Experiment set10IT015 for Bifidobacterium breve UCC2003
diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2
Group: mouseMedia: + diet=HighFatHighSugar; sample=FecalPellet
Culturing: Bifido_ML2
By: Anthony Shiver on 9/1/2020
Specific Phenotypes
For 6 genes in this experiment
For mouse diet=HighFatHighSugar; sample=FecalPellet in Bifidobacterium breve UCC2003
For mouse diet=HighFatHighSugar; sample=FecalPellet across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| NAD and NADP cofactor biosynthesis global | 1 |
| NAD regulation | 1 |
| Purine Utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Alanine and aspartate metabolism
- Nicotinate and nicotinamide metabolism
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| NAD de novo biosynthesis I | 6 | 6 | 1 |
| nicotine biosynthesis | 9 | 3 | 1 |
| superpathway of nicotine biosynthesis | 12 | 4 | 1 |
| aspartate superpathway | 25 | 23 | 1 |