Experiment set10H9 for Pseudomonas stutzeri RCH2

Compare to:

D-Maltose monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3647 -6.9 -4.7 Indole-3-glycerol phosphate synthase compare
Psest_0279 -6.6 -6.4 methionine biosynthesis protein MetW compare
Psest_0153 -6.5 -8.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0508 -6.5 -9.9 gamma-glutamyl phosphate reductase compare
Psest_3648 -6.4 -8.7 anthranilate phosphoribosyltransferase compare
Psest_0871 -6.3 -9.6 maltose ABC transporter, ATPase component MalK (from data) conserved
Psest_3650 -6.1 -14.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3866 -6.0 -18.5 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0853 -6.0 -4.1 6-phosphogluconolactonase compare
Psest_0864 -5.9 -12.1 maltose ABC transporter, permease component 1 (MalF) (from data) conserved
Psest_0855 -5.9 -7.0 NAD-dependent aldehyde dehydrogenases compare
Psest_3864 -5.8 -15.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2584 -5.8 -5.7 Phosphoribosylanthranilate isomerase compare
Psest_0852 -5.8 -8.9 glucose-6-phosphate 1-dehydrogenase compare
Psest_0062 -5.8 -12.9 tryptophan synthase, alpha subunit compare
Psest_2578 -5.7 -13.9 O-succinylhomoserine sulfhydrylase compare
Psest_0866 -5.7 -10.3 ATP-dependent transcriptional regulator conserved
Psest_3299 -5.7 -12.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0063 -5.7 -11.6 tryptophan synthase, beta subunit compare
Psest_3960 -5.6 -3.5 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3384 -5.5 -9.8 glutamate 5-kinase compare
Psest_3226 -5.4 -2.0 Predicted membrane protein compare
Psest_0326 -5.4 -17.8 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0155 -5.4 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2333 -5.4 -2.0 Protein of unknown function (DUF3359). compare
Psest_3298 -5.4 -13.9 histidinol dehydrogenase compare
Psest_0152 -5.3 -5.4 Imidazoleglycerol-phosphate dehydratase compare
Psest_3818 -5.3 -9.6 endoribonuclease L-PSP, putative compare
Psest_0325 -5.3 -11.3 Putative threonine efflux protein compare
Psest_0280 -5.3 -16.0 homoserine O-acetyltransferase compare
Psest_3649 -5.2 -11.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3943 -5.2 -5.1 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0863 -5.2 -21.2 maltose ABC transporter, substrate-binding component MalE (from data) conserved
Psest_0849 -5.2 -17.4 6-phosphogluconate dehydratase compare
Psest_2591 -5.2 -4.9 3-isopropylmalate dehydratase, large subunit compare
Psest_0870 -5.1 -15.0 Alpha-glucosidase (EC 3.2.1.20) (from data) conserved
Psest_0865 -5.1 -14.6 maltose ABC transporter, permease component 2 (MalG) (from data) conserved
Psest_3944 -5.0 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1037 -4.9 -4.6 acetolactate synthase, small subunit compare
Psest_0687 -4.7 -10.5 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1473 -4.6 -8.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2589 -4.4 -12.2 3-isopropylmalate dehydrogenase compare
Psest_0313 -4.1 -8.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2590 -4.1 -2.1 3-isopropylmalate dehydratase, small subunit compare
Psest_1772 -4.0 -6.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0850 -3.9 -14.7 glucokinase, proteobacterial type compare
Psest_2158 -3.7 -21.5 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_1295 -3.5 -8.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1805 -3.4 -2.5 integration host factor, beta subunit compare
Psest_0999 -3.2 -2.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0450 -3.2 -11.4 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) compare
Psest_3998 -3.2 -9.2 glutamate--cysteine ligase compare
Psest_2579 -3.2 -5.2 amidophosphoribosyltransferase compare
Psest_3306 -3.1 -7.5 conserved hypothetical integral membrane protein compare
Psest_3297 -3.1 -12.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2651 -3.0 -6.5 DNA topoisomerase I, bacterial compare
Psest_4085 -3.0 -16.9 Biotin carboxylase compare
Psest_1974 -3.0 -5.0 integration host factor, alpha subunit compare
Psest_3305 -3.0 -9.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_4084 -2.9 -16.9 oxaloacetate decarboxylase alpha subunit compare
Psest_0327 -2.9 -5.3 Transcriptional regulator compare
Psest_4088 -2.9 -6.1 Transcriptional regulators compare
Psest_2712 -2.8 -6.1 Surface lipoprotein compare
Psest_2585 -2.8 -1.9 pseudouridylate synthase I compare
Psest_3307 -2.8 -9.7 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3303 -2.7 -7.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0489 -2.7 -1.8 phosphoserine phosphatase SerB compare
Psest_3573 -2.7 -6.0 dTDP-4-dehydrorhamnose reductase compare
Psest_0297 -2.6 -6.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3322 -2.6 -19.5 TIGR02099 family protein compare
Psest_4086 -2.6 -12.2 Transcriptional regulator compare
Psest_3809 -2.5 -7.8 hypothetical protein compare
Psest_3159 -2.5 -5.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_4191 -2.4 -5.0 Transcriptional regulator compare
Psest_2714 -2.4 -3.5 7-cyano-7-deazaguanine reductase compare
Psest_2988 -2.4 -9.3 aspartate kinase, monofunctional class compare
Psest_3100 -2.4 -3.2 RNA polymerase sigma factor RpoE compare
Psest_1896 -2.4 -5.0 ABC-type sugar transport system, periplasmic component compare
Psest_1695 -2.4 -6.2 Tfp pilus assembly protein PilZ compare
Psest_3190 -2.4 -6.5 pyruvate kinase compare
Psest_1013 -2.4 -1.6 phosphoribosylamine--glycine ligase compare
Psest_1895 -2.3 -8.2 Signal transduction histidine kinase compare
Psest_0466 -2.3 -4.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2329 -2.3 -14.3 Transcriptional regulator compare
Psest_3810 -2.2 -1.5 orotate phosphoribosyltransferase compare
Psest_0491 -2.2 -11.9 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1510 -2.2 -4.2 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0868 -2.2 -7.4 Glutathione S-transferase compare
Psest_4097 -2.2 -10.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1814 -2.1 -13.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0969 -2.1 -2.4 transcription elongation factor GreA compare
Psest_0346 -2.1 -3.9 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_3288 -2.1 -13.4 type IV-A pilus assembly ATPase PilB compare
Psest_3287 -2.1 -6.1 Type II secretory pathway, component PulF compare
Psest_0442 -2.0 -2.4 ATPases of the AAA+ class compare
Psest_2809 -2.0 -2.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1474 -2.0 -1.9 phosphoribosylaminoimidazole synthetase compare
Psest_0243 -2.0 -2.2 hypothetical protein compare
Psest_1897 -2.0 -11.4 ABC-type sugar transport systems, permease components compare
Psest_0170 -1.9 -7.0 5,10-methenyltetrahydrofolate synthetase compare
Psest_1900 -1.9 -12.8 Maltoporin (phage lambda and maltose receptor) compare
Psest_1879 -1.9 -3.1 Trk-type K+ transport systems, membrane components compare
Psest_1899 -1.9 -5.7 ABC-type sugar transport systems, ATPase components compare
Psest_0300 -1.9 -8.7 Methyl-accepting chemotaxis protein compare
Psest_2967 -1.9 -2.3 flagellar basal-body rod protein FlgC compare
Psest_4005 -1.9 -6.3 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_3731 -1.9 -11.7 exopolyphosphatase compare
Psest_2945 -1.9 -2.1 septum site-determining protein MinC compare
Psest_0520 -1.9 -1.3 hypothetical protein compare
Psest_1686 -1.8 -4.1 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1765 -1.8 -7.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4003 -1.8 -3.0 TIGR00153 family protein compare
Psest_3375 -1.8 -9.6 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3806 -1.7 -6.5 Phosphomannomutase compare
Psest_3715 -1.7 -12.8 type IV pilus secretin (or competence protein) PilQ compare
Psest_0867 -1.7 -2.0 hypothetical protein compare
Psest_1898 -1.7 -9.5 ABC-type sugar transport system, permease component compare
Psest_2968 -1.7 -9.0 flagellar basal-body rod protein FlgB compare
Psest_2104 -1.7 -2.3 IscR-regulated protein YhgI compare
Psest_1813 -1.7 -11.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1505 -1.7 -2.1 Organic radical activating enzymes compare
Psest_0417 -1.7 -2.9 Acyl-CoA dehydrogenases compare
Psest_1704 -1.7 -1.6 Dehydrogenases (flavoproteins) compare
Psest_2001 -1.7 -1.6 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1506 -1.7 -6.9 queuosine biosynthesis protein QueC compare
Psest_3716 -1.7 -10.6 Tfp pilus assembly protein PilP compare
Psest_0869 -1.7 -3.8 Acetyltransferase (isoleucine patch superfamily) compare
Psest_1054 -1.7 -7.3 Diaminopimelate decarboxylase compare
Psest_2810 -1.7 -4.2 5'/3'-nucleotidase SurE compare
Psest_3304 -1.6 -4.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1242 -1.6 -3.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4098 -1.6 -3.5 Superfamily I DNA and RNA helicases compare
Psest_0737 -1.6 -1.4 Cu(I)-responsive transcriptional regulator compare
Psest_3178 -1.6 -3.4 formyltetrahydrofolate deformylase compare
Psest_3767 -1.6 -4.6 tyrosine recombinase XerC compare
Psest_1486 -1.6 -5.0 hypothetical protein compare
Psest_0411 -1.6 -8.9 biotin synthetase compare
Psest_2088 -1.6 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1277 -1.6 -9.0 2-isopropylmalate synthase, yeast type compare
Psest_2527 -1.5 -6.6 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2845 -1.5 -8.8 [Protein-PII] uridylyltransferase compare
Psest_0706 -1.5 -7.1 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_4287 -1.5 -5.8 Predicted glutamine amidotransferases compare
Psest_0285 -1.5 -8.2 pilus retraction protein PilT compare
Psest_1260 -1.5 -6.6 type IV pilus biogenesis/stability protein PilW compare
Psest_0208 -1.4 -7.4 Uncharacterized protein conserved in bacteria compare
Psest_3289 -1.4 -5.5 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0359 -1.4 -3.1 Transcriptional regulators compare
Psest_1947 -1.4 -1.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0248 -1.4 -7.6 Transcriptional regulator compare
Psest_2775 -1.4 -2.9 Glycerol-3-phosphate dehydrogenase compare
Psest_3717 -1.4 -6.0 Tfp pilus assembly protein PilO compare
Psest_3719 -1.4 -9.9 type IV pilus assembly protein PilM compare
Psest_1000 -1.4 -7.3 PAS domain S-box compare
Psest_3718 -1.4 -4.4 Tfp pilus assembly protein PilN compare
Psest_4044 -1.4 -3.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3963 -1.4 -7.5 PAS domain S-box compare
Psest_3766 -1.4 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_0705 -1.4 -8.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1012 -1.3 -3.7 Signal transduction histidine kinase compare
Psest_4177 -1.3 -2.2 flagellar biosynthetic protein FliP compare
Psest_0175 -1.3 -6.0 Xaa-Pro aminopeptidase compare
Psest_3803 -1.3 -1.7 DNA repair protein radc compare
Psest_3123 -1.3 -2.5 dihydroorotase, homodimeric type compare
Psest_2047 -1.3 -4.1 Signal transduction histidine kinase compare
Psest_0024 -1.3 -6.8 LysM domain. compare
Psest_4343 -1.3 -3.6 Protein of unknown function (DUF3301). compare
Psest_4406 -1.3 -1.4 hypothetical protein compare
Psest_2507 -1.3 -9.6 Flagellin and related hook-associated proteins compare
Psest_1139 -1.3 -4.4 PAS domain S-box compare
Psest_4405 -1.3 -1.4 hypothetical protein compare
Psest_2331 -1.3 -7.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_3395 -1.3 -1.0 hypothetical protein compare
Psest_1496 -1.3 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_0296 -1.2 -5.6 glutathione synthetase, prokaryotic compare
Psest_0993 -1.2 -6.5 Glucose-6-phosphate isomerase compare
Psest_1075 -1.2 -5.9 Predicted transcriptional regulators compare
Psest_1994 -1.2 -3.5 Amidases related to nicotinamidase compare
Psest_0020 -1.2 -4.0 K+ transport systems, NAD-binding component compare
Psest_3338 -1.2 -1.5 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1292 -1.2 -5.4 monothiol glutaredoxin, Grx4 family compare
Psest_0193 -1.2 -1.1 conserved hypothetical protein compare
Psest_3546 -1.2 -1.5 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0207 -1.2 -3.0 hypothetical protein compare
Psest_2586 -1.2 -10.2 FimV N-terminal domain compare
Psest_3129 -1.2 -1.0 tyrosine recombinase XerD compare
Psest_3351 -1.1 -3.9 peptide chain release factor 3 compare
Psest_3419 -1.1 -5.5 Predicted transcriptional regulators compare
Psest_3777 -1.1 -4.2 diguanylate cyclase (GGDEF) domain compare
Psest_1259 -1.1 -3.9 23S rRNA m2A2503 methyltransferase compare
Psest_2530 -1.1 -3.9 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1905 -1.1 -1.1 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3286 -1.1 -4.5 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_2532 -1.1 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1241 -1.1 -5.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3013 -1.1 -2.2 cobyrinic acid a,c-diamide synthase compare
Psest_0707 -1.0 -4.4 MYND finger. compare
Psest_1804 -1.0 -1.5 Superfamily II DNA and RNA helicases compare
Psest_0709 -1.0 -6.0 pseudouridine synthase, RluA family compare
Psest_2232 -1.0 -7.5 UTP-glucose-1-phosphate uridylyltransferase compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source D-Maltose monohydrate in Pseudomonas stutzeri RCH2

For carbon source D-Maltose monohydrate across organisms