Experiment set10H6 for Pseudomonas stutzeri RCH2

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0508 -7.3 -7.1 gamma-glutamyl phosphate reductase compare
Psest_3354 -6.8 -6.6 1-phosphofructokinase (EC 2.7.1.56) (from data) conserved
Psest_0279 -6.5 -6.4 methionine biosynthesis protein MetW compare
Psest_3384 -6.3 -6.1 glutamate 5-kinase compare
Psest_3647 -6.3 -6.1 Indole-3-glycerol phosphate synthase compare
Psest_3353 -6.3 -13.4 PTS system, fructose-specific, IIB component/PTS system, fructose subfamily, IIC component conserved
Psest_2591 -6.2 -4.3 3-isopropylmalate dehydratase, large subunit compare
Psest_3648 -6.2 -9.4 anthranilate phosphoribosyltransferase compare
Psest_3866 -6.1 -18.0 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0155 -5.9 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2590 -5.9 -2.0 3-isopropylmalate dehydratase, small subunit compare
Psest_0852 -5.9 -9.8 glucose-6-phosphate 1-dehydrogenase compare
Psest_2578 -5.9 -15.6 O-succinylhomoserine sulfhydrylase compare
Psest_3650 -5.8 -15.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0063 -5.8 -10.4 tryptophan synthase, beta subunit compare
Psest_0855 -5.7 -7.9 NAD-dependent aldehyde dehydrogenases compare
Psest_3298 -5.7 -12.8 histidinol dehydrogenase compare
Psest_0062 -5.7 -13.3 tryptophan synthase, alpha subunit compare
Psest_0326 -5.7 -19.8 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3226 -5.6 -1.8 Predicted membrane protein compare
Psest_2584 -5.5 -7.6 Phosphoribosylanthranilate isomerase compare
Psest_0993 -5.5 -9.2 Glucose-6-phosphate isomerase compare
Psest_0327 -5.4 -10.9 Transcriptional regulator compare
Psest_0153 -5.4 -14.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3864 -5.3 -17.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_1473 -5.3 -8.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3355 -5.2 -7.1 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) conserved
Psest_0280 -5.0 -17.0 homoserine O-acetyltransferase compare
Psest_0325 -4.9 -12.7 Putative threonine efflux protein compare
Psest_3299 -4.9 -15.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0313 -4.8 -7.4 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2589 -4.7 -15.7 3-isopropylmalate dehydrogenase compare
Psest_0359 -4.7 -3.9 Transcriptional regulators compare
Psest_0853 -4.7 -7.1 6-phosphogluconolactonase compare
Psest_1037 -4.6 -4.5 acetolactate synthase, small subunit compare
Psest_0152 -4.5 -6.0 Imidazoleglycerol-phosphate dehydratase compare
Psest_3943 -4.3 -7.2 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3944 -4.2 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1805 -3.9 -3.5 integration host factor, beta subunit compare
Psest_2579 -3.8 -3.7 amidophosphoribosyltransferase compare
Psest_1765 -3.8 -10.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0170 -3.8 -10.6 5,10-methenyltetrahydrofolate synthetase compare
Psest_4084 -3.7 -20.1 oxaloacetate decarboxylase alpha subunit compare
Psest_1813 -3.7 -14.2 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0687 -3.6 -9.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_4085 -3.4 -16.9 Biotin carboxylase compare
Psest_2988 -3.3 -9.6 aspartate kinase, monofunctional class compare
Psest_2329 -3.3 -17.5 Transcriptional regulator compare
Psest_3732 -3.3 -11.0 polyphosphate kinase 1 compare
Psest_1772 -3.1 -7.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3649 -3.1 -10.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1657 -2.9 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0417 -2.9 -2.0 Acyl-CoA dehydrogenases compare
Psest_0718 -2.8 -4.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_3100 -2.7 -3.2 RNA polymerase sigma factor RpoE compare
Psest_1974 -2.7 -4.7 integration host factor, alpha subunit compare
Psest_2714 -2.6 -3.7 7-cyano-7-deazaguanine reductase compare
Psest_0722 -2.6 -9.3 Predicted ATPase compare
Psest_2331 -2.6 -11.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_1295 -2.6 -7.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2260 -2.6 -18.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1656 -2.5 -3.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1635 -2.5 -19.3 Signal transduction histidine kinase compare
Psest_3988 -2.4 -12.7 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0212 -2.4 -3.2 exodeoxyribonuclease V, gamma subunit compare
Psest_1013 -2.4 -1.7 phosphoribosylamine--glycine ligase compare
Psest_3159 -2.3 -6.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1659 -2.3 -3.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0489 -2.2 -2.1 phosphoserine phosphatase SerB compare
Psest_4003 -2.2 -6.8 TIGR00153 family protein compare
Psest_4086 -2.2 -10.5 Transcriptional regulator compare
Psest_1474 -2.2 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_1999 -2.2 -2.0 pseudouridine synthase compare
Psest_0442 -2.2 -2.1 ATPases of the AAA+ class compare
Psest_3810 -2.2 -1.5 orotate phosphoribosyltransferase compare
Psest_1704 -2.1 -1.4 Dehydrogenases (flavoproteins) compare
Psest_0164 -2.1 -1.5 Glutaredoxin, GrxC family compare
Psest_0097 -2.1 -2.6 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1627 -2.0 -11.7 Superfamily II DNA and RNA helicases compare
Psest_2712 -2.0 -5.0 Surface lipoprotein compare
Psest_0277 -2.0 -2.4 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0959 -2.0 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_3304 -1.9 -6.7 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2380 -1.9 -14.4 Uncharacterized conserved protein compare
Psest_2382 -1.9 -10.6 coenzyme PQQ biosynthesis probable peptidase PqqF compare
Psest_0115 -1.8 -1.9 Predicted integral membrane protein compare
Psest_3045 -1.8 -3.0 Cold shock proteins compare
Psest_3305 -1.8 -8.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1505 -1.8 -1.9 Organic radical activating enzymes compare
Psest_3872 -1.8 -8.7 FAD/FMN-containing dehydrogenases compare
Psest_3818 -1.8 -8.1 endoribonuclease L-PSP, putative compare
Psest_3371 -1.7 -8.4 type IV pilus modification protein PilV compare
Psest_4191 -1.7 -2.6 Transcriptional regulator compare
Psest_3373 -1.7 -6.6 Tfp pilus assembly protein PilX compare
Psest_2379 -1.7 -10.1 PAS domain S-box compare
Psest_1492 -1.7 -9.7 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3372 -1.7 -8.7 Tfp pilus assembly protein PilW compare
Psest_3307 -1.6 -7.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1242 -1.6 -3.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2708 -1.6 -8.3 transaldolase compare
Psest_1725 -1.6 -9.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1506 -1.6 -5.5 queuosine biosynthesis protein QueC compare
Psest_3129 -1.6 -1.7 tyrosine recombinase XerD compare
Psest_3960 -1.5 -1.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1660 -1.5 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2809 -1.5 -3.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2383 -1.5 -6.7 Predicted transcriptional regulators compare
Psest_3374 -1.5 -9.8 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_1496 -1.5 -1.4 Holliday junction DNA helicase, RuvA subunit compare
Psest_1075 -1.5 -5.5 Predicted transcriptional regulators compare
Psest_3749 -1.5 -8.7 Response regulator of the LytR/AlgR family compare
Psest_2944 -1.5 -1.0 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0297 -1.5 -3.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1814 -1.5 -9.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1947 -1.4 -1.3 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_4364 -1.4 -4.3 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_3115 -1.4 -5.7 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0487 -1.4 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_0298 -1.4 -5.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1661 -1.4 -1.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1518 -1.3 -2.5 tRNA_Ser_CGA compare
Psest_0302 -1.3 -11.4 Chemotaxis protein histidine kinase and related kinases compare
Psest_4403 -1.3 -4.1 hypothetical protein compare
Psest_1655 -1.3 -4.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3084 -1.3 -3.0 methyltransferase, putative compare
Psest_0709 -1.3 -6.3 pseudouridine synthase, RluA family compare
Psest_2945 -1.3 -1.5 septum site-determining protein MinC compare
Psest_3297 -1.3 -7.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1888 -1.3 -1.6 Sua5/YciO/YrdC/YwlC family protein compare
Psest_3419 -1.3 -5.4 Predicted transcriptional regulators compare
Psest_2505 -1.3 -8.0 Flagellar capping protein compare
Psest_2446 -1.3 -3.1 acetyl-CoA acetyltransferases compare
Psest_3910 -1.3 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_3370 -1.2 -5.4 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1948 -1.2 -7.2 Ribosome modulation factor compare
Psest_3303 -1.2 -4.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1008 -1.2 -1.6 hypothetical protein compare
Psest_3114 -1.2 -6.1 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0538 -1.2 -11.1 Signal transduction histidine kinase compare
Psest_3352 -1.2 -6.5 DnaK suppressor protein compare
Psest_3306 -1.2 -3.3 conserved hypothetical integral membrane protein compare
Psest_0697 -1.2 -2.3 ribosomal protein L9 compare
Psest_3963 -1.2 -7.5 PAS domain S-box compare
Psest_0191 -1.1 -0.8 PAS domain S-box compare
Psest_4044 -1.1 -3.1 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3655 -1.1 -6.5 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_1900 -1.1 -8.5 Maltoporin (phage lambda and maltose receptor) compare
Psest_0529 -1.1 -7.6 Putative Mg2+ and Co2+ transporter CorC compare
Psest_3085 -1.1 -6.0 methyltransferase, putative compare
Psest_3039 -1.1 -1.7 periplasmic nitrate reductase, NapE protein compare
Psest_3136 -1.1 -5.0 Putative Mg2+ and Co2+ transporter CorB compare
Psest_2645 -1.1 -5.7 Transcriptional regulator compare
Psest_4082 -1.1 -2.8 hypothetical protein compare
Psest_2001 -1.1 -1.5 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0510 -1.1 -4.2 iojap-like ribosome-associated protein compare
Psest_3117 -1.1 -2.4 electron transport complex, RnfABCDGE type, E subunit compare
Psest_4287 -1.1 -4.3 Predicted glutamine amidotransferases compare
Psest_0673 -1.1 -3.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_2643 -1.1 -2.3 Beta-glucosidase-related glycosidases compare
Psest_1241 -1.0 -5.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3289 -1.0 -5.8 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1879 -1.0 -2.3 Trk-type K+ transport systems, membrane components compare
Psest_1602 -1.0 -2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0795 -1.0 -2.8 ABC-type multidrug transport system, ATPase component compare
Psest_0300 -1.0 -6.2 Methyl-accepting chemotaxis protein compare
Psest_0969 -1.0 -2.1 transcription elongation factor GreA compare
Psest_3123 -1.0 -2.4 dihydroorotase, homodimeric type compare
Psest_3532 -1.0 -4.8 Peptidase propeptide and YPEB domain. compare
Psest_1491 -1.0 -3.3 Cold shock proteins compare
Psest_2530 -1.0 -3.3 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_0113 -1.0 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0411 -1.0 -6.4 biotin synthetase compare
Psest_3288 -1.0 -7.3 type IV-A pilus assembly ATPase PilB compare
Psest_2726 -1.0 -1.7 Rhodanese-related sulfurtransferase compare
Psest_3375 -1.0 -5.8 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3664 -1.0 -0.9 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3166 -1.0 -6.1 Superfamily II DNA and RNA helicases compare
Psest_0192 -1.0 -3.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3809 -0.9 -3.5 hypothetical protein compare
Psest_1881 -0.9 -4.4 Nitroreductase compare
Psest_0020 -0.9 -2.7 K+ transport systems, NAD-binding component compare
Psest_1012 -0.9 -3.3 Signal transduction histidine kinase compare
Psest_3112 -0.9 -2.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2047 -0.9 -1.7 Signal transduction histidine kinase compare
Psest_0415 -0.9 -2.9 dethiobiotin synthase compare
Psest_1919 -0.9 -2.0 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_2719 -0.9 -1.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_4098 -0.9 -1.7 Superfamily I DNA and RNA helicases compare
Psest_3913 -0.9 -2.1 hypothetical protein compare
Psest_3013 -0.9 -3.2 cobyrinic acid a,c-diamide synthase compare
Psest_0998 -0.9 -2.1 poly(A) polymerase compare
Psest_4335 -0.9 -1.9 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_4089 -0.9 -4.8 glucose-6-phosphate 1-dehydrogenase compare
Psest_0310 -0.9 -2.4 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3927 -0.9 -2.5 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3979 -0.9 -1.8 Fructose-2,6-bisphosphatase compare
Psest_3573 -0.9 -3.3 dTDP-4-dehydrorhamnose reductase compare
Psest_3296 -0.9 -0.6 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_3113 -0.9 -1.2 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1489 -0.9 -1.9 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source D-Fructose in Pseudomonas stutzeri RCH2

For carbon source D-Fructose across organisms