Experiment set10IT004 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction, replicate A

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -3.9 -6.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_3468 -3.7 -2.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_4678 -3.6 -4.9 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_237 -3.5 -4.2 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_2880 -3.5 -9.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_3976 -3.4 -9.4 Transmembrane regulator protein PrtR compare
Pf1N1B4_5666 -3.3 -3.9 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_5729 -3.2 -9.0 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_5736 -3.1 -5.1 Nitrate/nitrite transporter compare
Pf1N1B4_5735 -3.1 -12.4 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) compare
Pf1N1B4_2338 -3.1 -7.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_15 -3.0 -4.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1533 -3.0 -8.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1534 -2.9 -16.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1067 -2.9 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_4476 -2.9 -4.7 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_1408 -2.9 -4.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1626 -2.9 -6.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5665 -2.8 -5.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1315 -2.8 -6.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2272 -2.8 -4.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1624 -2.8 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1307 -2.8 -1.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3917 -2.7 -4.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_3518 -2.7 -2.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2545 -2.7 -13.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_257 -2.7 -7.2 sensor histidine kinase/response regulator compare
Pf1N1B4_847 -2.6 -9.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_350 -2.5 -7.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_742 -2.5 -8.8 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_4833 -2.5 -4.5 DNA-binding response regulator, LuxR family compare
Pf1N1B4_4834 -2.5 -6.0 Sensor histidine kinase compare
Pf1N1B4_2549 -2.5 -8.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1831 -2.5 -9.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2547 -2.5 -3.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_12 -2.5 -6.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_4740 -2.5 -4.0 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_345 -2.4 -2.9 Integration host factor beta subunit compare
Pf1N1B4_2337 -2.4 -5.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_4055 -2.4 -8.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_2280 -2.4 -8.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_5734 -2.4 -7.9 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_3697 -2.3 -10.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_977 -2.3 -4.6 Molybdenum cofactor biosynthesis protein MoaC compare
Pf1N1B4_2773 -2.3 -5.4 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_1830 -2.3 -5.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2303 -2.3 -10.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_3091 -2.3 -6.5 Membrane-associated zinc metalloprotease compare
Pf1N1B4_4299 -2.2 -3.9 sensor histidine kinase compare
Pf1N1B4_2651 -2.2 -4.5 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_22 -2.2 -8.0 Transcriptional regulator, TetR family compare
Pf1N1B4_5745 -2.2 -3.8 FIG139928: Putative protease compare
Pf1N1B4_1617 -2.2 -7.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_1434 -2.1 -6.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3281 -2.1 -4.9 AidA compare
Pf1N1B4_2112 -2.1 -12.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2857 -2.1 -3.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3849 -2.1 -4.1 Transcriptional regulator, GntR family compare
Pf1N1B4_3328 -2.0 -1.9 Rhodanese-like domain protein compare
Pf1N1B4_419 -2.0 -3.2 Transcriptional regulator, TetR family compare
Pf1N1B4_1113 -1.9 -5.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_2936 -1.9 -10.1 Putative sulfate permease conserved
Pf1N1B4_3812 -1.9 -3.1 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_5029 -1.9 -3.4 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_4065 -1.9 -5.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_284 -1.8 -10.3 Universal stress protein family compare
Pf1N1B4_3775 -1.8 -1.0 FIG00956876: hypothetical protein compare
Pf1N1B4_2209 -1.8 -7.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2282 -1.8 -7.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1052 -1.8 -2.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_348 -1.8 -4.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2536 -1.8 -7.5 Probable two-component sensor, near polyamine transporter compare
Pf1N1B4_1279 -1.8 -2.6 Flp pilus assembly protein TadB compare
Pf1N1B4_2176 -1.8 -2.5 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_2048 -1.8 -2.5 hypothetical protein compare
Pf1N1B4_3868 -1.8 -5.3 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_5740 -1.8 -3.9 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
Pf1N1B4_3506 -1.7 -5.7 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_5031 -1.7 -2.6 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_626 -1.7 -7.4 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_1153 -1.7 -3.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_1565 -1.7 -2.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2748 -1.7 -7.4 Transcriptional regulator, TetR family compare
Pf1N1B4_1535 -1.7 -3.6 hypothetical protein compare
Pf1N1B4_5760 -1.7 -3.2 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_4627 -1.6 -3.6 FIG00957600: hypothetical protein compare
Pf1N1B4_1725 -1.6 -8.7 Sulfate transport system permease protein CysW compare
Pf1N1B4_5030 -1.6 -4.1 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_5136 -1.6 -6.0 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_1590 -1.6 -4.4 Histidine utilization repressor compare
Pf1N1B4_1234 -1.6 -3.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_5962 -1.6 -3.5 hypothetical protein compare
Pf1N1B4_3871 -1.6 -9.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_1726 -1.5 -5.2 Sulfate transport system permease protein CysT compare
Pf1N1B4_5758 -1.5 -4.4 Nitric oxide reductase activation protein NorD conserved
Pf1N1B4_4835 -1.5 -1.9 Carbon starvation protein A compare
Pf1N1B4_3093 -1.5 -1.2 Outer membrane protein H precursor compare
Pf1N1B4_2807 -1.5 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_5751 -1.5 -4.7 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR compare
Pf1N1B4_962 -1.5 -6.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_4053 -1.5 -3.9 Cold shock protein CspD compare
Pf1N1B4_1139 -1.5 -3.7 FOG: TPR repeat, SEL1 subfamily compare
Pf1N1B4_3869 -1.5 -8.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_3703 -1.4 -2.2 NLP/P60 family protein compare
Pf1N1B4_2860 -1.4 -4.6 FIG00954153: hypothetical protein compare
Pf1N1B4_3872 -1.4 -7.0 Putative analog of CcoH, COG3198 compare
Pf1N1B4_625 -1.4 -3.8 FIG023103: Predicted transmembrane protein compare
Pf1N1B4_3831 -1.4 -4.0 CmpX compare
Pf1N1B4_1235 -1.4 -4.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_2548 -1.4 -3.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_961 -1.4 -9.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_1724 -1.4 -3.0 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_716 -1.4 -4.1 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_4043 -1.4 -2.7 Type II and III secretion system family protein compare
Pf1N1B4_3870 -1.4 -9.4 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_5763 -1.4 -3.3 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_2145 -1.4 -1.8 Translation initiation inhibitor compare
Pf1N1B4_733 -1.3 -1.4 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_2859 -1.3 -6.9 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4851 -1.3 -2.5 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_2872 -1.3 -7.4 FIG00955330: hypothetical protein compare
Pf1N1B4_1608 -1.3 -2.8 FIG00956533: hypothetical protein compare
Pf1N1B4_3766 -1.3 -5.1 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_2840 -1.3 -3.7 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_106 -1.3 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_952 -1.3 -1.1 Cell division protein MraZ compare
Pf1N1B4_2225 -1.3 -7.6 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_1236 -1.3 -4.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_1246 -1.3 -2.4 FIG00954047: hypothetical protein compare
Pf1N1B4_5780 -1.3 -4.2 Nitrous oxide reductase maturation protein NosD compare
Pf1N1B4_1147 -1.3 -5.6 Fructose repressor FruR, LacI family compare
Pf1N1B4_644 -1.3 -1.5 Cold shock protein CspC compare
Pf1N1B4_2879 -1.3 -2.8 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_4103 -1.3 -2.4 Flagellar synthesis regulator FleN compare
Pf1N1B4_3726 -1.3 -4.8 Sensory box histidine kinase/response regulator compare
Pf1N1B4_5567 -1.3 -4.7 transcriptional regulator MvaT, P16 subunit, putative compare
Pf1N1B4_1625 -1.3 -3.1 FIG00956267: hypothetical protein compare
Pf1N1B4_3445 -1.3 -3.1 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_5659 -1.3 -4.7 NfuA Fe-S protein maturation compare
Pf1N1B4_1845 -1.3 -2.4 FIG00954395: hypothetical protein compare
Pf1N1B4_5746 -1.2 -3.5 FIG139552: Putative protease compare
Pf1N1B4_1081 -1.2 -3.7 Ribosome hibernation protein YhbH compare
Pf1N1B4_2706 -1.2 -1.8 FIG00954871: hypothetical protein compare
Pf1N1B4_3656 -1.2 -2.1 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_3826 -1.2 -6.4 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Pf1N1B4_4654 -1.2 -4.7 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf1N1B4_777 -1.2 -5.5 Membrane protein glpM compare
Pf1N1B4_3044 -1.2 -3.2 Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110 compare
Pf1N1B4_235 -1.2 -4.5 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_115 -1.2 -2.4 Membrane protein mosC compare
Pf1N1B4_2036 -1.2 -2.7 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_4123 -1.2 -1.6 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_2939 -1.2 -3.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_3538 -1.2 -2.1 Transcriptional regulator, AraC family compare
Pf1N1B4_3820 -1.2 -4.3 2-methylcitrate synthase (EC 2.3.3.5) compare
Pf1N1B4_16 -1.2 -3.0 Cys regulon transcriptional activator CysB compare
Pf1N1B4_1059 -1.2 -2.1 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_1632 -1.2 -3.4 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf1N1B4_2011 -1.2 -6.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_4721 -1.2 -3.4 Nuclease inhibitor compare
Pf1N1B4_421 -1.2 -3.9 Type IV pilus biogenesis protein PilZ compare
Pf1N1B4_1528 -1.1 -2.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4593 -1.1 -4.3 ABC transporter, periplasmic substrate-binding protein compare
Pf1N1B4_2541 -1.1 -5.2 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf1N1B4_2986 -1.1 -5.0 sensor histidine kinase compare
Pf1N1B4_3435 -1.1 -1.9 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_5311 -1.1 -1.4 hypothetical protein compare
Pf1N1B4_5738 -1.1 -4.0 Nitrate/nitrite transporter compare
Pf1N1B4_5476 -1.1 -2.2 hypothetical protein compare
Pf1N1B4_960 -1.1 -6.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_2867 -1.1 -3.1 Hemin ABC transporter, permease protein compare
Pf1N1B4_3074 -1.1 -1.6 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_2105 -1.1 -1.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2975 -1.1 -1.7 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_1504 -1.1 -1.4 Acyl carrier protein compare
Pf1N1B4_2010 -1.1 -4.3 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_4219 -1.1 -1.9 FIG01074225: hypothetical protein compare
Pf1N1B4_4857 -1.1 -3.3 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_1627 -1.1 -2.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_5779 -1.1 -2.1 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_2734 -1.1 -1.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_2384 -1.1 -3.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_5095 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_1128 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_2771 -1.0 -3.9 Carbon starvation protein A compare
Pf1N1B4_906 -1.0 -3.0 Glutaredoxin NrdH compare
Pf1N1B4_702 -1.0 -3.2 Transcriptional regulator PobR, AraC family compare
Pf1N1B4_1375 -1.0 -5.1 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_1069 -1.0 -3.2 YrbA protein compare
Pf1N1B4_412 -1.0 -1.1 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_408 -1.0 -3.2 Transcriptional regulator, GntR family compare
Pf1N1B4_358 -1.0 -4.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_4585 -1.0 -2.0 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_327 -1.0 -1.1 hypothetical protein compare
Pf1N1B4_909 -1.0 -1.7 Ketosteroid isomerase-related protein compare
Pf1N1B4_3843 -1.0 -2.9 Ribosome modulation factor compare
Pf1N1B4_3279 -1.0 -2.4 putative membrane protein compare
Pf1N1B4_3081 -1.0 -7.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4132 -1.0 -1.3 Mobile element protein compare
Pf1N1B4_1636 -1.0 -1.6 FIG00954739: hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For denitrifying Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For denitrifying Sodium pyruvate across organisms