Experiment set10IT008 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_3985 -2.7 -3.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_2021 -2.3 -2.6 hypothetical protein compare
Pf1N1B4_1126 -2.1 -3.1 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_4835 -2.0 -2.8 Carbon starvation protein A compare
Pf1N1B4_3547 -1.8 -2.6 DNA-binding response regulator compare
Pf1N1B4_3858 -1.8 -4.6 FIG00954563: hypothetical protein compare
Pf1N1B4_2105 -1.8 -2.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2102 -1.8 -2.3 hypothetical protein compare
Pf1N1B4_606 -1.7 -2.3 Iron siderophore sensor protein compare
Pf1N1B4_4355 -1.6 -2.5 Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-) compare
Pf1N1B4_4299 -1.5 -3.6 sensor histidine kinase compare
Pf1N1B4_1472 -1.5 -1.1 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_115 -1.4 -2.4 Membrane protein mosC compare
Pf1N1B4_1837 -1.4 -1.7 Osmotically inducible protein C compare
Pf1N1B4_5720 -1.4 -2.6 hypothetical protein compare
Pf1N1B4_4678 -1.3 -4.6 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_4485 -1.3 -1.9 membrane protein, putative compare
Pf1N1B4_1408 -1.3 -3.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2792 -1.3 -3.4 FIG00953454: hypothetical protein compare
Pf1N1B4_2026 -1.3 -2.6 Transcriptional regulator compare
Pf1N1B4_724 -1.3 -3.3 DNA-binding response regulator ColR compare
Pf1N1B4_419 -1.3 -2.3 Transcriptional regulator, TetR family compare
Pf1N1B4_5302 -1.3 -2.8 hypothetical protein compare
Pf1N1B4_1691 -1.2 -1.4 hypothetical protein compare
Pf1N1B4_5666 -1.2 -2.3 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2150 -1.2 -2.3 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_1463 -1.2 -5.5 hypothetical protein compare
Pf1N1B4_823 -1.2 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_122 -1.2 -3.5 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_5031 -1.2 -3.5 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_237 -1.2 -3.1 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_5745 -1.2 -2.3 FIG139928: Putative protease compare
Pf1N1B4_2360 -1.2 -2.1 hypothetical protein compare
Pf1N1B4_5756 -1.1 -3.5 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf1N1B4_4974 -1.1 -2.6 Protease subunit of ATP-dependent Clp proteases compare
Pf1N1B4_1107 -1.1 -2.8 D-galactarate dehydratase (EC 4.2.1.42) compare
Pf1N1B4_2534 -1.1 -1.9 DnaJ-like protein DjlA compare
Pf1N1B4_2005 -1.1 -1.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_619 -1.1 -1.9 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_2739 -1.1 -2.1 acetyltransferase, GNAT family compare
Pf1N1B4_3525 -1.1 -1.9 hydrolase, alpha/beta fold family compare
Pf1N1B4_2415 -1.1 -3.5 TldD family protein, Beta/Gamma-proteobacterial subgroup compare
Pf1N1B4_1806 -1.1 -2.3 FIG00953743: hypothetical protein compare
Pf1N1B4_1 -1.1 -2.1 Colicin V production protein compare
Pf1N1B4_5779 -1.1 -2.1 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_241 -1.1 -2.2 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_4194 -1.1 -3.0 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_5425 -1.1 -1.5 DNA-binding protein HU-beta compare
Pf1N1B4_4459 -1.1 -1.9 Thermostable hemolysin delta-VPH compare
Pf1N1B4_5043 -1.1 -2.5 hypothetical protein compare
Pf1N1B4_4661 -1.1 -3.0 Cell division inhibitor SULA compare
Pf1N1B4_448 -1.1 -2.3 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_2621 -1.1 -1.4 PspA/IM30 family protein compare
Pf1N1B4_228 -1.0 -1.7 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_4223 -1.0 -2.1 Transcriptional regulator compare
Pf1N1B4_3413 -1.0 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_139 -1.0 -2.3 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_2773 -1.0 -3.5 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_4301 -1.0 -2.6 hypothetical protein compare
Pf1N1B4_1782 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_3625 -1.0 -2.1 Flagellar synthesis regulator FleN compare
Pf1N1B4_3011 -1.0 -1.8 Tyrosine recombinase XerD compare
Pf1N1B4_4473 -1.0 -2.1 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_1679 -1.0 -1.7 Membrane-fusion protein compare
Pf1N1B4_3222 -1.0 -1.1 Ferredoxin compare
Pf1N1B4_3485 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_1617 -1.0 -4.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3334 -1.0 -2.9 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Pf1N1B4_3820 -1.0 -5.0 2-methylcitrate synthase (EC 2.3.3.5) compare
Pf1N1B4_4627 -1.0 -3.3 FIG00957600: hypothetical protein compare
Pf1N1B4_5718 -1.0 -2.1 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_5624 -1.0 -2.1 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_4979 -1.0 -2.6 Transcriptional regulator, AsnC family compare
Pf1N1B4_5817 -0.9 -2.3 Decarboxylase family protein compare
Pf1N1B4_3789 -0.9 -3.2 Superfamily II DNA/RNA helicases, SNF2 family compare
Pf1N1B4_6 -0.9 -2.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5219 -0.9 -1.8 tRNA-Gly-CCC compare
Pf1N1B4_12 -0.9 -3.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_5348 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_1458 -0.9 -3.5 Probable transcription regulator Mig-14 compare
Pf1N1B4_5863 -0.9 -1.5 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf1N1B4_1636 -0.9 -1.5 FIG00954739: hypothetical protein compare
Pf1N1B4_2465 -0.9 -1.6 Two-component response regulator CreB compare
Pf1N1B4_3341 -0.9 -2.9 Cyanate transport protein CynX compare
Pf1N1B4_4527 -0.9 -1.9 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_5708 -0.9 -0.8 Transcriptional regulator, TetR family compare
Pf1N1B4_1315 -0.9 -4.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3065 -0.9 -2.4 FIG00954412: hypothetical protein compare
Pf1N1B4_4402 -0.9 -1.7 SoxH protein, homolog compare
Pf1N1B4_2282 -0.9 -4.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_5063 -0.9 -1.7 Phosphoribosyl transferase domain protein compare
Pf1N1B4_2857 -0.9 -2.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_320 -0.9 -2.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_239 -0.9 -1.6 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_2682 -0.9 -1.6 Antiholin-like protein LrgA compare
Pf1N1B4_1906 -0.9 -1.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4830 -0.9 -1.8 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_2350 -0.9 -2.9 UPF0301 protein YqgE compare
Pf1N1B4_4053 -0.9 -3.1 Cold shock protein CspD compare
Pf1N1B4_2975 -0.9 -1.5 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_1614 -0.9 -1.5 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_3284 -0.9 -2.9 Antitoxin 1 compare
Pf1N1B4_689 -0.8 -1.3 FIG00954888: hypothetical protein compare
Pf1N1B4_5988 -0.8 -2.8 FIG067310: hypothetical protein compare
Pf1N1B4_5729 -0.8 -4.4 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_5261 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_5051 -0.8 -1.5 Sensor protein DegS compare
Pf1N1B4_2362 -0.8 -3.3 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Pf1N1B4_68 -0.8 -2.0 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf1N1B4_612 -0.8 -2.5 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_3715 -0.8 -1.9 Cobalamin synthase compare
Pf1N1B4_3578 -0.8 -2.7 Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45) compare
Pf1N1B4_2392 -0.8 -2.1 Cytochrome c556 compare
Pf1N1B4_578 -0.8 -1.0 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_538 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_5736 -0.8 -2.6 Nitrate/nitrite transporter compare
Pf1N1B4_3787 -0.8 -2.3 FIG00960829: hypothetical protein compare
Pf1N1B4_4870 -0.8 -1.5 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_5747 -0.8 -1.8 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_304 -0.8 -1.9 Deoxyribonuclease TatD compare
Pf1N1B4_2173 -0.8 -1.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_617 -0.8 -1.1 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_3518 -0.8 -1.7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_324 -0.8 -1.0 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_2612 -0.8 -2.0 Putative transport protein compare
Pf1N1B4_906 -0.8 -2.1 Glutaredoxin NrdH compare
Pf1N1B4_1780 -0.8 -1.2 FIG00961586: hypothetical protein compare
Pf1N1B4_2486 -0.8 -0.9 hypothetical protein compare
Pf1N1B4_1386 -0.8 -2.5 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) compare
Pf1N1B4_1958 -0.8 -1.6 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5735 -0.8 -4.5 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) compare
Pf1N1B4_2949 -0.8 -1.8 FIG00956396: hypothetical protein compare
Pf1N1B4_126 -0.8 -1.8 Pirin compare
Pf1N1B4_4671 -0.8 -2.2 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_1756 -0.8 -1.9 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_5575 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_1464 -0.8 -4.1 Glycosyl transferase compare
Pf1N1B4_4257 -0.8 -1.3 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2280 -0.8 -3.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_4343 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_1593 -0.8 -1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4235 -0.8 -2.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf1N1B4_2322 -0.8 -1.5 FIG015547: peptidase, M16 family compare
Pf1N1B4_3503 -0.8 -2.8 Two-component response regulator PfeR, enterobactin compare
Pf1N1B4_4846 -0.8 -2.3 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_5402 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_5645 -0.8 -2.1 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
Pf1N1B4_2469 -0.8 -1.6 Glutathione S-transferase family protein compare
Pf1N1B4_4433 -0.8 -2.1 FIG035246: DoxX family protein compare
Pf1N1B4_2339 -0.8 -0.9 COG1872 compare
Pf1N1B4_4912 -0.8 -1.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_345 -0.8 -1.6 Integration host factor beta subunit compare
Pf1N1B4_1831 -0.8 -4.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_532 -0.7 -2.2 Transcriptional regulators, LysR family compare
Pf1N1B4_1626 -0.7 -3.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_3812 -0.7 -2.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_4880 -0.7 -2.4 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
Pf1N1B4_1781 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_3038 -0.7 -3.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_2688 -0.7 -2.0 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_2054 -0.7 -2.0 FIG00964469: hypothetical protein compare
Pf1N1B4_598 -0.7 -2.6 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf1N1B4_4029 -0.7 -1.2 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_961 -0.7 -5.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_4953 -0.7 -2.2 Selenocysteine-specific translation elongation factor compare
Pf1N1B4_4004 -0.7 -1.4 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_3078 -0.7 -1.6 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_960 -0.7 -4.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_5119 -0.7 -2.4 Putative hemagglutinin/hemolysin-related protein compare
Pf1N1B4_5814 -0.7 -1.9 putative membrane protein compare
Pf1N1B4_114 -0.7 -2.3 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_4177 -0.7 -1.8 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_3235 -0.7 -2.8 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf1N1B4_2456 -0.7 -2.1 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_5916 -0.7 -2.0 Similar to non-heme chloroperoxidase, sll5080 homolog compare
Pf1N1B4_4015 -0.7 -3.6 FIG00958844: hypothetical protein compare
Pf1N1B4_4103 -0.7 -1.3 Flagellar synthesis regulator FleN compare
Pf1N1B4_2684 -0.7 -1.4 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_1093 -0.7 -2.5 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) compare
Pf1N1B4_3290 -0.7 -1.2 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_1971 -0.7 -2.1 SAM-dependent methyltransferases compare
Pf1N1B4_847 -0.7 -3.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2433 -0.7 -1.3 FIG00953108: hypothetical protein compare
Pf1N1B4_380 -0.7 -2.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_3281 -0.7 -2.2 AidA compare
Pf1N1B4_4212 -0.7 -0.9 Gfa-like protein compare
Pf1N1B4_962 -0.7 -4.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_770 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_1236 -0.7 -3.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_3322 -0.7 -4.3 L-aspartate oxidase (EC 1.4.3.16) compare
Pf1N1B4_5734 -0.7 -3.0 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_3125 -0.7 -2.1 FIG00954242: hypothetical protein compare
Pf1N1B4_4946 -0.7 -2.3 putative aminotransferase compare
Pf1N1B4_3620 -0.7 -1.6 Flagellar biosynthesis protein FliR compare
Pf1N1B4_233 -0.7 -2.8 Transcription regulator [contains diacylglycerol kinase catalytic domain] compare
Pf1N1B4_3410 -0.7 -2.9 FIG00964654: hypothetical protein compare
Pf1N1B4_1332 -0.7 -1.3 Cobalt-precorrin-6 synthase, anaerobic compare
Pf1N1B4_15 -0.7 -2.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_124 -0.7 -1.6 Mechanosensitive ion channel compare
Pf1N1B4_580 -0.7 -2.2 FIG00953813: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in denitrifying experiments

For denitrifying Sodium pyruvate across organisms