Experiment set10H5 for Pseudomonas stutzeri RCH2

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0279 -7.1 -4.9 methionine biosynthesis protein MetW compare
Psest_3648 -6.8 -6.7 anthranilate phosphoribosyltransferase compare
Psest_0062 -6.5 -7.7 tryptophan synthase, alpha subunit compare
Psest_2578 -6.4 -13.0 O-succinylhomoserine sulfhydrylase compare
Psest_3354 -6.3 -7.5 1-phosphofructokinase (EC 2.7.1.56) (from data) conserved
Psest_2591 -6.2 -4.3 3-isopropylmalate dehydratase, large subunit compare
Psest_0855 -6.1 -7.3 NAD-dependent aldehyde dehydrogenases compare
Psest_3866 -6.1 -18.5 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0508 -6.1 -11.6 gamma-glutamyl phosphate reductase compare
Psest_3650 -5.9 -15.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3298 -5.9 -12.7 histidinol dehydrogenase compare
Psest_3647 -5.9 -7.1 Indole-3-glycerol phosphate synthase compare
Psest_3299 -5.9 -12.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2590 -5.9 -1.9 3-isopropylmalate dehydratase, small subunit compare
Psest_3384 -5.8 -8.9 glutamate 5-kinase compare
Psest_2584 -5.8 -5.7 Phosphoribosylanthranilate isomerase compare
Psest_0155 -5.8 -5.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0993 -5.7 -8.7 Glucose-6-phosphate isomerase compare
Psest_0280 -5.6 -15.0 homoserine O-acetyltransferase compare
Psest_3353 -5.6 -15.9 PTS system, fructose-specific, IIB component/PTS system, fructose subfamily, IIC component conserved
Psest_0326 -5.6 -20.0 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3355 -5.5 -6.6 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) conserved
Psest_0852 -5.4 -11.6 glucose-6-phosphate 1-dehydrogenase compare
Psest_1037 -5.2 -4.5 acetolactate synthase, small subunit compare
Psest_3864 -5.1 -17.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0853 -5.1 -7.0 6-phosphogluconolactonase compare
Psest_0153 -5.1 -15.4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0170 -5.0 -10.1 5,10-methenyltetrahydrofolate synthetase compare
Psest_0327 -4.9 -11.9 Transcriptional regulator compare
Psest_0325 -4.9 -12.6 Putative threonine efflux protein compare
Psest_0152 -4.9 -4.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_0687 -4.8 -10.7 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0063 -4.7 -13.7 tryptophan synthase, beta subunit compare
Psest_0313 -4.7 -7.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3943 -4.6 -6.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0359 -4.5 -4.2 Transcriptional regulators compare
Psest_2589 -4.5 -14.5 3-isopropylmalate dehydrogenase compare
Psest_1473 -4.5 -9.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1813 -4.4 -18.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3226 -4.1 -1.9 Predicted membrane protein compare
Psest_2579 -3.9 -2.7 amidophosphoribosyltransferase compare
Psest_4085 -3.7 -19.6 Biotin carboxylase compare
Psest_1765 -3.7 -8.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2988 -3.6 -7.5 aspartate kinase, monofunctional class compare
Psest_3732 -3.4 -12.3 polyphosphate kinase 1 compare
Psest_1772 -3.4 -6.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4084 -3.3 -18.7 oxaloacetate decarboxylase alpha subunit compare
Psest_3649 -3.3 -10.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3944 -3.2 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0718 -3.2 -4.7 nicotinate-nucleotide pyrophosphorylase compare
Psest_2329 -3.0 -17.7 Transcriptional regulator compare
Psest_1974 -3.0 -4.2 integration host factor, alpha subunit compare
Psest_0309 -3.0 -2.1 RND family efflux transporter, MFP subunit compare
Psest_0722 -2.9 -9.5 Predicted ATPase compare
Psest_2331 -2.8 -13.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_3100 -2.7 -3.2 RNA polymerase sigma factor RpoE compare
Psest_3988 -2.7 -9.6 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0417 -2.7 -2.6 Acyl-CoA dehydrogenases compare
Psest_0489 -2.7 -1.8 phosphoserine phosphatase SerB compare
Psest_2260 -2.6 -19.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1295 -2.6 -8.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4003 -2.5 -6.0 TIGR00153 family protein compare
Psest_2712 -2.5 -6.6 Surface lipoprotein compare
Psest_3960 -2.4 -2.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1635 -2.4 -17.7 Signal transduction histidine kinase compare
Psest_4086 -2.3 -13.8 Transcriptional regulator compare
Psest_1805 -2.3 -2.5 integration host factor, beta subunit compare
Psest_1657 -2.3 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3305 -2.3 -9.2 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2714 -2.3 -3.3 7-cyano-7-deazaguanine reductase compare
Psest_1627 -2.2 -13.7 Superfamily II DNA and RNA helicases compare
Psest_3303 -2.2 -6.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3307 -2.2 -7.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1474 -2.2 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_3810 -2.2 -1.5 orotate phosphoribosyltransferase compare
Psest_1013 -2.1 -2.9 phosphoribosylamine--glycine ligase compare
Psest_3159 -2.1 -6.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1704 -2.1 -1.4 Dehydrogenases (flavoproteins) compare
Psest_0498 -2.0 -1.4 ribosome small subunit-dependent GTPase A compare
Psest_1012 -1.9 -5.9 Signal transduction histidine kinase compare
Psest_1661 -1.9 -1.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3371 -1.8 -10.0 type IV pilus modification protein PilV compare
Psest_2380 -1.8 -14.2 Uncharacterized conserved protein compare
Psest_0969 -1.8 -2.5 transcription elongation factor GreA compare
Psest_3373 -1.8 -7.3 Tfp pilus assembly protein PilX compare
Psest_2379 -1.8 -10.9 PAS domain S-box compare
Psest_3304 -1.8 -5.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1242 -1.7 -2.6 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0277 -1.7 -2.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3306 -1.7 -5.1 conserved hypothetical integral membrane protein compare
Psest_1505 -1.7 -2.2 Organic radical activating enzymes compare
Psest_2001 -1.7 -1.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3117 -1.7 -3.9 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0442 -1.7 -2.5 ATPases of the AAA+ class compare
Psest_3374 -1.6 -9.9 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_0298 -1.6 -5.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1879 -1.6 -3.4 Trk-type K+ transport systems, membrane components compare
Psest_3129 -1.6 -1.7 tyrosine recombinase XerD compare
Psest_0708 -1.6 -2.2 outer membrane assembly lipoprotein YfiO compare
Psest_3372 -1.6 -8.8 Tfp pilus assembly protein PilW compare
Psest_3045 -1.6 -2.0 Cold shock proteins compare
Psest_1506 -1.6 -7.4 queuosine biosynthesis protein QueC compare
Psest_1947 -1.5 -1.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1655 -1.5 -4.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1492 -1.5 -8.8 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_1660 -1.5 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3872 -1.5 -7.3 FAD/FMN-containing dehydrogenases compare
Psest_2382 -1.5 -9.4 coenzyme PQQ biosynthesis probable peptidase PqqF compare
Psest_1659 -1.4 -3.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0300 -1.4 -8.0 Methyl-accepting chemotaxis protein compare
Psest_0520 -1.4 -1.1 hypothetical protein compare
Psest_1814 -1.4 -9.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2229 -1.4 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_1725 -1.4 -8.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3749 -1.4 -8.6 Response regulator of the LytR/AlgR family compare
Psest_1999 -1.4 -1.4 pseudouridine synthase compare
Psest_0568 -1.4 -2.5 pseudouridine synthase compare
Psest_0302 -1.4 -11.5 Chemotaxis protein histidine kinase and related kinases compare
Psest_0842 -1.4 -1.7 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_1491 -1.4 -3.0 Cold shock proteins compare
Psest_2708 -1.4 -8.4 transaldolase compare
Psest_2809 -1.3 -3.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3979 -1.3 -2.9 Fructose-2,6-bisphosphatase compare
Psest_2872 -1.3 -2.3 protein RecA compare
Psest_4044 -1.3 -3.0 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0310 -1.3 -3.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3850 -1.3 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2643 -1.3 -2.5 Beta-glucosidase-related glycosidases compare
Psest_0538 -1.3 -11.6 Signal transduction histidine kinase compare
Psest_1888 -1.3 -1.6 Sua5/YciO/YrdC/YwlC family protein compare
Psest_0740 -1.3 -2.5 Transcriptional regulator compare
Psest_0999 -1.3 -2.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1656 -1.3 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1895 -1.3 -4.9 Signal transduction histidine kinase compare
Psest_3297 -1.2 -7.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1480 -1.2 -2.1 arsenate reductase (glutaredoxin) compare
Psest_3927 -1.2 -3.7 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_4309 -1.2 -1.9 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_0297 -1.2 -3.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3766 -1.2 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2645 -1.2 -4.8 Transcriptional regulator compare
Psest_0673 -1.2 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3762 -1.2 -3.3 iron donor protein CyaY compare
Psest_0164 -1.2 -1.1 Glutaredoxin, GrxC family compare
Psest_3767 -1.2 -3.7 tyrosine recombinase XerC compare
Psest_3860 -1.2 -3.4 Predicted permeases compare
Psest_1087 -1.2 -1.5 uncharacterized peroxidase-related enzyme compare
Psest_3370 -1.2 -5.7 prepilin-type N-terminal cleavage/methylation domain compare
Psest_2505 -1.2 -7.8 Flagellar capping protein compare
Psest_3064 -1.2 -2.2 hypothetical protein compare
Psest_0998 -1.2 -2.2 poly(A) polymerase compare
Psest_2101 -1.1 -1.7 hypothetical protein compare
Psest_3700 -1.1 -1.5 hypothetical protein compare
Psest_1075 -1.1 -4.8 Predicted transcriptional regulators compare
Psest_3178 -1.1 -3.5 formyltetrahydrofolate deformylase compare
Psest_1241 -1.1 -5.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_2719 -1.1 -1.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0526 -1.1 -1.5 hypothetical protein compare
Psest_3085 -1.1 -6.4 methyltransferase, putative compare
Psest_4287 -1.1 -6.0 Predicted glutamine amidotransferases compare
Psest_4364 -1.1 -4.1 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_0511 -1.1 -1.4 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_1695 -1.1 -3.2 Tfp pilus assembly protein PilZ compare
Psest_1518 -1.1 -2.0 tRNA_Ser_CGA compare
Psest_2447 -1.1 -2.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3419 -1.1 -5.2 Predicted transcriptional regulators compare
Psest_2507 -1.1 -7.8 Flagellin and related hook-associated proteins compare
Psest_3123 -1.1 -2.4 dihydroorotase, homodimeric type compare
Psest_4406 -1.1 -1.2 hypothetical protein compare
Psest_1900 -1.0 -8.2 Maltoporin (phage lambda and maltose receptor) compare
Psest_3963 -1.0 -6.6 PAS domain S-box compare
Psest_1948 -1.0 -5.5 Ribosome modulation factor compare
Psest_3655 -1.0 -4.6 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0959 -1.0 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2383 -1.0 -6.2 Predicted transcriptional regulators compare
Psest_3818 -1.0 -5.4 endoribonuclease L-PSP, putative compare
Psest_2810 -1.0 -3.0 5'/3'-nucleotidase SurE compare
Psest_2271 -1.0 -3.2 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0529 -1.0 -6.7 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0709 -1.0 -5.0 pseudouridine synthase, RluA family compare
Psest_4103 -0.9 -1.3 AraC-type DNA-binding domain-containing proteins compare
Psest_3954 -0.9 -2.3 Small protein A (tmRNA-binding) compare
Psest_1204 -0.9 -2.1 Transcriptional regulators compare
Psest_0503 -0.9 -1.3 Acyl dehydratase compare
Psest_2726 -0.9 -1.4 Rhodanese-related sulfurtransferase compare
Psest_0869 -0.9 -3.1 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0182 -0.9 -4.1 glycine cleavage system H protein compare
Psest_1881 -0.9 -3.2 Nitroreductase compare
Psest_3289 -0.9 -4.6 prepilin-type N-terminal cleavage/methylation domain compare
Psest_4191 -0.9 -2.6 Transcriptional regulator compare
Psest_2253 -0.9 -2.6 small redox-active disulfide protein 2 compare
Psest_3651 -0.9 -3.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2564 -0.9 -4.1 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_3518 -0.9 -1.2 Transcriptional regulators compare
Psest_0311 -0.9 -3.7 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_4274 -0.9 -2.6 hypothetical protein compare
Psest_3377 -0.9 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1463 -0.8 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_3375 -0.8 -5.0 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1691 -0.8 -2.4 aminodeoxychorismate lyase compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source D-Fructose in Pseudomonas stutzeri RCH2

For carbon source D-Fructose across organisms