Experiment set10IT018 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Varel_Bryant_medium_Glucose with Spiramycin 0.2 mM

200 most important genes:

  gene name fitness t score description  
BT2074 -3.8 -6.3 ketol-acid reductoisomerase (NCBI ptt file) compare
BT1377 -3.5 -3.4 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT1857 -3.5 -5.8 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT3918 -3.4 -4.0 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT3395 -3.4 -9.2 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT0892 -3.3 -2.2 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT3164 -3.3 -9.0 quinolinate synthetase A (NCBI ptt file) compare
BT3733 -3.3 -11.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT2403 -3.3 -9.1 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT2078 -3.2 -10.1 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT3759 -3.2 -10.7 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT3760 -3.2 -4.9 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT0528 -3.2 -2.2 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT2402 -3.2 -13.1 homoserine phosphotransferase HomK (from data) compare
BT3757 -3.2 -8.0 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT0532 -3.1 -3.7 anthranilate synthase component I (NCBI ptt file) compare
BT1379 -3.0 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT3758 -3.0 -2.9 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT1374 -3.0 -4.1 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT3933 -3.0 -6.0 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT3718 -3.0 -9.5 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT1860 -2.9 -4.8 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT3184 -2.9 -15.0 L-aspartate oxidase (NCBI ptt file) compare
BT1153 -2.9 -2.8 phosphoserine aminotransferase (NCBI ptt file) compare
BT3761 -2.9 -4.7 N-succinylglutamate synthase (from data) compare
BT0201 -2.8 -1.9 histidinol dehydrogenase (NCBI ptt file) compare
BT1983 -2.8 -9.5 hemolysin III (NCBI ptt file) compare
BT1843 -2.8 -4.3 adenylosuccinate synthetase (NCBI ptt file) compare
BT0530 -2.8 -3.3 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT3193 -2.8 -14.2 putative coenzyme A transferase (NCBI ptt file) compare
BT1607 -2.8 -1.9 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT2415 -2.8 -12.2 aspartate aminotransferase (NCBI ptt file) compare
BT2401 -2.8 -8.8 threonine synthase (NCBI ptt file) compare
BT1859 -2.8 -2.6 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT1861 -2.7 -6.3 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT3719 -2.7 -4.4 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT2836 -2.6 -15.8 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT3361 -2.6 -5.5 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT0758 -2.6 -2.4 acetyltransferase (NCBI ptt file) compare
BT0891 -2.6 -1.7 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT0738 -2.6 -2.5 serine hydroxymethyltransferase (NCBI ptt file) compare
BT1858 -2.5 -5.3 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT2837 -2.5 -13.2 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT3253 -2.5 -2.4 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT3717 -2.5 -4.1 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT0202 -2.5 -3.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT0876 -2.5 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT2077 -2.5 -4.7 acetolactate synthase large subunit (NCBI ptt file) compare
BT1844 -2.4 -3.9 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT0200 -2.3 -3.1 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT3549 -2.3 -6.9 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT3320 -2.3 -6.2 dihydrodipicolinate reductase (NCBI ptt file) compare
BT1381 -2.3 -3.8 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT3980 -2.3 -2.1 hypothetical protein (NCBI ptt file) compare
BT1733 -2.2 -2.2 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT2418 -2.1 -3.7 hypothetical protein (NCBI ptt file) compare
BT2076 -2.1 -6.1 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT0527 -2.1 -3.4 tryptophan synthase alpha chain (NCBI ptt file) compare
BT0241 -2.1 -1.4 hypothetical protein (NCBI ptt file) compare
BT1270 -2.1 -4.1 putative Na+/H+ antiporter (NCBI ptt file) compare
BT0529 -2.1 -1.4 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT0700 -2.0 -4.9 GTP pyrophosphokinase (NCBI ptt file) compare
BT4211 -2.0 -1.4 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT1476 -2.0 -3.7 aspartate aminotransferase (NCBI ptt file) compare
BT0771 -2.0 -4.1 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT0545 -1.9 -2.2 nitrogen regulatory protein P-II (NCBI ptt file) compare
BT2417 -1.9 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT1970 -1.8 -8.5 glutamate dehydrogenase (NCBI ptt file) compare
BT0531 -1.8 -2.4 anthranilate synthase component II (NCBI ptt file) compare
BT0777 -1.8 -1.7 hypothetical protein (NCBI ptt file) compare
BT0395 -1.8 -1.7 hypothetical protein (NCBI ptt file) compare
BT1378 -1.8 -2.6 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT4562 -1.7 -1.1 hypothetical protein (NCBI ptt file) compare
BT2080 -1.7 -2.8 L-cysteine desulfidase cdsB (from data) compare
BT1375 -1.6 -8.0 aspartokinase (NCBI ptt file) compare
BT2173 -1.6 -6.2 hypothetical protein (NCBI ptt file) compare
BT4339 -1.6 -2.3 glutamine synthetase (NCBI ptt file) compare
BT0827 -1.6 -3.1 hypothetical protein (NCBI ptt file) compare
BT1152 -1.6 -1.1 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT1220 -1.6 -2.2 6-phosphogluconolactonase (NCBI ptt file) compare
BT3268 -1.5 -1.4 glucose-inhibited division protein A (NCBI ptt file) compare
BT3035 -1.5 -8.5 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT4644 -1.5 -2.5 putative anti-sigma factor (NCBI ptt file) compare
BT3220 -1.5 -7.6 TPR-repeat-containing protein (NCBI ptt file) compare
BT4685 -1.5 -2.4 hypothetical protein (NCBI ptt file) compare
BT0533 -1.5 -1.7 tryptophan synthase beta chain (NCBI ptt file) compare
BT0783 -1.5 -1.3 hypothetical protein (NCBI ptt file) compare
BT0157 -1.4 -2.4 hypothetical protein (NCBI ptt file) compare
BT4421 -1.4 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT0739 -1.4 -2.0 hypothetical protein (NCBI ptt file) compare
BT1055 -1.4 -1.8 pyruvate formate-lyase activating enzyme (NCBI ptt file) compare
BT1419 -1.4 -2.2 hypothetical protein (NCBI ptt file) compare
BT4778 -1.4 -3.1 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2129 -1.4 -5.2 aspartate--ammonia ligase (NCBI ptt file) compare
BT2003 -1.4 -1.5 putative membrane peptidase (NCBI ptt file) compare
BT3936 -1.4 -1.5 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT3373 -1.4 -3.2 spermidine n1-acetyltransferase (NCBI ptt file) compare
BT0965 -1.4 -1.8 putative anti-sigma factor (NCBI ptt file) compare
BT4699 -1.4 -2.4 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT0593 -1.3 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT3371 -1.3 -2.9 putative glycosyltransferase yibD (NCBI ptt file) compare
BT2172 -1.3 -7.5 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT2153 -1.3 -2.2 putative Fe-S oxidoreductases (NCBI ptt file) compare
BT3074 -1.3 -4.7 conserved hypothetical protein (NCBI ptt file) compare
BT3554 -1.3 -3.2 conserved hypothetical protein (NCBI ptt file) compare
BT3394 -1.3 -5.9 putative arginine decarboxylase (NCBI ptt file) compare
BT0885 -1.3 -1.4 putative cation efflux pump (NCBI ptt file) compare
BT1309 -1.3 -2.3 hypothetical protein (NCBI ptt file) compare
BT0740 -1.3 -0.8 flavoredoxin (NCBI ptt file) compare
BT3224 -1.3 -2.9 putative lysine decarboxylase (NCBI ptt file) compare
BT2546 -1.3 -6.2 transcriptional regulator (NCBI ptt file) compare
BT2843 -1.3 -3.3 integrase (NCBI ptt file) compare
BT4018 -1.3 -2.0 hypothetical protein (NCBI ptt file) compare
BT0409 -1.3 -2.4 putative short-chain dehydrogenase (NCBI ptt file) compare
BT4569 -1.3 -2.3 hypothetical protein (NCBI ptt file) compare
BT4191 -1.3 -6.8 hypothetical protein (NCBI ptt file) compare
BT0519 -1.2 -2.3 hypothetical protein (NCBI ptt file) compare
BT3935 -1.2 -2.9 aminotransferase (NCBI ptt file) compare
BT1608 -1.2 -4.5 capsule biosynthesis protein capA (NCBI ptt file) compare
BT1262 -1.2 -1.1 putative transcriptional regulator (NCBI ptt file) compare
BT0697 -1.2 -1.7 putative phosphatase/phosphohexomutase (NCBI ptt file) compare
BT1559 -1.2 -3.7 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1127 -1.2 -1.6 mobilization protein BmgB (NCBI ptt file) compare
BT1115 -1.2 -2.3 aldo/keto reductase (NCBI ptt file) compare
BT4002 -1.2 -1.5 ATPase, ParA family (NCBI ptt file) compare
BT1972 -1.2 -6.9 phosphoenolpyruvate synthase/pyruvate phosphate dikinase (NCBI ptt file) compare
BT0418 -1.2 -1.4 outer membrane porin F precursor (NCBI ptt file) compare
p5482_02 -1.2 -4.2 hypothetical protein (NCBI) compare
BT1336 -1.1 -2.7 putative translation initiation inhibitor (NCBI ptt file) compare
BT0702 -1.1 -2.1 chloramphenicol acetyltransferase (CAT-III) (NCBI ptt file) compare
BT3762 -1.1 -3.2 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT3072 -1.1 -4.5 collagenase precursor (NCBI ptt file) compare
BT1341 -1.1 -3.1 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
BT0951 -1.1 -3.6 hypothetical protein (NCBI ptt file) compare
BT0897 -1.1 -3.9 chaperone protein htpG (heat shock protein htpG) (NCBI ptt file) compare
BT1380 -1.1 -1.2 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT0651 -1.1 -2.0 thiamine biosynthesis protein ThiG (NCBI ptt file) compare
BT0848 -1.1 -2.0 hypothetical protein (NCBI ptt file) compare
BT0602 -1.1 -2.9 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI ptt file) compare
BT1746 -1.1 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1984 -1.1 -2.2 transcriptional regulator (NCBI ptt file) compare
BT4730 -1.1 -2.2 hypothetical protein (NCBI ptt file) compare
BT0912 -1.1 -1.1 DNA-binding protein HU (NCBI ptt file) compare
BT3979 -1.1 -2.1 putative methyltransferase (NCBI ptt file) compare
BT2490 -1.1 -1.4 hypothetical protein (NCBI ptt file) compare
BT2845 -1.1 -4.4 conserved hypothetical protein (NCBI ptt file) compare
BT4601 -1.1 -2.5 hypothetical protein (NCBI ptt file) compare
BT0356 -1.0 -2.0 aldose 1-epimerase precursor (NCBI ptt file) compare
BT1221 -1.0 -2.7 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT0736 -1.0 -2.0 putative transport protein (NCBI ptt file) compare
BT3372 -1.0 -3.6 glycosyltransferase (NCBI ptt file) compare
BT3801 -1.0 -2.1 rteB, two-component system response regulator (NCBI ptt file) compare
BT3712 -1.0 -2.1 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) compare
BT1569 -1.0 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT1516 -1.0 -1.8 replicative DNA helicase (NCBI ptt file) compare
BT0638 -1.0 -3.6 putative methionine aminopeptidase A (NCBI ptt file) compare
BT0215 -1.0 -1.4 iron uptake regulatory protein (NCBI ptt file) compare
BT3805 -1.0 -2.1 two-component system sensor histidine kinase (NCBI ptt file) compare
BT3783 -1.0 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT1723 -1.0 -3.3 polysialic acid transport protein kpsD precursor (NCBI ptt file) compare
BT1168 -1.0 -1.3 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT1621 -0.9 -4.2 beta-hexosaminidase precursor (NCBI ptt file) compare
BT0342 -0.9 -3.3 conserved hypothetical protein (NCBI ptt file) compare
BT4349 -0.9 -2.2 hypothetical protein (NCBI ptt file) compare
BT4487 -0.9 -2.6 putative membrane-bound lytic murein transglycosylase (NCBI ptt file) compare
BT_2008 -0.9 -1.7 hypothetical protein (RefSeq) compare
BT4237 -0.9 -2.8 tRNA pseudouridine synthase A (NCBI ptt file) compare
BT3286 -0.9 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT2157 -0.9 -2.5 3-keto-alpha-glucoside 1,2-lyase; 3-ketoglucose dehydratase (from data) compare
BT4027 -0.9 -1.3 hypothetical protein (NCBI ptt file) compare
BT1355 -0.9 -3.8 hypothetical protein (NCBI ptt file) compare
BT1718 -0.9 -4.1 putative 2-aminoethylphosphonate pyruvate aminotransferase (NCBI ptt file) compare
BT2155 -0.9 -3.1 hypothetical protein (NCBI ptt file) compare
BT1193 -0.9 -2.6 conserved hypothetical protein (NCBI ptt file) compare
BT1126 -0.9 -1.9 mobilization protein BmgA (NCBI ptt file) compare
BT0793 -0.9 -1.8 xylose isomerase (NCBI ptt file) compare
BT1214 -0.9 -1.8 putative ABC transporter ATP-binding protein (NCBI ptt file) compare
BT1921 -0.9 -2.6 hypothetical protein (NCBI ptt file) compare
BT0616 -0.9 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT3370 -0.9 -1.0 putative glycosyltransferase yibD (NCBI ptt file) compare
BT1256 -0.9 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1834 -0.9 -3.0 putative hydrogenase (NCBI ptt file) compare
BT1363 -0.9 -1.0 DNA Pol III Epsilon Chain (NCBI ptt file) compare
BT4571 -0.9 -1.4 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT3142 -0.9 -2.7 mobilization protein BmgB (NCBI ptt file) compare
BT1346 -0.9 -2.4 capsule biosynthesis protein capA (NCBI ptt file) compare
BT4590 -0.9 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT2122 -0.9 -0.9 lysyl-tRNA synthetase (NCBI ptt file) compare
BT1330 -0.9 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT0882 -0.9 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT2389 -0.9 -1.2 putative transport protein (NCBI ptt file) compare
BT0603 -0.9 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT4413 -0.9 -2.8 hypothetical protein (NCBI ptt file) compare
BT1421 -0.9 -1.4 hypothetical protein (NCBI ptt file) compare
BT1701 -0.9 -1.3 hypothetical protein (NCBI ptt file) compare
BT4561 -0.9 -2.7 conserved hypothetical protein, putative integral membrane protein (NCBI ptt file) compare
BT1981 -0.9 -2.0 hypothetical protein (NCBI ptt file) compare
BT0813 -0.8 -3.1 TonB (NCBI ptt file) compare
BT0843 -0.8 -2.0 hypothetical protein (NCBI ptt file) compare
BT0922 -0.8 -2.3 hypothetical protein (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Bacteroides thetaiotaomicron VPI-5482 in stress experiments

For stress Spiramycin across organisms