Experiment set10IT018 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium malate (C) and Ammonium chloride (N); with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS01605 -5.3 -8.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20540 -5.2 -10.6 phosphoribosylanthranilate isomerase compare
PFLU_RS20565 -5.1 -16.0 3-isopropylmalate dehydrogenase compare
PFLU_RS01620 -5.0 -8.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20580 -4.9 -14.6 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27370 -4.9 -14.1 anthranilate phosphoribosyltransferase compare
PFLU_RS28385 -4.9 -16.2 homoserine O-acetyltransferase compare
PFLU_RS20575 -4.9 -8.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28695 -4.9 -9.9 phosphoglycerate dehydrogenase compare
PFLU_RS28535 -4.8 -18.6 dihydroxy-acid dehydratase compare
PFLU_RS02590 -4.8 -9.7 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS25640 -4.8 -15.0 ketol-acid reductoisomerase compare
PFLU_RS02490 -4.7 -13.2 phosphoserine phosphatase SerB compare
PFLU_RS20510 -4.7 -16.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28390 -4.6 -13.5 methionine biosynthesis protein MetW compare
PFLU_RS04470 -4.6 -13.7 histidinol dehydrogenase compare
PFLU_RS00180 -4.4 -8.0 tryptophan synthase subunit beta compare
PFLU_RS23065 -4.4 -11.7 phosphate acyltransferase PlsX compare
PFLU_RS01610 -4.4 -15.2 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS01900 -4.3 -10.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS24765 -4.2 -25.2 2-isopropylmalate synthase compare
PFLU_RS28165 -4.2 -13.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS27365 -4.2 -12.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS00175 -4.0 -11.3 tryptophan synthase subunit alpha compare
PFLU_RS04465 -4.0 -12.5 ATP phosphoribosyltransferase compare
PFLU_RS28655 -3.8 -17.6 HAD family hydrolase compare
PFLU_RS13540 -3.8 -6.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS20515 -3.7 -2.6 amidophosphoribosyltransferase compare
PFLU_RS12980 -3.7 -11.6 nitrite/sulfite reductase compare
PFLU_RS01895 -3.7 -8.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS25360 -3.6 -9.3 glutamate 5-kinase compare
PFLU_RS01625 -3.5 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS18505 -3.5 -13.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS09055 -3.5 -2.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS25755 -3.3 -4.0 pantoate--beta-alanine ligase compare
PFLU_RS22105 -3.1 -3.7 cysteine synthase CysM compare
PFLU_RS12975 -3.1 -6.6 DUF934 domain-containing protein compare
PFLU_RS04140 -3.0 -4.9 response regulator transcription factor compare
PFLU_RS23070 -3.0 -1.9 50S ribosomal protein L32 compare
PFLU_RS29515 -2.9 -13.7 RidA family protein compare
PFLU_RS24025 -2.9 -13.3 quinolinate synthase NadA compare
PFLU_RS08410 -2.8 -10.5 HTH-type transcriptional regulator CysB compare
PFLU_RS02565 -2.7 -8.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS03970 -2.7 -13.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS23310 -2.7 -12.8 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS22070 -2.6 -7.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS02365 -2.6 -14.3 glycosyltransferase compare
PFLU_RS19170 -2.5 -4.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS22740 -2.4 -5.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS02275 -2.4 -3.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS07665 -2.3 -3.0 type I DNA topoisomerase compare
PFLU_RS25595 -2.2 -3.8 exodeoxyribonuclease V subunit gamma compare
PFLU_RS23115 -2.2 -14.1 dicarboxylate/amino acid:cation symporter compare
PFLU_RS18530 -2.1 -5.9 DNA translocase FtsK compare
PFLU_RS22595 -2.1 -3.6 OmpA family protein compare
PFLU_RS05690 -2.0 -3.2 Grx4 family monothiol glutaredoxin compare
PFLU_RS25645 -1.9 -3.1 acetolactate synthase small subunit compare
PFLU_RS02455 -1.9 -3.6 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS13035 -1.9 -4.3 cobalamin biosynthesis protein CobW compare
PFLU_RS01400 -1.9 -11.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25875 -1.9 -5.4 transcription elongation factor GreA compare
PFLU_RS18395 -1.8 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS27440 -1.7 -7.2 nucleotidyltransferase family protein compare
PFLU_RS21995 -1.6 -3.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS24555 -1.6 -5.5 thioredoxin fold domain-containing protein compare
PFLU_RS28965 -1.5 -9.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS21985 -1.5 -4.8 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS03665 -1.5 -4.9 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS24090 -1.5 -4.5 Holliday junction branch migration protein RuvA compare
PFLU_RS30165 -1.5 -7.7 ParA family protein compare
PFLU_RS25585 -1.4 -2.8 exodeoxyribonuclease V subunit alpha compare
PFLU_RS23305 -1.4 -8.7 arginine N-succinyltransferase compare
PFLU_RS00415 -1.4 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS06055 -1.4 -1.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS04165 -1.3 -6.5 cell division protein ZapE compare
PFLU_RS22030 -1.3 -4.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS18885 -1.3 -2.7 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS19665 -1.3 -2.1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS02970 -1.3 -6.2 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS02975 -1.3 -6.5 precorrin-3B synthase compare
PFLU_RS29480 -1.3 -8.4 exodeoxyribonuclease III compare
PFLU_RS11980 -1.3 -4.7 precorrin-6A synthase (deacetylating) compare
PFLU_RS25740 -1.3 -5.6 polynucleotide adenylyltransferase PcnB compare
PFLU_RS00395 -1.3 -9.2 DNA polymerase I compare
PFLU_RS19165 -1.2 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS04075 -1.2 -2.0 hypothetical protein compare
PFLU_RS05655 -1.2 -4.4 DeoR/GlpR family transcriptional regulator compare
PFLU_RS08675 -1.2 -2.5 DsbE family thiol:disulfide interchange protein compare
PFLU_RS27475 -1.2 -6.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS02430 -1.1 -9.0 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS01995 -1.1 -9.0 malate dehydrogenase compare
PFLU_RS21240 -1.1 -1.9 hypothetical protein compare
PFLU_RS21315 -1.1 -6.3 GTP cyclohydrolase I FolE compare
PFLU_RS07255 -1.1 -2.9 sulfurtransferase TusA family protein compare
PFLU_RS13045 -1.1 -5.0 AAA domain-containing protein compare
PFLU_RS28645 -1.1 -7.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS13040 -1.1 -7.8 cobaltochelatase subunit CobN compare
PFLU_RS00435 -1.1 -8.2 PAS domain-containing protein compare
PFLU_RS17080 -1.1 -3.3 FadR family transcriptional regulator compare
PFLU_RS09305 -1.1 -7.8 hypothetical protein compare
PFLU_RS28420 -1.0 -5.6 thiazole synthase compare
PFLU_RS26735 -1.0 -5.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS25735 -1.0 -5.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS07695 -1.0 -2.6 beta-N-acetylhexosaminidase compare
PFLU_RS13015 -1.0 -4.0 precorrin-4 C(11)-methyltransferase compare
PFLU_RS22010 -1.0 -4.8 threonine-phosphate decarboxylase compare
PFLU_RS26530 -1.0 -7.5 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS21495 -1.0 -2.7 TlpA family protein disulfide reductase compare
PFLU_RS25220 -1.0 -5.4 ubiquinol oxidase subunit II compare
PFLU_RS01615 -1.0 -2.8 DUF2164 domain-containing protein compare
PFLU_RS08155 -1.0 -4.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS24125 -1.0 -4.5 cold-shock protein compare
PFLU_RS20405 -1.0 -4.6 carbon storage regulator CsrA compare
PFLU_RS08660 -1.0 -2.0 heme exporter protein CcmD compare
PFLU_RS02990 -1.0 -4.0 precorrin-3B C(17)-methyltransferase compare
PFLU_RS22015 -1.0 -6.8 cobalamin biosynthesis protein compare
PFLU_RS08655 -1.0 -2.5 heme ABC transporter permease compare
PFLU_RS03880 -1.0 -7.5 ATP-dependent chaperone ClpB compare
PFLU_RS02985 -1.0 -6.9 precorrin-2 C(20)-methyltransferase compare
PFLU_RS27380 -1.0 -5.7 anthranilate synthase component I compare
PFLU_RS23235 -1.0 -1.5 Arc family DNA-binding protein compare
PFLU_RS25200 -1.0 -5.5 protoheme IX farnesyltransferase compare
PFLU_RS27375 -1.0 -3.8 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS05880 -0.9 -3.7 CinA family protein compare
PFLU_RS21990 -0.9 -5.2 alpha-ribazole phosphatase family protein compare
PFLU_RS02965 -0.9 -6.1 cobalt-precorrin-6A reductase compare
PFLU_RS20715 -0.9 -2.2 iron ABC transporter permease compare
PFLU_RS05630 -0.9 -1.5 amino acid ABC transporter ATP-binding protein compare
PFLU_RS01320 -0.9 -5.6 phosphoenolpyruvate carboxykinase compare
PFLU_RS02050 -0.9 -7.4 NAD(P)-binding protein compare
PFLU_RS13050 -0.9 -4.7 VWA domain-containing protein compare
PFLU_RS13000 -0.9 -7.3 methionine synthase compare
PFLU_RS01955 -0.9 -4.4 DUF971 domain-containing protein compare
PFLU_RS30730 -0.9 -2.1 helix-turn-helix domain-containing protein compare
PFLU_RS01645 -0.9 -6.3 S41 family peptidase compare
PFLU_RS18645 -0.9 -2.1 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS29310 -0.9 -1.1 accessory factor UbiK family protein compare
PFLU_RS03770 -0.9 -6.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS31010 -0.9 -1.1 transposase compare
PFLU_RS23315 -0.9 -5.1 aspartate aminotransferase family protein compare
PFLU_RS30215 -0.9 -4.9 KTSC domain-containing protein compare
PFLU_RS22025 -0.9 -6.7 cobyrinate a,c-diamide synthase compare
PFLU_RS22005 -0.9 -5.6 cobyric acid synthase compare
PFLU_RS18615 -0.8 -2.3 NADH-quinone oxidoreductase subunit A compare
PFLU_RS24160 -0.8 -5.2 HAMP domain-containing protein compare
PFLU_RS02625 -0.8 -6.1 ribonuclease R compare
PFLU_RS30160 -0.8 -2.2 ParB/RepB/Spo0J family partition protein compare
PFLU_RS18675 -0.8 -2.9 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS25920 -0.8 -2.4 outer membrane protein assembly factor BamE compare
PFLU_RS15410 -0.8 -1.8 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS26535 -0.8 -4.3 thiamine phosphate synthase compare
PFLU_RS07225 -0.8 -6.5 L-aspartate oxidase compare
PFLU_RS25715 -0.8 -5.0 RNA polymerase-binding protein DksA compare
PFLU_RS06665 -0.8 -2.9 YkgJ family cysteine cluster protein compare
PFLU_RS13010 -0.8 -2.6 Fe-S biogenesis protein NfuA compare
PFLU_RS07275 -0.8 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS11850 -0.8 -1.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS10355 -0.8 -2.9 DeoR family transcriptional regulator compare
PFLU_RS03765 -0.8 -4.9 sulfate adenylyltransferase subunit CysD compare
PFLU_RS12800 -0.8 -1.0 amino acid ABC transporter ATP-binding protein compare
PFLU_RS04220 -0.8 -4.3 FadR family transcriptional regulator compare
PFLU_RS18655 -0.8 -2.5 NADH-quinone oxidoreductase subunit J compare
PFLU_RS28820 -0.8 -1.8 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS00065 -0.8 -4.3 lysophospholipid acyltransferase compare
PFLU_RS28320 -0.7 -2.2 glutathione synthase compare
PFLU_RS21740 -0.7 -4.2 Hpt domain-containing protein compare
PFLU_RS27305 -0.7 -3.5 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS23475 -0.7 -2.3 peptidase M4 compare
PFLU_RS04430 -0.7 -4.2 ATP-binding cassette domain-containing protein compare
PFLU_RS28665 -0.7 -6.1 threonine ammonia-lyase, biosynthetic compare
PFLU_RS14305 -0.7 -1.9 sensor histidine kinase compare
PFLU_RS31215 -0.7 -1.9 hypothetical protein compare
PFLU_RS24085 -0.7 -2.8 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS19550 -0.7 -1.0 ABC transporter ATP-binding protein compare
PFLU_RS01405 -0.7 -4.4 sensor histidine kinase compare
PFLU_RS13610 -0.7 -2.7 ABC transporter ATP-binding protein compare
PFLU_RS28325 -0.7 -3.7 energy transducer TonB compare
PFLU_RS29095 -0.7 -6.6 polyphosphate kinase 1 compare
PFLU_RS24560 -0.7 -4.3 site-specific tyrosine recombinase XerD compare
PFLU_RS13715 -0.7 -1.4 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS25800 -0.7 -4.2 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS10430 -0.7 -2.3 peptidase compare
PFLU_RS22000 -0.7 -3.5 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS24095 -0.7 -1.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS18640 -0.7 -2.6 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS02670 -0.7 -2.1 hypothetical protein compare
PFLU_RS30630 -0.7 -1.2 hypothetical protein compare
PFLU_RS24205 -0.7 -1.4 DNA binding protein compare
PFLU_RS09480 -0.7 -2.1 hypothetical protein compare
PFLU_RS25205 -0.7 -2.7 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS08535 -0.7 -5.0 response regulator compare
PFLU_RS25750 -0.7 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS18670 -0.7 -1.4 NADH-quinone oxidoreductase subunit M compare
PFLU_RS06320 -0.6 -1.5 OmpH family outer membrane protein compare
PFLU_RS31535 -0.6 -0.9 hypothetical protein compare
PFLU_RS26250 -0.6 -5.1 ferredoxin--NADP reductase compare
PFLU_RS25215 -0.6 -4.4 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS00245 -0.6 -3.7 YheV family putative metal-binding protein compare
PFLU_RS29340 -0.6 -3.7 bifunctional diguanylate cyclase/phosphodiesterase compare
PFLU_RS21570 -0.6 -1.6 exonuclease compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in no stress control experiments

For no stress control Sodium malate across organisms