Experiment set10IT015 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium malate (C) and Ammonium chloride (N); with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS01405 +4.6 16.2 sensor histidine kinase compare
PFLU_RS07935 +2.8 9.1 type 1 fimbrial protein compare
PFLU_RS24015 +1.7 7.9 cold-shock protein compare
PFLU_RS28320 +1.6 7.7 glutathione synthase compare
PFLU_RS05620 +1.6 11.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS07930 +1.5 10.4 molecular chaperone compare
PFLU_RS25730 +1.5 14.0 PAS domain S-box protein compare
PFLU_RS22105 +1.3 5.7 cysteine synthase CysM compare
PFLU_RS21795 +1.3 12.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS08380 +1.3 9.5 3-deoxy-7-phosphoheptulonate synthase compare
PFLU_RS18555 +1.2 9.0 ATP-dependent Clp protease adapter ClpS compare
PFLU_RS21665 +1.2 7.2 MinD/ParA family protein compare
PFLU_RS29505 +1.2 6.4 DNA-directed RNA polymerase subunit omega compare
PFLU_RS29555 +1.1 9.1 HDOD domain-containing protein compare
PFLU_RS21780 +1.1 5.1 flagellar hook-basal body complex protein FliE compare
PFLU_RS21700 +1.1 7.0 flagellar type III secretion system protein FliR compare
PFLU_RS18055 +1.1 2.0 hydrolase compare
PFLU_RS18725 +1.1 2.7 alpha/beta hydrolase compare
PFLU_RS21770 +1.0 7.0 flagellar motor switch protein FliG compare
PFLU_RS14300 +1.0 2.5 response regulator transcription factor compare
PFLU_RS21735 +1.0 8.9 flagellar hook-length control protein FliK compare
PFLU_RS21755 +1.0 7.6 flagella biosynthesis chaperone FliJ compare
PFLU_RS21855 +1.0 8.0 flagellar basal-body rod protein FlgG compare
PFLU_RS30900 +1.0 3.3 hypothetical protein compare
PFLU_RS14715 +1.0 6.2 protein-glutamate O-methyltransferase CheR compare
PFLU_RS21675 +1.0 8.6 flagellar biosynthesis protein FlhA compare
PFLU_RS22835 +1.0 7.0 amidotransferase compare
PFLU_RS03995 +1.0 2.3 hypothetical protein compare
PFLU_RS21845 +1.0 6.7 flagellar basal body P-ring protein FlgI compare
PFLU_RS13120 +1.0 1.9 hypothetical protein compare
PFLU_RS21710 +1.0 6.0 flagellar type III secretion system pore protein FliP compare
PFLU_RS21705 +0.9 6.8 flagellar biosynthesis protein FliQ compare
PFLU_RS23165 +0.9 8.7 flagellar hook protein FlgE compare
PFLU_RS20015 +0.9 2.7 transporter compare
PFLU_RS21765 +0.9 6.3 flagellar assembly protein FliH compare
PFLU_RS23205 +0.9 7.4 flagellar protein FlgN compare
PFLU_RS28785 +0.9 7.3 glutamine synthetase compare
PFLU_RS23175 +0.9 5.9 flagellar basal body rod protein FlgC compare
PFLU_RS21760 +0.9 7.6 flagellar protein export ATPase FliI compare
PFLU_RS25750 +0.9 5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS04140 +0.9 3.7 response regulator transcription factor compare
PFLU_RS28295 +0.9 7.8 response regulator compare
PFLU_RS23180 +0.9 6.4 flagellar basal body rod protein FlgB compare
PFLU_RS21850 +0.9 7.4 flagellar basal body L-ring protein FlgH compare
PFLU_RS24125 +0.9 4.9 cold-shock protein compare
PFLU_RS21805 +0.9 7.0 flagellar export chaperone FliS compare
PFLU_RS29885 +0.8 6.6 LysR family transcriptional regulator compare
PFLU_RS23045 +0.8 5.6 beta-ketoacyl-ACP synthase II compare
PFLU_RS21725 +0.8 6.6 flagellar motor switch protein FliM compare
PFLU_RS20970 +0.8 1.6 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS21825 +0.8 6.3 ketoacyl-ACP synthase III compare
PFLU_RS23195 +0.8 7.2 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS14805 +0.8 1.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS23830 +0.8 6.7 TrkH family potassium uptake protein compare
PFLU_RS21775 +0.8 6.5 flagellar basal body M-ring protein FliF compare
PFLU_RS21810 +0.8 7.6 flagellar filament capping protein FliD compare
PFLU_RS21860 +0.8 4.5 flagellar basal body rod protein FlgF compare
PFLU_RS22320 +0.8 7.2 cytochrome-c oxidase, cbb3-type subunit I compare
PFLU_RS09065 +0.8 5.1 phosphohistidine phosphatase SixA compare
PFLU_RS21660 +0.8 6.5 RNA polymerase sigma factor FliA compare
PFLU_RS21835 +0.8 7.1 flagellar hook-associated protein FlgK compare
PFLU_RS18550 +0.8 6.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS04455 +0.8 4.3 BolA family transcriptional regulator compare
PFLU_RS21695 +0.8 5.4 flagellar biosynthesis protein FlhB compare
PFLU_RS21830 +0.8 7.3 flagellar hook-associated protein 3 compare
PFLU_RS24475 +0.8 7.1 AmpG family muropeptide MFS transporter compare
PFLU_RS22630 +0.8 7.0 phosphoenolpyruvate synthase compare
PFLU_RS27445 +0.8 6.7 phosphotransferase compare
PFLU_RS08760 +0.8 3.3 phosphonate C-P lyase system protein PhnG compare
PFLU_RS29880 +0.8 6.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS22335 +0.8 5.5 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS28290 +0.7 5.4 chemotaxis protein CheW compare
PFLU_RS28300 +0.7 4.1 chemotaxis protein compare
PFLU_RS21820 +0.7 6.2 flagellin compare
PFLU_RS31010 +0.7 2.0 transposase compare
PFLU_RS16310 +0.7 2.1 hypothetical protein compare
PFLU_RS21840 +0.7 5.5 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS02645 +0.7 4.6 hypothetical protein compare
PFLU_RS28415 +0.7 5.0 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
PFLU_RS01685 +0.7 3.1 nitrogen regulation protein NR(I) compare
PFLU_RS20790 +0.7 2.1 heme-binding protein compare
PFLU_RS24280 +0.7 3.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS09720 +0.7 1.6 single-stranded DNA-binding protein compare
PFLU_RS07695 +0.7 2.6 beta-N-acetylhexosaminidase compare
PFLU_RS11770 +0.7 3.0 type 1 glutamine amidotransferase domain-containing protein compare
PFLU_RS03025 +0.7 4.2 tRNA dihydrouridine synthase DusB compare
PFLU_RS22325 +0.7 4.9 cytochrome-c oxidase, cbb3-type subunit II compare
PFLU_RS24020 +0.7 3.5 RDD family protein compare
PFLU_RS06055 +0.7 0.9 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS00075 +0.7 5.4 Trk system potassium transporter TrkA compare
PFLU_RS24160 +0.7 4.8 HAMP domain-containing protein compare
PFLU_RS19420 +0.7 3.6 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS00235 +0.7 4.1 gamma carbonic anhydrase family protein compare
PFLU_RS02825 +0.7 2.0 phosphate starvation-inducible protein PsiF compare
PFLU_RS01930 +0.7 4.1 phasin family protein compare
PFLU_RS28735 +0.6 3.8 thiol-disulfide isomerase compare
PFLU_RS11505 +0.6 1.9 ABC transporter substrate-binding protein compare
PFLU_RS04780 +0.6 2.0 hypothetical protein compare
PFLU_RS01005 +0.6 1.4 ABC transporter ATP-binding protein compare
PFLU_RS28665 +0.6 5.5 threonine ammonia-lyase, biosynthetic compare
PFLU_RS21730 +0.6 4.5 flagellar basal body-associated protein FliL compare
PFLU_RS05720 +0.6 4.9 OmpA family protein compare
PFLU_RS14555 +0.6 4.2 glutathione-disulfide reductase compare
PFLU_RS01380 +0.6 3.3 GMP/IMP nucleotidase compare
PFLU_RS28310 +0.6 1.3 response regulator compare
PFLU_RS26950 +0.6 4.7 outer membrane beta-barrel protein compare
PFLU_RS14680 +0.6 2.2 cbb3-type cytochrome c oxidase subunit 3 compare
PFLU_RS14775 +0.6 2.2 enoyl-CoA hydratase compare
PFLU_RS14000 +0.6 2.1 hypothetical protein compare
PFLU_RS29875 +0.6 5.2 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS23170 +0.6 4.1 flagellar hook assembly protein FlgD compare
PFLU_RS08735 +0.6 1.5 histidine phosphatase family protein compare
PFLU_RS22875 +0.6 2.7 hypothetical protein compare
PFLU_RS14820 +0.6 2.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS06855 +0.6 1.5 helix-turn-helix transcriptional regulator compare
PFLU_RS03830 +0.6 2.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS01315 +0.6 2.0 Hsp33 family molecular chaperone HslO compare
PFLU_RS26905 +0.6 3.8 transcriptional regulator NrdR compare
PFLU_RS12650 +0.6 2.1 hypothetical protein compare
PFLU_RS02955 +0.6 2.1 DUF2946 domain-containing protein compare
PFLU_RS02860 +0.6 1.1 urease subunit beta compare
PFLU_RS08990 +0.6 1.6 hypothetical protein compare
PFLU_RS18595 +0.6 2.1 cupin domain-containing protein compare
PFLU_RS30365 +0.6 2.9 hypothetical protein compare
PFLU_RS14800 +0.6 4.8 UDP-glucose/GDP-mannose dehydrogenase family protein compare
PFLU_RS16250 +0.6 2.8 hypothetical protein compare
PFLU_RS04085 +0.6 4.2 ABC transporter ATP-binding protein compare
PFLU_RS25025 +0.6 1.6 hypothetical protein compare
PFLU_RS24700 +0.6 4.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS00410 +0.6 4.3 cytochrome c4 compare
PFLU_RS21800 +0.6 3.9 flagellar assembly protein FliT compare
PFLU_RS23260 +0.6 3.7 carbon storage regulator CsrA compare
PFLU_RS10340 +0.5 1.5 hypothetical protein compare
PFLU_RS18585 +0.5 0.9 high frequency lysogenization protein HflD compare
PFLU_RS14815 +0.5 4.0 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
PFLU_RS18975 +0.5 4.0 gamma-carboxygeranoyl-CoA hydratase compare
PFLU_RS21300 +0.5 3.2 cysteine hydrolase compare
PFLU_RS06205 +0.5 2.2 cold-shock protein compare
PFLU_RS13315 +0.5 2.0 class I SAM-dependent methyltransferase compare
PFLU_RS10595 +0.5 2.3 hypothetical protein compare
PFLU_RS27305 +0.5 3.5 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS08775 +0.5 3.3 alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ compare
PFLU_RS14335 +0.5 1.3 ABC transporter permease compare
PFLU_RS16785 +0.5 1.5 GAF domain-containing protein compare
PFLU_RS22365 +0.5 2.9 membrane protein compare
PFLU_RS04215 +0.5 4.0 ClpXP protease specificity-enhancing factor compare
PFLU_RS28660 +0.5 3.1 DUF2269 family protein compare
PFLU_RS08785 +0.5 3.2 phosphonate C-P lyase system protein PhnL compare
PFLU_RS25670 +0.5 4.6 bifunctional aminoglycoside phosphotransferase/ATP-binding protein compare
PFLU_RS04055 +0.5 4.2 ABC transporter permease compare
PFLU_RS24695 +0.5 1.2 PTS glucose transporter subunit IIB compare
PFLU_RS24330 +0.5 3.6 phosphogluconate dehydratase compare
PFLU_RS13950 +0.5 1.3 hypothetical protein compare
PFLU_RS03400 +0.5 1.0 hypothetical protein compare
PFLU_RS11790 +0.5 2.2 zinc-binding dehydrogenase compare
PFLU_RS00405 +0.5 2.8 cytochrome c5 family protein compare
PFLU_RS19935 +0.5 0.8 type II secretion system protein GspF compare
PFLU_RS02950 +0.5 3.4 copper chaperone PCu(A)C compare
PFLU_RS04050 +0.5 3.7 ABC transporter ATP-binding protein compare
PFLU_RS18955 +0.5 3.9 hydroxymethylglutaryl-CoA lyase compare
PFLU_RS01875 +0.5 1.1 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS30865 +0.5 1.9 transposase compare
PFLU_RS21240 +0.5 0.7 hypothetical protein compare
PFLU_RS29090 +0.5 3.1 exopolyphosphatase compare
PFLU_RS13765 +0.5 1.2 hypothetical protein compare
PFLU_RS17895 +0.5 3.0 glycosyltransferase family 2 protein compare
PFLU_RS08860 +0.5 1.7 2-hydroxy-3-oxopropionate reductase compare
PFLU_RS28470 +0.5 2.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS23130 +0.5 2.7 response regulator transcription factor compare
PFLU_RS28305 +0.5 3.2 purine-binding chemotaxis protein CheW compare
PFLU_RS20025 +0.5 1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS05225 +0.5 2.2 hypothetical protein compare
PFLU_RS24675 +0.5 3.1 protein killer suppression protein compare
PFLU_RS04095 +0.5 3.6 ABC transporter permease subunit compare
PFLU_RS30390 +0.5 2.0 type III secretion system rspB compare
PFLU_RS07480 +0.5 1.6 nitroreductase family protein compare
PFLU_RS31535 +0.5 1.5 hypothetical protein compare
PFLU_RS14830 +0.5 2.8 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PFLU_RS20345 +0.5 1.4 hypothetical protein compare
PFLU_RS03980 +0.5 3.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS25035 +0.5 2.4 PH domain-containing protein compare
PFLU_RS10995 +0.5 2.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS27420 +0.5 1.6 response regulator transcription factor compare
PFLU_RS14250 +0.5 2.1 MFS transporter compare
PFLU_RS29420 +0.5 4.1 aldehyde dehydrogenase compare
PFLU_RS10660 +0.5 1.7 DUF1652 domain-containing protein compare
PFLU_RS20960 +0.5 1.8 hypothetical protein compare
PFLU_RS13750 +0.5 1.0 hypothetical protein compare
PFLU_RS09060 +0.5 2.4 DUF4389 domain-containing protein compare
PFLU_RS12445 +0.5 3.7 TonB-dependent siderophore receptor compare
PFLU_RS23095 +0.5 3.2 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
PFLU_RS04060 +0.5 3.8 glycine betaine ABC transporter substrate-binding protein compare
PFLU_RS18075 +0.5 2.1 LysR family transcriptional regulator compare
PFLU_RS21610 +0.5 2.9 DUF2802 domain-containing protein compare
PFLU_RS26490 +0.4 1.1 cation diffusion facilitator family transporter compare
PFLU_RS07810 +0.4 3.9 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS25865 +0.4 2.0 YhbY family RNA-binding protein compare
PFLU_RS23725 +0.4 3.5 glucose-6-phosphate dehydrogenase compare
PFLU_RS19475 +0.4 1.7 Zn-dependent hydrolase compare
PFLU_RS17950 +0.4 0.9 hypothetical protein compare


Specific Phenotypes

For 14 genes in this experiment

For stress Sodium malate in Pseudomonas fluorescens SBW25-INTG

For stress Sodium malate across organisms