Experiment set10H4 for Pseudomonas stutzeri RCH2

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3944 -7.7 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0508 -6.9 -9.5 gamma-glutamyl phosphate reductase compare
Psest_0153 -6.5 -10.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3647 -6.5 -6.3 Indole-3-glycerol phosphate synthase compare
Psest_1895 -6.3 -10.5 Signal transduction histidine kinase compare
Psest_0279 -6.3 -7.4 methionine biosynthesis protein MetW compare
Psest_2591 -6.2 -4.3 3-isopropylmalate dehydratase, large subunit compare
Psest_0152 -6.2 -9.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_0155 -6.2 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3866 -6.1 -19.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3650 -6.0 -16.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3299 -6.0 -12.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1898 -5.9 -15.7 ABC-type sugar transport system, permease component compare
Psest_3864 -5.9 -15.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2590 -5.9 -1.9 3-isopropylmalate dehydratase, small subunit compare
Psest_0853 -5.9 -5.7 6-phosphogluconolactonase compare
Psest_2578 -5.8 -16.0 O-succinylhomoserine sulfhydrylase compare
Psest_3384 -5.8 -10.4 glutamate 5-kinase compare
Psest_1897 -5.7 -19.8 ABC-type sugar transport systems, permease components compare
Psest_3226 -5.6 -1.9 Predicted membrane protein compare
Psest_1896 -5.5 -6.6 ABC-type sugar transport system, periplasmic component compare
Psest_3648 -5.5 -12.3 anthranilate phosphoribosyltransferase compare
Psest_2584 -5.5 -8.3 Phosphoribosylanthranilate isomerase compare
Psest_3298 -5.4 -15.2 histidinol dehydrogenase compare
Psest_0062 -5.4 -15.1 tryptophan synthase, alpha subunit compare
Psest_0063 -5.2 -13.0 tryptophan synthase, beta subunit compare
Psest_0326 -5.2 -16.2 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0280 -5.1 -15.6 homoserine O-acetyltransferase compare
Psest_0849 -5.1 -19.3 6-phosphogluconate dehydratase compare
Psest_1473 -5.1 -8.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0687 -5.0 -12.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3649 -4.8 -13.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0313 -4.8 -8.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0855 -4.8 -9.7 NAD-dependent aldehyde dehydrogenases compare
Psest_0852 -4.6 -9.5 glucose-6-phosphate 1-dehydrogenase compare
Psest_0850 -4.6 -16.1 glucokinase, proteobacterial type compare
Psest_3943 -4.6 -7.6 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0325 -4.5 -13.7 Putative threonine efflux protein compare
Psest_1899 -4.4 -6.9 ABC-type sugar transport systems, ATPase components compare
Psest_2589 -4.4 -13.3 3-isopropylmalate dehydrogenase compare
Psest_1037 -4.2 -5.7 acetolactate synthase, small subunit compare
Psest_3190 -3.9 -9.1 pyruvate kinase compare
Psest_2579 -3.6 -4.3 amidophosphoribosyltransferase compare
Psest_0999 -3.4 -2.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3818 -3.4 -11.1 endoribonuclease L-PSP, putative compare
Psest_0327 -3.3 -5.8 Transcriptional regulator compare
Psest_1772 -3.2 -7.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1295 -3.1 -8.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0489 -2.8 -1.9 phosphoserine phosphatase SerB compare
Psest_4088 -2.8 -5.6 Transcriptional regulators compare
Psest_2988 -2.6 -9.5 aspartate kinase, monofunctional class compare
Psest_4085 -2.6 -15.5 Biotin carboxylase compare
Psest_2333 -2.6 -1.8 Protein of unknown function (DUF3359). compare
Psest_4084 -2.6 -16.9 oxaloacetate decarboxylase alpha subunit compare
Psest_1686 -2.6 -7.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_4191 -2.6 -5.1 Transcriptional regulator compare
Psest_1013 -2.5 -1.7 phosphoribosylamine--glycine ligase compare
Psest_2067 -2.5 -2.0 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3998 -2.4 -9.9 glutamate--cysteine ligase compare
Psest_3810 -2.4 -1.6 orotate phosphoribosyltransferase compare
Psest_3766 -2.3 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_3159 -2.2 -6.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0969 -2.2 -3.0 transcription elongation factor GreA compare
Psest_3297 -2.2 -10.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2329 -2.2 -15.1 Transcriptional regulator compare
Psest_3322 -2.2 -18.3 TIGR02099 family protein compare
Psest_1474 -2.2 -2.1 phosphoribosylaminoimidazole synthetase compare
Psest_4086 -2.0 -10.5 Transcriptional regulator compare
Psest_2104 -2.0 -2.3 IscR-regulated protein YhgI compare
Psest_0442 -2.0 -2.7 ATPases of the AAA+ class compare
Psest_3960 -1.9 -2.7 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1496 -1.9 -1.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_3100 -1.9 -4.1 RNA polymerase sigma factor RpoE compare
Psest_3129 -1.9 -1.5 tyrosine recombinase XerD compare
Psest_2945 -1.9 -2.0 septum site-determining protein MinC compare
Psest_2975 -1.9 -4.3 tRNA_Arg_CCT compare
Psest_2775 -1.7 -3.9 Glycerol-3-phosphate dehydrogenase compare
Psest_2527 -1.7 -7.7 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1814 -1.7 -10.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2532 -1.6 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_1947 -1.6 -1.1 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0164 -1.5 -1.4 Glutaredoxin, GrxC family compare
Psest_4044 -1.5 -3.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1000 -1.5 -7.8 PAS domain S-box compare
Psest_4003 -1.5 -4.2 TIGR00153 family protein compare
Psest_1012 -1.5 -5.4 Signal transduction histidine kinase compare
Psest_0958 -1.4 -6.8 Oligoketide cyclase/lipid transport protein compare
Psest_1659 -1.4 -3.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2530 -1.3 -4.6 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1510 -1.3 -3.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0193 -1.2 -0.9 conserved hypothetical protein compare
Psest_1994 -1.2 -4.1 Amidases related to nicotinamidase compare
Psest_1974 -1.2 -3.4 integration host factor, alpha subunit compare
Psest_3123 -1.2 -2.8 dihydroorotase, homodimeric type compare
Psest_0411 -1.2 -7.5 biotin synthetase compare
Psest_1313 -1.2 -1.7 Uncharacterized conserved small protein compare
Psest_3862 -1.2 -8.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3178 -1.2 -3.2 formyltetrahydrofolate deformylase compare
Psest_2442 -1.1 -2.4 hypothetical protein compare
Psest_0740 -1.1 -1.9 Transcriptional regulator compare
Psest_1111 -1.1 -3.1 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_4298 -1.1 -1.3 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2810 -1.1 -4.4 5'/3'-nucleotidase SurE compare
Psest_2946 -1.1 -2.9 septum site-determining protein MinD compare
Psest_2585 -1.1 -1.2 pseudouridylate synthase I compare
Psest_1505 -1.1 -1.7 Organic radical activating enzymes compare
Psest_2088 -1.1 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1805 -1.1 -1.7 integration host factor, beta subunit compare
Psest_0170 -1.1 -4.1 5,10-methenyltetrahydrofolate synthetase compare
Psest_3816 -1.1 -1.5 DNA-directed RNA polymerase, omega subunit compare
Psest_0466 -1.0 -3.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3296 -1.0 -0.7 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_3910 -1.0 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2967 -1.0 -2.1 flagellar basal-body rod protein FlgC compare
Psest_3185 -1.0 -2.4 MoxR-like ATPases compare
Psest_0998 -1.0 -2.9 poly(A) polymerase compare
Psest_0208 -1.0 -6.3 Uncharacterized protein conserved in bacteria compare
Psest_1804 -0.9 -1.6 Superfamily II DNA and RNA helicases compare
Psest_2855 -0.9 -1.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1306 -0.9 -1.8 hypothetical protein compare
Psest_0412 -0.9 -5.9 8-amino-7-oxononanoate synthase compare
Psest_4343 -0.9 -2.6 Protein of unknown function (DUF3301). compare
Psest_3790 -0.9 -5.8 Cytochrome c5 compare
Psest_1277 -0.9 -6.3 2-isopropylmalate synthase, yeast type compare
Psest_0212 -0.9 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_2809 -0.9 -1.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1704 -0.9 -1.2 Dehydrogenases (flavoproteins) compare
Psest_1001 -0.9 -2.5 hypothetical protein compare
Psest_0417 -0.8 -2.0 Acyl-CoA dehydrogenases compare
Psest_2907 -0.8 -1.2 Protein of unknown function (DUF3618). compare
Psest_0359 -0.8 -1.7 Transcriptional regulators compare
Psest_3042 -0.8 -1.2 Nitrate reductase cytochrome c-type subunit compare
Psest_2531 -0.8 -5.7 cytochrome c oxidase accessory protein FixG compare
Psest_0814 -0.8 -2.1 MoxR-like ATPases compare
Psest_1282 -0.8 -1.3 Amidases related to nicotinamidase compare
Psest_2911 -0.8 -1.7 Protein of unknown function (DUF2945). compare
Psest_2331 -0.8 -4.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_0870 -0.8 -5.2 Alpha-glucosidase (EC 3.2.1.20) (from data) compare
Psest_0919 -0.8 -1.4 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_1725 -0.8 -6.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2719 -0.8 -1.7 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0306 -0.8 -5.9 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3890 -0.8 -1.4 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0760 -0.8 -2.8 Polyketide cyclase / dehydrase and lipid transport. compare
Psest_0207 -0.8 -2.3 hypothetical protein compare
Psest_1999 -0.8 -1.0 pseudouridine synthase compare
Psest_2048 -0.8 -0.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4405 -0.8 -1.0 hypothetical protein compare
Psest_0498 -0.7 -1.1 ribosome small subunit-dependent GTPase A compare
Psest_0511 -0.7 -1.3 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3191 -0.7 -1.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_3305 -0.7 -4.2 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1322 -0.7 -1.3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_3146 -0.7 -1.4 hypothetical protein compare
Psest_4219 -0.7 -1.8 DNA polymerase I compare
Psest_0795 -0.7 -1.9 ABC-type multidrug transport system, ATPase component compare
Psest_0538 -0.7 -6.7 Signal transduction histidine kinase compare
Psest_0413 -0.7 -3.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2083 -0.7 -2.1 Putative sterol carrier protein compare
Psest_3088 -0.7 -2.0 Protein of unknown function (DUF2905). compare
Psest_0744 -0.7 -0.8 Uncharacterized conserved protein compare
Psest_0294 -0.7 -2.5 Putative transcriptional regulator compare
Psest_0209 -0.7 -1.7 membrane protein AbrB duplication compare
Psest_3395 -0.7 -1.0 hypothetical protein compare
Psest_2768 -0.7 -1.5 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_2651 -0.7 -2.1 DNA topoisomerase I, bacterial compare
Psest_4042 -0.7 -1.0 hypothetical protein compare
Psest_1525 -0.7 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_4309 -0.7 -2.1 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_2321 -0.7 -3.4 methylisocitrate lyase compare
Psest_1292 -0.6 -3.8 monothiol glutaredoxin, Grx4 family compare
Psest_1008 -0.6 -1.0 hypothetical protein compare
Psest_2968 -0.6 -3.4 flagellar basal-body rod protein FlgB compare
Psest_3843 -0.6 -3.0 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0028 -0.6 -2.2 Coproporphyrinogen III oxidase compare
Psest_2047 -0.6 -0.9 Signal transduction histidine kinase compare
Psest_0693 -0.6 -5.5 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_0165 -0.6 -1.3 protein-export chaperone SecB compare
Psest_0175 -0.6 -3.4 Xaa-Pro aminopeptidase compare
Psest_1082 -0.6 -1.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0409 -0.6 -1.7 Putative homoserine kinase type II (protein kinase fold) compare
Psest_2712 -0.6 -2.0 Surface lipoprotein compare
Psest_3731 -0.6 -4.8 exopolyphosphatase compare
Psest_3449 -0.6 -1.6 DJ-1 family protein compare
Psest_3767 -0.6 -2.2 tyrosine recombinase XerC compare
Psest_3963 -0.6 -4.1 PAS domain S-box compare
Psest_0191 -0.6 -0.6 PAS domain S-box compare
Psest_3214 -0.6 -3.3 phosphate acetyltransferase compare
Psest_2325 -0.6 -3.5 alpha-L-glutamate ligase-related protein compare
Psest_3367 -0.6 -1.0 translation initation factor SUI1, putative, prokaryotic compare
Psest_3304 -0.6 -2.4 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0568 -0.6 -2.1 pseudouridine synthase compare
Psest_1226 -0.6 -1.8 hypothetical protein compare
Psest_2950 -0.6 -2.0 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_3809 -0.6 -2.5 hypothetical protein compare
Psest_1305 -0.6 -2.2 Heat shock protein compare
Psest_2037 -0.6 -3.4 uroporphyrin-III C-methyltransferase compare
Psest_2344 -0.6 -2.4 Methyl-accepting chemotaxis protein compare
Psest_0284 -0.6 -4.0 pyridoxal phosphate enzyme, YggS family compare
Psest_3044 -0.6 -2.8 deoxycytidine triphosphate deaminase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments

For carbon source D-Glucose across organisms