Experiment set10H40 for Pseudomonas stutzeri RCH2

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0115 -4.2 -1.1 Predicted integral membrane protein compare
Psest_0355 -3.6 -1.6 Glycine cleavage system regulatory protein compare
Psest_1463 -3.6 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_3647 -3.6 -3.5 Indole-3-glycerol phosphate synthase compare
Psest_4085 -3.5 -8.5 Biotin carboxylase compare
Psest_0279 -3.5 -3.4 methionine biosynthesis protein MetW compare
Psest_0508 -3.4 -5.2 gamma-glutamyl phosphate reductase compare
Psest_0280 -3.4 -6.5 homoserine O-acetyltransferase compare
Psest_1640 -3.3 -9.8 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3860 -3.3 -2.0 Predicted permeases compare
Psest_3648 -3.3 -4.5 anthranilate phosphoribosyltransferase compare
Psest_0845 -3.2 -0.8 hypothetical protein compare
Psest_2320 -3.2 -4.4 2-methylcitrate synthase/citrate synthase II compare
Psest_4084 -3.1 -7.6 oxaloacetate decarboxylase alpha subunit compare
Psest_2584 -3.1 -2.2 Phosphoribosylanthranilate isomerase compare
Psest_1302 -3.1 -4.2 Predicted thioesterase compare
Psest_3299 -3.1 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0326 -3.1 -10.1 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3298 -3.1 -6.9 histidinol dehydrogenase compare
Psest_0152 -3.1 -3.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_0153 -3.1 -6.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2591 -3.0 -1.9 3-isopropylmalate dehydratase, large subunit compare
Psest_0063 -3.0 -4.6 tryptophan synthase, beta subunit compare
Psest_3864 -3.0 -8.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2325 -2.9 -7.6 alpha-L-glutamate ligase-related protein compare
Psest_2578 -2.9 -8.2 O-succinylhomoserine sulfhydrylase compare
Psest_3650 -2.9 -7.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3384 -2.9 -4.0 glutamate 5-kinase compare
Psest_0673 -2.8 -1.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3866 -2.8 -11.2 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2293 -2.7 -1.0 hypothetical protein compare
Psest_3140 -2.7 -5.6 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_4086 -2.7 -6.8 Transcriptional regulator compare
Psest_0207 -2.7 -2.5 hypothetical protein compare
Psest_2447 -2.7 -2.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0155 -2.6 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2232 -2.6 -7.4 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2590 -2.6 -0.9 3-isopropylmalate dehydratase, small subunit compare
Psest_3237 -2.5 -1.1 hypothetical protein compare
Psest_2122 -2.5 -0.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3480 -2.5 -1.7 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1813 -2.5 -7.3 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3862 -2.5 -9.7 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1635 -2.5 -11.8 Signal transduction histidine kinase compare
Psest_0062 -2.5 -7.2 tryptophan synthase, alpha subunit compare
Psest_3721 -2.5 -5.0 Malic enzyme compare
Psest_1686 -2.4 -2.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2383 -2.4 -7.4 Predicted transcriptional regulators compare
Psest_0189 -2.4 -6.8 Negative regulator of beta-lactamase expression conserved
Psest_1840 -2.4 -9.5 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_2589 -2.4 -6.0 3-isopropylmalate dehydrogenase compare
Psest_2322 -2.4 -2.8 Transcriptional regulators compare
Psest_2304 -2.3 -0.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1509 -2.3 -5.8 quinolinate synthetase complex, A subunit compare
Psest_3662 -2.3 -2.1 DnaJ-domain-containing proteins 1 compare
Psest_1709 -2.3 -2.8 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_2645 -2.3 -5.6 Transcriptional regulator compare
Psest_0411 -2.3 -7.2 biotin synthetase compare
Psest_1691 -2.2 -2.4 aminodeoxychorismate lyase compare
Psest_1498 -2.2 -1.8 tol-pal system-associated acyl-CoA thioesterase compare
Psest_0325 -2.2 -5.0 Putative threonine efflux protein compare
Psest_2561 -2.2 -0.8 hypothetical protein compare
Psest_3944 -2.2 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3943 -2.2 -2.1 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3951 -2.2 -4.3 proline iminopeptidase, Neisseria-type subfamily compare
Psest_3226 -2.2 -0.8 Predicted membrane protein compare
Psest_1625 -2.2 -2.5 hypothetical protein compare
Psest_3304 -2.2 -1.5 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2585 -2.2 -0.8 pseudouridylate synthase I compare
Psest_3732 -2.2 -5.0 polyphosphate kinase 1 compare
Psest_3973 -2.2 -0.9 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_3355 -2.1 -3.3 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Psest_0103 -2.1 -2.1 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_1473 -2.1 -4.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1819 -2.1 -14.1 Nucleoside-diphosphate-sugar epimerases compare
Psest_3305 -2.1 -2.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2324 -2.1 -11.2 hypothetical protein compare
Psest_2158 -2.1 -10.4 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_2136 -2.0 -5.5 Predicted homoserine dehydrogenase compare
Psest_3307 -2.0 -3.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3303 -2.0 -2.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2260 -2.0 -8.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2066 -2.0 -1.2 ABC-type uncharacterized transport system, permease component compare
Psest_1695 -2.0 -3.1 Tfp pilus assembly protein PilZ compare
Psest_3476 -2.0 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0313 -2.0 -1.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4080 -2.0 -3.6 Carbonic anhydrase compare
Psest_3048 -2.0 -1.8 hypothetical protein compare
Psest_0298 -2.0 -3.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0744 -2.0 -0.7 Uncharacterized conserved protein compare
Psest_2712 -2.0 -1.3 Surface lipoprotein compare
Psest_0993 -1.9 -4.7 Glucose-6-phosphate isomerase compare
Psest_2017 -1.9 -3.0 Predicted acyltransferase compare
Psest_3306 -1.9 -2.3 conserved hypothetical integral membrane protein compare
Psest_0969 -1.9 -1.1 transcription elongation factor GreA compare
Psest_3389 -1.9 -2.6 hypothetical protein compare
Psest_3672 -1.9 -10.2 Putative Ser protein kinase conserved
Psest_3808 -1.9 -9.4 Protein of unknown function (DUF3360). compare
Psest_1115 -1.9 -2.1 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_4178 -1.9 -2.2 hypothetical protein compare
Psest_1717 -1.9 -3.4 benzoate transporter compare
Psest_0260 -1.9 -0.9 Cell division protein compare
Psest_1837 -1.8 -6.1 Endoglucanase compare
Psest_0196 -1.8 -8.5 Uncharacterized membrane protein, required for spore maturation in B.subtilis. conserved
Psest_4286 -1.8 -5.9 Glutamine synthetase conserved
Psest_0327 -1.8 -4.4 Transcriptional regulator compare
Psest_1974 -1.8 -2.2 integration host factor, alpha subunit compare
Psest_2671 -1.8 -2.0 Transcriptional regulator compare
Psest_3788 -1.8 -2.8 xanthine phosphoribosyltransferase compare
Psest_0538 -1.8 -12.5 Signal transduction histidine kinase compare
Psest_1569 -1.8 -4.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2630 -1.8 -2.9 hypothetical protein compare
Psest_4128 -1.8 -0.9 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0737 -1.8 -0.6 Cu(I)-responsive transcriptional regulator compare
Psest_1049 -1.7 -3.1 Uncharacterized paraquat-inducible protein A compare
Psest_4083 -1.7 -10.4 Predicted permease compare
Psest_4170 -1.7 -1.1 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3884 -1.7 -0.6 Signal transduction histidine kinase compare
Psest_4247 -1.7 -2.1 Serine/threonine protein phosphatase compare
Psest_3881 -1.7 -0.7 hypothetical protein compare
Psest_3202 -1.7 -2.6 Flavodoxins compare
Psest_1814 -1.7 -8.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0687 -1.7 -4.1 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2025 -1.7 -0.7 cold shock domain protein CspD compare
Psest_0164 -1.7 -0.6 Glutaredoxin, GrxC family compare
Psest_0412 -1.7 -6.4 8-amino-7-oxononanoate synthase compare
Psest_3200 -1.7 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_3359 -1.7 -3.4 hypothetical protein compare
Psest_1235 -1.7 -5.7 Leucyl aminopeptidase compare
Psest_2855 -1.6 -1.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1056 -1.6 -1.3 2-isopropylmalate synthase, bacterial type compare
Psest_1815 -1.6 -8.4 pseudaminic acid synthase compare
Psest_0922 -1.6 -2.2 alkylhydroperoxidase AhpD family core domain compare
Psest_0919 -1.6 -1.4 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2708 -1.6 -3.9 transaldolase compare
Psest_1990 -1.6 -2.4 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_0105 -1.6 -3.0 malonate decarboxylase, beta subunit compare
Psest_1540 -1.6 -0.9 biotin-dependent carboxylase uncharacterized domain compare
Psest_2766 -1.6 -0.7 hypothetical protein compare
Psest_2316 -1.6 -6.9 phosphoenolpyruvate synthase compare
Psest_3674 -1.5 -8.6 Uncharacterized conserved protein conserved
Psest_2321 -1.5 -3.4 methylisocitrate lyase compare
Psest_3185 -1.5 -1.0 MoxR-like ATPases compare
Psest_0181 -1.5 -3.7 glycine cleavage system T protein compare
Psest_1392 -1.5 -2.3 ABC-type uncharacterized transport systems, ATPase components compare
Psest_1762 -1.5 -1.6 cytochrome c-type biogenesis protein CcmI compare
Psest_1226 -1.5 -1.6 hypothetical protein compare
Psest_3479 -1.5 -3.1 molybdenum cofactor synthesis domain compare
Psest_0510 -1.5 -2.4 iojap-like ribosome-associated protein compare
Psest_3183 -1.4 -4.2 hypothetical protein compare
Psest_2810 -1.4 -3.5 5'/3'-nucleotidase SurE compare
Psest_3673 -1.4 -6.4 Uncharacterized conserved protein conserved
Psest_1514 -1.4 -3.3 Glycine cleavage system regulatory protein compare
Psest_0243 -1.4 -0.7 hypothetical protein compare
Psest_2396 -1.4 -4.2 Predicted transcriptional regulators compare
Psest_2520 -1.4 -1.0 Predicted SAM-dependent methyltransferase compare
Psest_0048 -1.4 -4.1 ABC-type multidrug transport system, ATPase and permease components compare
Psest_0494 -1.4 -5.4 Rhodanese-related sulfurtransferase compare
Psest_2909 -1.4 -2.1 hypothetical protein compare
Psest_2629 -1.4 -2.7 Flp pilus assembly protein, pilin Flp compare
Psest_0087 -1.4 -2.2 hypothetical protein compare
Psest_0389 -1.4 -2.3 hypothetical protein compare
Psest_3550 -1.4 -1.4 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_1923 -1.4 -2.8 adhesin-associated BNR repeat protein (from data) compare
Psest_3994 -1.4 -4.3 Signal transduction histidine kinase compare
Psest_3697 -1.4 -1.2 Outer membrane lipoprotein carrier protein LolA. compare
Psest_3649 -1.4 -4.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3451 -1.3 -4.1 tRNA (uracil-5-)-methyltransferase compare
Psest_4342 -1.3 -2.7 Putative GTPases (G3E family) compare
Psest_2726 -1.3 -0.8 Rhodanese-related sulfurtransferase compare
Psest_1313 -1.3 -1.1 Uncharacterized conserved small protein compare
Psest_2848 -1.3 -1.9 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_4323 -1.3 -6.5 Predicted acyltransferases compare
Psest_0520 -1.3 -0.5 hypothetical protein compare
Psest_3323 -1.3 -2.6 ribonuclease, Rne/Rng family compare
Psest_0397 -1.3 -6.1 Small-conductance mechanosensitive channel compare
Psest_2809 -1.3 -2.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0414 -1.3 -2.8 biotin biosynthesis protein BioC compare
Psest_1557 -1.3 -4.2 Phosphoenolpyruvate carboxylase conserved
Psest_3128 -1.3 -2.8 Protein-disulfide isomerase compare
Psest_1444 -1.3 -3.0 Curli production assembly/transport component CsgF. compare
Psest_1999 -1.3 -0.5 pseudouridine synthase compare
Psest_4222 -1.3 -6.3 Predicted Rossmann fold nucleotide-binding protein conserved
Psest_3070 -1.3 -1.0 3-oxoadipyl-CoA thiolase compare
Psest_4395 -1.3 -5.4 hypothetical protein compare
Psest_0248 -1.2 -3.9 Transcriptional regulator compare
Psest_1522 -1.2 -1.4 hypothetical protein compare
Psest_1486 -1.2 -1.8 hypothetical protein compare
Psest_3910 -1.2 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_4127 -1.2 -4.4 Cyclopropane fatty acid synthase and related methyltransferases compare
Psest_1122 -1.2 -6.7 putative adhesin (DUF1302) (from data) compare
Psest_0632 -1.2 -2.4 hypothetical protein compare
Psest_2557 -1.2 -1.3 Protein of unknown function (DUF2474). compare
Psest_0306 -1.2 -7.2 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2317 -1.2 -4.6 Uncharacterized protein conserved in bacteria compare
Psest_3700 -1.2 -0.7 hypothetical protein compare
Psest_2975 -1.2 -1.6 tRNA_Arg_CCT compare
Psest_1048 -1.2 -4.4 Uncharacterized paraquat-inducible protein A compare
Psest_1089 -1.2 -2.7 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_4350 -1.2 -3.7 Transcriptional regulators of sugar metabolism compare


Specific Phenotypes

For 27 genes in this experiment

For carbon source Sodium propionate in Pseudomonas stutzeri RCH2

For carbon source Sodium propionate across organisms