Experiment set10IT003 for Ralstonia solanacearum GMI1000
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Group: survivalMedia: Water + Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Culturing: RalstoniaGMI1000_ML2, flask, Aerobic, at 28 (C)
By: Brian Ingel on 5-Nov-21
Specific Phenotypes
For 9 genes in this experiment
For survival Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Urea cycle and metabolism of amino groups
- Arginine and proline metabolism
- Selenoamino acid metabolism
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| putrescine biosynthesis III | 2 | 2 | 1 |
| L-arginine degradation VII (arginase 3 pathway) | 2 | 2 | 1 |
| L-canavanine degradation I | 2 | 1 | 1 |
| L-arginine degradation I (arginase pathway) | 3 | 3 | 1 |
| L-arginine degradation VI (arginase 2 pathway) | 4 | 4 | 1 |
| superpathway of putrescine biosynthesis | 4 | 4 | 1 |
| urea cycle | 5 | 4 | 1 |
| L-Nδ-acetylornithine biosynthesis | 7 | 6 | 1 |
| L-citrulline biosynthesis | 8 | 8 | 1 |
| superpathway of polyamine biosynthesis I | 8 | 7 | 1 |
| superpathway of polyamine biosynthesis II | 8 | 5 | 1 |
| peptidoglycan recycling II | 10 | 8 | 1 |
| superpathway of L-citrulline metabolism | 12 | 10 | 1 |
| peptidoglycan recycling I | 14 | 10 | 1 |
| superpathway of hyoscyamine (atropine) and scopolamine biosynthesis | 16 | 4 | 1 |
| superpathway of arginine and polyamine biosynthesis | 17 | 16 | 1 |