Experiment set10H40 for Pseudomonas stutzeri RCH2

Compare to:

Sodium propionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Psest_1054 +9.6 24.9 Diaminopimelate decarboxylase compare
Psest_3213 +8.9 35.1 acetate kinase compare
Psest_1055 +8.6 33.6 Saccharopine dehydrogenase and related proteins compare
Psest_4082 +8.6 18.6 hypothetical protein compare
Psest_3214 +8.3 31.1 phosphate acetyltransferase conserved
Psest_1704 +5.5 6.2 Dehydrogenases (flavoproteins) compare
Psest_2864 +4.9 8.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2650 +4.4 8.2 hypothetical protein compare
Psest_1527 +4.2 23.8 Na+/proline symporter compare
Psest_3762 +4.2 12.5 iron donor protein CyaY compare
Psest_1249 +4.1 17.9 serine O-acetyltransferase compare
Psest_3637 +3.9 2.5 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_0417 +3.5 10.5 Acyl-CoA dehydrogenases compare
Psest_0170 +3.5 13.2 5,10-methenyltetrahydrofolate synthetase compare
Psest_1037 +3.4 4.1 acetolactate synthase, small subunit compare
Psest_3710 +3.3 25.7 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3148 +3.2 5.2 hypothetical protein compare
Psest_3711 +3.1 26.0 Glutamate synthase domain 2 compare
Psest_4078 +3.1 4.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1595 +3.1 6.0 Copper chaperone compare
Psest_1144 +3.1 2.9 AmpG-related permease compare
Psest_2646 +3.1 5.8 SOS regulatory protein LexA compare
Psest_3014 +2.9 3.6 cob(I)alamin adenosyltransferase compare
Psest_2714 +2.9 4.3 7-cyano-7-deazaguanine reductase compare
Psest_3296 +2.8 1.9 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_4406 +2.8 2.2 hypothetical protein compare
Psest_1948 +2.7 13.4 Ribosome modulation factor compare
Psest_1679 +2.7 5.1 ribonuclease, Rne/Rng family compare
Psest_3927 +2.7 8.0 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3573 +2.7 10.0 dTDP-4-dehydrorhamnose reductase compare
Psest_1462 +2.6 4.4 3-oxoacyl-[acyl-carrier-protein] synthase III compare
Psest_1863 +2.6 2.0 hypothetical protein compare
Psest_0066 +2.6 3.0 Protein of unknown function (DUF3060). compare
Psest_1870 +2.6 1.9 Transcriptional regulators compare
Psest_2018 +2.6 5.0 Uncharacterized conserved protein compare
Psest_2894 +2.5 3.7 addiction module antidote protein, HigA family compare
Psest_0218 +2.4 7.9 Acyl-CoA hydrolase compare
Psest_2285 +2.4 6.6 ATP-dependent protease La compare
Psest_4314 +2.4 2.0 ABC-type metal ion transport system, ATPase component compare
Psest_3664 +2.3 2.2 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3670 +2.3 13.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_2703 +2.3 1.4 ATPases involved in chromosome partitioning compare
Psest_3527 +2.3 2.2 Pseudouridylate synthases, 23S RNA-specific compare
Psest_1008 +2.3 3.6 hypothetical protein compare
Psest_2651 +2.3 5.8 DNA topoisomerase I, bacterial compare
Psest_1012 +2.2 6.8 Signal transduction histidine kinase compare
Psest_0401 +2.2 3.1 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0541 +2.2 12.9 succinate CoA transferases compare
Psest_4141 +2.2 5.8 3-carboxymuconate cyclase compare
Psest_1700 +2.2 4.6 Transcriptional regulator compare
Psest_2424 +2.2 2.5 K+ transport systems, NAD-binding component compare
Psest_3872 +2.2 13.1 FAD/FMN-containing dehydrogenases compare
Psest_0529 +2.2 5.5 Putative Mg2+ and Co2+ transporter CorC compare
Psest_2944 +2.2 1.5 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_3458 +2.1 5.2 hypothetical protein compare
Psest_2268 +2.1 1.4 Alcohol dehydrogenase, class IV compare
Psest_2752 +2.1 1.4 Uncharacterized protein conserved in bacteria compare
Psest_2988 +2.1 9.1 aspartate kinase, monofunctional class compare
Psest_2719 +2.0 2.0 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0498 +2.0 2.5 ribosome small subunit-dependent GTPase A compare
Psest_1947 +2.0 1.4 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0409 +2.0 3.4 Putative homoserine kinase type II (protein kinase fold) compare
Psest_0015 +2.0 2.0 Tetratricopeptide repeat. compare
Psest_2873 +1.9 1.6 competence/damage-inducible protein CinA C-terminal domain compare
Psest_2110 +1.9 2.4 hypothetical protein compare
Psest_4364 +1.9 3.1 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_3960 +1.9 3.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1167 +1.9 2.3 hypothetical protein compare
Psest_3731 +1.9 10.4 exopolyphosphatase compare
Psest_3117 +1.9 2.2 electron transport complex, RnfABCDGE type, E subunit compare
Psest_4288 +1.9 9.7 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) compare
Psest_1031 +1.8 5.5 Uncharacterized protein conserved in bacteria compare
Psest_4345 +1.8 7.2 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1639 +1.8 2.5 23S rRNA (uracil-5-)-methyltransferase RumA compare
Psest_4044 +1.8 2.4 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1248 +1.8 5.5 RNA methyltransferase, TrmH family, group 1 compare
Psest_3206 +1.8 1.8 Uncharacterized protein conserved in bacteria compare
Psest_0161 +1.8 2.5 Membrane-bound metallopeptidase compare
Psest_0400 +1.8 2.7 Geranylgeranyl pyrophosphate synthase compare
Psest_4049 +1.7 0.9 hypothetical protein compare
Psest_3998 +1.7 6.5 glutamate--cysteine ligase compare
Psest_1721 +1.7 2.3 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_0077 +1.7 2.3 luciferase family oxidoreductase, group 1 compare
Psest_2992 +1.7 1.7 Uncharacterized conserved protein compare
Psest_2643 +1.7 1.1 Beta-glucosidase-related glycosidases compare
Psest_3810 +1.7 1.6 orotate phosphoribosyltransferase compare
Psest_1786 +1.6 1.6 Rhodanese-related sulfurtransferase compare
Psest_2458 +1.6 1.4 MoxR-like ATPases compare
Psest_3494 +1.6 1.9 hypothetical protein compare
Psest_1508 +1.6 6.8 succinate CoA transferases conserved
Psest_3961 +1.6 5.9 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_1631 +1.6 2.3 Uncharacterized conserved small protein compare
Psest_3456 +1.6 1.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_1661 +1.6 1.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2001 +1.5 1.4 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1804 +1.5 1.0 Superfamily II DNA and RNA helicases compare
Psest_1738 +1.5 4.9 flagellar biosynthetic protein FlhF compare
Psest_3270 +1.5 2.8 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0684 +1.5 2.5 GTP-binding protein HflX compare
Psest_0393 +1.5 5.8 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0952 +1.5 2.0 Uncharacterized conserved protein compare
Psest_2718 +1.5 1.6 hypothetical protein compare
Psest_3136 +1.5 4.4 Putative Mg2+ and Co2+ transporter CorB compare
Psest_1763 +1.5 2.6 hypothetical protein compare
Psest_2183 +1.5 2.1 Transcriptional regulator compare
Psest_1743 +1.5 2.8 Chemotaxis protein histidine kinase and related kinases compare
Psest_2788 +1.5 1.4 Phosphoglycerate dehydrogenase and related dehydrogenases compare
Psest_3537 +1.4 4.4 hypothetical protein compare
Psest_1653 +1.4 9.5 transcription-repair coupling factor (mfd) compare
Psest_1139 +1.4 2.1 PAS domain S-box compare
Psest_0691 +1.4 7.7 ribonuclease R compare
Psest_3962 +1.4 1.7 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3123 +1.4 2.2 dihydroorotase, homodimeric type compare
Psest_1896 +1.4 3.7 ABC-type sugar transport system, periplasmic component compare
Psest_1474 +1.3 0.9 phosphoribosylaminoimidazole synthetase compare
Psest_3377 +1.3 1.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2282 +1.3 1.4 Dihydroorotate dehydrogenase compare
Psest_1280 +1.3 9.1 TonB-dependent copper receptor compare
Psest_3112 +1.3 3.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1888 +1.3 1.5 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2020 +1.3 2.2 Uncharacterized protein involved in purine metabolism compare
Psest_1518 +1.3 2.0 tRNA_Ser_CGA compare
Psest_2419 +1.3 3.0 AraC-type DNA-binding domain-containing proteins compare
Psest_1772 +1.3 2.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3216 +1.3 10.3 diguanylate cyclase (GGDEF) domain compare
Psest_3158 +1.3 1.4 hypothetical protein compare
Psest_0174 +1.3 1.3 Uncharacterized protein conserved in bacteria compare
Psest_3398 +1.3 2.5 large conductance mechanosensitive channel protein compare
Psest_0079 +1.3 2.4 hypothetical protein compare
Psest_4393 +1.3 3.5 Capsule polysaccharide export protein compare
Psest_3322 +1.3 9.6 TIGR02099 family protein compare
Psest_3339 +1.3 4.5 Signal transduction histidine kinase compare
Psest_1871 +1.2 5.2 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_0681 +1.2 5.0 DNA mismatch repair protein MutL compare
Psest_1099 +1.2 7.2 Type I restriction-modification system methyltransferase subunit compare
Psest_3413 +1.2 3.3 hypothetical protein compare
Psest_1006 +1.2 3.9 dTDP-4-dehydrorhamnose reductase compare
Psest_0956 +1.2 5.4 Transcriptional regulators compare
Psest_2570 +1.2 1.5 Transcriptional regulator compare
Psest_1421 +1.2 2.3 Glutathione S-transferase compare
Psest_3047 +1.2 1.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0442 +1.2 0.8 ATPases of the AAA+ class compare
Psest_3950 +1.2 3.0 D-tyrosyl-tRNA(Tyr) deacylase compare
Psest_3367 +1.2 1.6 translation initation factor SUI1, putative, prokaryotic compare
Psest_2875 +1.2 3.7 DNA mismatch repair protein MutS compare
Psest_0192 +1.2 6.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4164 +1.2 1.5 flagellar biosynthetic protein FliS compare
Psest_3146 +1.2 1.1 hypothetical protein compare
Psest_2939 +1.2 1.2 Predicted membrane protein compare
Psest_0281 +1.2 4.0 Dynamin family. compare
Psest_1920 +1.2 1.0 Uncharacterized protein conserved in bacteria compare
Psest_4199 +1.2 3.5 general secretion pathway protein H compare
Psest_1180 +1.2 2.6 hydroxypyruvate isomerase compare
Psest_3533 +1.2 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2502 +1.1 3.2 Uncharacterized protein conserved in bacteria compare
Psest_3178 +1.1 2.2 formyltetrahydrofolate deformylase compare
Psest_2067 +1.1 1.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1860 +1.1 2.2 Uncharacterized conserved protein compare
Psest_1671 +1.1 2.2 DNA internalization-related competence protein ComEC/Rec2 compare
Psest_2123 +1.1 1.6 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3518 +1.1 1.0 Transcriptional regulators compare
Psest_2935 +1.1 1.7 hypothetical protein compare
Psest_3800 +1.1 2.8 3-hydroxyacyl-CoA dehydrogenase compare
Psest_1843 +1.1 1.4 Uncharacterized Fe-S protein compare
Psest_0224 +1.1 2.7 Transcriptional regulator compare
Psest_2621 +1.1 2.6 TadE-like protein. compare
Psest_0765 +1.1 1.8 hypothetical protein compare
Psest_1076 +1.1 1.6 acetyl-CoA acetyltransferases compare
Psest_1162 +1.1 1.8 Spermidine synthase compare
Psest_0559 +1.1 2.7 Sortase and related acyltransferases compare
Psest_2775 +1.1 2.3 Glycerol-3-phosphate dehydrogenase compare
Psest_2029 +1.1 3.7 Putative arginyl-tRNA:protein arginylyltransferase compare
Psest_3351 +1.1 2.9 peptide chain release factor 3 compare
Psest_0757 +1.1 1.5 hypothetical protein compare
Psest_2016 +1.0 1.9 hypothetical protein compare
Psest_2565 +1.0 1.5 Transcriptional regulator compare
Psest_2474 +1.0 2.7 AraC-type DNA-binding domain-containing proteins compare
Psest_0877 +1.0 2.2 Restriction endonuclease compare
Psest_2104 +1.0 1.0 IscR-regulated protein YhgI compare
Psest_1259 +1.0 3.5 23S rRNA m2A2503 methyltransferase compare
Psest_1013 +1.0 0.7 phosphoribosylamine--glycine ligase compare
Psest_2092 +1.0 2.0 hypothetical protein compare
Psest_3437 +1.0 1.6 diguanylate cyclase (GGDEF) domain compare
Psest_0823 +1.0 0.9 Transcriptional regulators compare
Psest_1327 +1.0 4.3 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_3556 +1.0 1.6 2'-5' RNA ligase compare
Psest_3201 +1.0 1.8 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
Psest_2912 +1.0 2.5 Uncharacterized conserved protein compare
Psest_2082 +1.0 3.5 Predicted aminoglycoside phosphotransferase compare
Psest_1598 +1.0 1.7 heavy metal response regulator compare
Psest_0016 +1.0 2.2 ectoine/hydroxyectoine ABC transporter, ATP-binding protein compare
Psest_2100 +1.0 1.6 Predicted acyltransferases compare
Psest_0852 +1.0 1.9 glucose-6-phosphate 1-dehydrogenase compare
Psest_0929 +1.0 2.5 ABC-type proline/glycine betaine transport systems, periplasmic components compare
Psest_1554 +1.0 1.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_4241 +1.0 1.7 hypothetical protein compare
Psest_1179 +1.0 1.4 2-hydroxy-3-oxopropionate reductase compare
Psest_3166 +1.0 5.3 Superfamily II DNA and RNA helicases compare
Psest_4405 +1.0 1.5 hypothetical protein compare
Psest_4004 +1.0 2.2 Uncharacterized conserved protein compare


Specific Phenotypes

For 27 genes in this experiment

For carbon source Sodium propionate in Pseudomonas stutzeri RCH2

For carbon source Sodium propionate across organisms