
Psyr_3311 +0.8 3.0 Virulence factor MVIN-like protein compare
Psyr_2151 +0.8 1.9 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_2067 +0.8 2.4 ABC transporter compare
Psyr_2527 +0.8 3.3 GCN5-related N-acetyltransferase compare
Psyr_1277 +0.8 1.5 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_3121 +0.8 1.6 Protein of unknown function DUF1345 compare
Psyr_2057 +0.8 2.8 acyl-CoA thioesterase II, putative compare
Psyr_0674 +0.8 2.2 Protein of unknown function UPF0029 compare
Psyr_2280 +0.8 3.5 Alkanesulfonate monooxygenase compare
Psyr_1946 +0.7 1.4 diaminobutyrate aminotransferase apoenzyme compare
Psyr_1968 +0.7 1.5 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0041 +0.7 1.9 Protein of unknown function DUF1161 compare
Psyr_2767 +0.7 2.3 Glycoside hydrolase, family 19 compare
Psyr_0014 +0.7 3.5 lipid A biosynthesis acyltransferase compare
Psyr_2399 +0.7 2.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4658 +0.7 1.7 CDS compare
Psyr_1972 +0.7 2.2 conserved hypothetical protein compare
Psyr_2014 +0.7 1.8 conserved hypothetical protein compare
Psyr_3507 +0.7 2.8 membrane protein, putative compare
Psyr_1067 +0.7 1.8 GTP cyclohydrolase subunit MoaC compare
Psyr_2112 +0.7 1.0 Protein with unknown function DUF469 compare
Psyr_2039 +0.7 1.3 Fimbrial protein compare
Psyr_2049 +0.6 1.4 K+ transporting ATPase, KdpC subunit compare
Psyr_2531 +0.6 2.5 transcriptional regulator, LysR family compare
Psyr_1614 +0.6 1.8 lipid A biosynthesis acyltransferase compare
Psyr_3143 +0.6 2.3 general secretion pathway protein M, putative compare
Psyr_3460 +0.6 2.1 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_3191 +0.6 2.1 Protein of unknown function DUF489 compare
Psyr_2765 +0.6 1.3 conserved domain protein compare
Psyr_1576 +0.6 2.6 Glutamine amidotransferase, class-II compare
Psyr_3445 +0.6 1.8 Flagellar biosynthesis protein, FliO compare
Psyr_4055 +0.6 1.4 conserved domain protein compare
Psyr_2879 +0.6 2.2 VirK compare
Psyr_3840 +0.6 2.1 conserved hypothetical protein compare
Psyr_3315 +0.6 1.7 conserved hypothetical protein compare
Psyr_4682 +0.6 1.7 conserved hypothetical protein compare
Psyr_0391 +0.6 1.6 Poly granule associated compare
Psyr_2921 +0.6 1.8 ADP-ribosylglycohydrolase compare
Psyr_4580 +0.6 0.9 anthranilate phosphoribosyltransferase compare
Psyr_3653 +0.6 2.3 GGDEF domain protein compare
Psyr_3545 +0.6 1.8 Short-chain dehydrogenase/reductase SDR compare
Psyr_1938 +0.6 2.2 Response regulator receiver compare
Psyr_1719 +0.6 1.2 conserved hypothetical protein compare
Psyr_2829 +0.5 1.7 conserved hypothetical protein compare
Psyr_0470 +0.5 2.3 conserved hypothetical protein compare
Psyr_0662 +0.5 2.9 2OG-Fe(II) oxygenase superfamily compare
Psyr_2398 +0.5 1.3 ABC transporter compare
Psyr_2053 +0.5 2.1 moxR protein, putative compare
Psyr_1424 +0.5 1.2 Peptidase S24, S26A and S26B compare
Psyr_4774 +0.5 1.1 Hypothetical protein compare
Psyr_4942 +0.5 2.1 HAD-superfamily hydrolase, subfamily IA, variant 3 compare
Psyr_1966 +0.5 2.1 Peptidase M19, renal dipeptidase compare
Psyr_1401 +0.5 2.8 Histidine triad (HIT) protein compare
Psyr_0858 +0.5 1.2 conserved hypothetical protein compare
Psyr_2774 +0.5 2.1 Bacteriophage lambda tail assembly I compare
Psyr_2537 +0.5 1.4 conserved hypothetical protein compare
Psyr_0478 +0.5 3.6 pilus retraction ATPase PilT compare
Psyr_1487 +0.5 1.6 conserved hypothetical protein compare
Psyr_2317 +0.5 2.0 CDS compare
Psyr_1895 +0.5 1.2 conserved hypothetical protein compare
Psyr_2578 +0.5 1.6 regulatory protein, LuxR compare
Psyr_4046 +0.5 2.9 conserved hypothetical protein compare
Psyr_2310 +0.5 1.5 lipoprotein, putative compare
Psyr_3555 +0.5 0.7 aspartate kinase compare
Psyr_1566 +0.5 2.8 Nitroreductase compare
Psyr_1264 +0.5 2.4 hypothetical protein compare
Psyr_1884 +0.5 2.4 CDS compare
Psyr_0787 +0.5 2.2 Sulfate transporter/antisigma-factor antagonist STAS compare
Psyr_2225 +0.5 1.4 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) compare
Psyr_0885 +0.5 1.1 conserved hypothetical protein compare
Psyr_4062 +0.5 1.1 Pyridoxamine 5'-phosphate oxidase-related protein compare
Psyr_0153 +0.5 1.4 conserved hypothetical protein compare
Psyr_2699 +0.5 2.2 conserved hypothetical protein compare
Psyr_1111 +0.5 1.3 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2546 +0.5 1.5 DMT superfamily multiple drug (quaternary ammonium compounds) efflux pump compare
Psyr_2984 +0.5 1.0 conserved hypothetical protein compare
Psyr_1992 +0.5 0.8 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_5078 +0.5 2.1 conserved hypothetical protein compare
Psyr_1123 +0.5 1.3 conserved hypothetical protein compare
Psyr_3837 +0.5 1.1 conserved hypothetical protein compare
Psyr_3020 +0.5 0.6 precorrin-4 C11-methyltransferase compare
Psyr_0838 +0.5 1.0 Rieske [2Fe-2S] region compare
Psyr_1850 +0.5 1.4 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase compare
Psyr_1953 +0.5 0.5 conserved hypothetical protein compare
Psyr_2519 +0.5 2.2 Aldo/keto reductase compare
Psyr_0909 +0.5 2.7 transcriptional regulator, LysR family compare
Psyr_4660 +0.5 1.9 Formate/nitrite transporter compare
Psyr_2942 +0.5 1.5 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_4336 +0.5 1.4 ribosomal large subunit pseudouridine synthase E compare
Psyr_3554 +0.4 0.7 Carbon storage regulator compare
Psyr_2226 +0.4 1.7 formyltetrahydrofolate deformylase compare
Psyr_2251 +0.4 0.6 Phosphonate metabolism PhnG compare
Psyr_2781 +0.4 1.5 hypothetical protein compare
Psyr_1871 +0.4 2.1 Transglutaminase-like protein compare
Psyr_3195 +0.4 1.6 NolW-like protein compare
Psyr_3934 +0.4 1.0 Short-chain dehydrogenase/reductase SDR compare
Psyr_2100 +0.4 2.2 assimilatory nitrate reductase (NADH) beta subunit compare
Psyr_2245 +0.4 1.0 conserved domain protein compare
Psyr_1807 +0.4 1.7 Allantoicase compare
Psyr_2262 +0.4 1.0 Peptidase M20:Peptidase M20 compare
Psyr_2270 +0.4 1.7 transferase hexapeptide repeat protein compare
Psyr_2443 +0.4 2.1 conserved domain protein compare
Psyr_2727 +0.4 1.9 vanillin dehydrogenase compare
Psyr_4811 +0.4 2.9 transcriptional regulator, AraC family compare
Psyr_2946 +0.4 2.4 4-oxalocrotonate tautomerase compare
Psyr_3348 +0.4 2.5 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_2160 +0.4 1.1 cold-shock DNA-binding protein family compare
Psyr_3785 +0.4 2.2 DSBA oxidoreductase compare
Psyr_1820 +0.4 2.0 conserved hypothetical protein compare
Psyr_2386 +0.4 0.7 hypothetical protein compare
Psyr_3618 +0.4 1.4 Catalytic LigB subunit of aromatic ring-opening dioxygenase compare
Psyr_2543 +0.4 0.9 conserved hypothetical protein compare
Psyr_2694 +0.4 0.7 conserved hypothetical protein compare
Psyr_2538 +0.4 1.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3692 +0.4 1.2 conserved hypothetical protein compare
Psyr_2469 +0.4 2.2 Propionyl-CoA carboxylase compare
Psyr_1004 +0.4 2.1 nucleoside ABC transporter membrane protein compare
Psyr_4736 +0.4 1.7 conserved hypothetical protein compare
Psyr_2786 +0.4 1.3 phage-related conserved hypothetical protein compare
Psyr_0690 +0.4 1.9 3-hydroxyisobutyrate dehydrogenase compare
Psyr_3319 +0.4 1.8 ThiJ/PfpI compare
Psyr_2521 +0.4 1.0 conserved hypothetical protein compare
Psyr_1872 +0.4 1.3 conserved hypothetical protein compare
Psyr_3142 +0.4 0.9 general secretion pathway protein N, putative compare
Psyr_4481 +0.4 1.3 outer membrane transport energization protein ExbB compare
Psyr_3783 +0.4 1.6 conserved hypothetical protein compare
Psyr_1733 +0.4 1.0 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_2468 +0.4 1.7 Enoyl-CoA hydratase/isomerase compare
Psyr_4465 +0.4 0.8 conserved domain protein compare
Psyr_3183 +0.4 2.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Psyr_4804 +0.4 1.4 conserved hypothetical protein compare
Psyr_2105 +0.4 1.6 conserved hypothetical protein compare
Psyr_4272 +0.4 2.2 Protein of unknown function DUF466 compare
Psyr_3594 +0.4 1.5 membrane protein-like protein compare
Psyr_2029 +0.4 1.3 Protein of unknown function UPF0118 compare
Psyr_2128 +0.4 0.9 Protein of unknown function DUF6 compare
Psyr_3162 +0.4 1.1 Metalloprotease inhibitor/calysin compare
Psyr_1970 +0.4 1.9 Secretion protein HlyD compare
Psyr_4845 +0.4 1.0 conserved hypothetical protein compare
Psyr_2796 +0.4 1.5 conserved hypothetical protein compare
Psyr_2418 +0.4 1.8 shikimate dehydrogenase compare
Psyr_1507 +0.4 1.5 hypothetical protein compare
Psyr_3790 +0.4 1.8 conserved hypothetical protein compare
Psyr_2273 +0.4 1.8 L-glutamine synthetase compare
Psyr_4831 +0.4 1.3 ABC transporter compare
Psyr_3981 +0.4 1.7 ribosomal small subunit pseudouridine synthase A compare
Psyr_2973 +0.4 1.0 Glyoxalase I compare
Psyr_4049 +0.4 2.1 lyso-ornithine lipid acyltransferase compare
Psyr_3354 +0.4 1.5 Ankyrin compare
Psyr_2835 +0.4 2.2 hypothetical protein compare
Psyr_2747 +0.4 1.2 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
Psyr_4788 +0.4 1.1 lipoprotein, putative compare
Psyr_2397 +0.4 1.2 transcriptional regulator, LysR family compare
Psyr_2522 +0.4 1.8 conserved hypothetical protein compare
Psyr_1137 +0.4 2.2 Protein of unknown function UPF0153 compare
Psyr_2330 +0.4 1.5 FAD dependent oxidoreductase compare
Psyr_2311 +0.4 1.7 conserved hypothetical protein compare
Psyr_0376 +0.4 0.9 D-tyrosyl-tRNA(Tyr) deacylase compare
Psyr_2749 +0.4 2.3 Methionine--tRNA ligase compare
Psyr_1984 +0.4 1.1 3-isopropylmalate dehydratase, small subunit compare
Psyr_3591 +0.4 1.5 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_2351 +0.4 1.7 tRNA synthetase, class-II (G, H, P and S) compare
Psyr_1868 +0.4 1.9 hypothetical protein compare
Psyr_1842 +0.4 2.3 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_0844 +0.4 1.5 Protein of unknown function DUF446 compare
Psyr_2324 +0.4 1.7 conserved hypothetical protein compare
Psyr_4466 +0.4 1.6 Thioredoxin compare
Psyr_2547 +0.4 2.1 Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 compare
Psyr_2370 +0.4 1.6 gluconolactonase compare
Psyr_1468 +0.4 1.8 hypothetical protein compare
Psyr_1235 +0.4 1.5 serine O-acetyltransferase compare
Psyr_2059 +0.4 1.3 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_2337 +0.4 1.2 conserved hypothetical protein compare
Psyr_1585 +0.4 2.2 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_2773 +0.4 2.2 hypothetical protein compare
Psyr_4673 +0.4 1.1 Coenzyme PQQ synthesis D compare
Psyr_0392 +0.4 1.8 hypothetical protein compare
Psyr_3820 +0.4 1.2 conserved domain protein compare
Psyr_2052 +0.4 2.0 lipoprotein, putative compare
Psyr_3131 +0.4 2.0 Secretion protein HlyD compare
Psyr_2150 +0.4 1.0 protein of unknown function DUF903 compare
Psyr_0276 +0.4 0.8 zinc uptake regulation protein, putative compare
Psyr_4943 +0.4 2.1 Peptidoglycan-binding LysM:Transport-associated compare
Psyr_1689 +0.4 1.1 conserved hypothetical protein compare
Psyr_3180 +0.4 1.6 Leucyl/phenylalanyl-tRNA--protein transferase compare
Psyr_0243 +0.4 2.1 cyclic nucleotide-binding protein compare
Psyr_3812 +0.4 1.2 CDS compare
Psyr_0904 +0.4 2.5 Short-chain dehydrogenase/reductase SDR compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Aristolochic Acid across organisms