Experiment set10H39 for Pseudomonas stutzeri RCH2

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3944 -4.6 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_4086 -4.3 -7.1 Transcriptional regulator compare
Psest_2590 -4.2 -1.0 3-isopropylmalate dehydratase, small subunit compare
Psest_4085 -4.2 -9.8 Biotin carboxylase compare
Psest_3648 -4.0 -4.7 anthranilate phosphoribosyltransferase compare
Psest_3226 -3.9 -0.9 Predicted membrane protein compare
Psest_1640 -3.9 -10.9 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0508 -3.7 -6.6 gamma-glutamyl phosphate reductase compare
Psest_2578 -3.7 -8.2 O-succinylhomoserine sulfhydrylase compare
Psest_2320 -3.6 -5.0 2-methylcitrate synthase/citrate synthase II compare
Psest_0279 -3.6 -4.3 methionine biosynthesis protein MetW compare
Psest_3647 -3.5 -3.5 Indole-3-glycerol phosphate synthase compare
Psest_0062 -3.5 -7.2 tryptophan synthase, alpha subunit compare
Psest_0280 -3.5 -9.1 homoserine O-acetyltransferase compare
Psest_4084 -3.4 -9.4 oxaloacetate decarboxylase alpha subunit compare
Psest_3650 -3.4 -9.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3866 -3.3 -11.9 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0063 -3.3 -6.3 tryptophan synthase, beta subunit compare
Psest_3384 -3.2 -4.9 glutamate 5-kinase compare
Psest_3862 -3.1 -11.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2645 -3.1 -7.3 Transcriptional regulator compare
Psest_0181 -3.0 -6.4 glycine cleavage system T protein compare
Psest_0520 -3.0 -0.7 hypothetical protein compare
Psest_2088 -2.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_1167 -2.8 -0.9 hypothetical protein compare
Psest_2322 -2.8 -3.7 Transcriptional regulators compare
Psest_4088 -2.8 -1.9 Transcriptional regulators compare
Psest_1840 -2.7 -11.6 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_0326 -2.7 -12.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2232 -2.7 -8.9 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2122 -2.7 -0.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2584 -2.7 -3.0 Phosphoribosylanthranilate isomerase compare
Psest_0155 -2.7 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0153 -2.7 -8.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2136 -2.7 -8.5 Predicted homoserine dehydrogenase compare
Psest_2321 -2.7 -3.6 methylisocitrate lyase compare
Psest_0152 -2.7 -4.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_1635 -2.7 -13.9 Signal transduction histidine kinase compare
Psest_3864 -2.6 -10.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_4298 -2.6 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2333 -2.6 -0.9 Protein of unknown function (DUF3359). compare
Psest_1498 -2.6 -1.9 tol-pal system-associated acyl-CoA thioesterase compare
Psest_1813 -2.6 -9.2 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2325 -2.6 -8.6 alpha-L-glutamate ligase-related protein compare
Psest_1686 -2.6 -3.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3307 -2.5 -3.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2293 -2.5 -1.0 hypothetical protein compare
Psest_2324 -2.5 -13.7 hypothetical protein compare
Psest_0673 -2.5 -3.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_1837 -2.5 -7.8 Endoglucanase compare
Psest_0133 -2.5 -0.8 type VI secretion protein, VC_A0107 family compare
Psest_3298 -2.5 -8.9 histidinol dehydrogenase compare
Psest_3140 -2.5 -7.9 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_1082 -2.4 -1.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2260 -2.4 -11.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3304 -2.4 -1.7 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2589 -2.4 -7.4 3-isopropylmalate dehydrogenase compare
Psest_3303 -2.4 -2.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0993 -2.4 -5.3 Glucose-6-phosphate isomerase compare
Psest_3721 -2.4 -5.9 Malic enzyme compare
Psest_3306 -2.3 -2.3 conserved hypothetical integral membrane protein compare
Psest_3943 -2.3 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3305 -2.3 -2.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1557 -2.3 -9.4 Phosphoenolpyruvate carboxylase conserved
Psest_2708 -2.3 -8.3 transaldolase compare
Psest_0325 -2.3 -6.1 Putative threonine efflux protein compare
Psest_3732 -2.3 -6.0 polyphosphate kinase 1 compare
Psest_2712 -2.3 -1.6 Surface lipoprotein compare
Psest_1974 -2.2 -1.8 integration host factor, alpha subunit compare
Psest_2591 -2.2 -2.3 3-isopropylmalate dehydratase, large subunit compare
Psest_1819 -2.2 -15.3 Nucleoside-diphosphate-sugar epimerases compare
Psest_3299 -2.2 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2383 -2.2 -5.9 Predicted transcriptional regulators compare
Psest_2158 -2.2 -12.7 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_3323 -2.1 -4.1 ribonuclease, Rne/Rng family compare
Psest_0411 -2.1 -8.4 biotin synthetase compare
Psest_4134 -2.1 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3884 -2.1 -0.7 Signal transduction histidine kinase compare
Psest_3860 -2.1 -2.1 Predicted permeases compare
Psest_2975 -2.1 -2.1 tRNA_Arg_CCT compare
Psest_1509 -2.1 -6.8 quinolinate synthetase complex, A subunit compare
Psest_0506 -2.0 -3.7 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Psest_4286 -2.0 -6.8 Glutamine synthetase conserved
Psest_1691 -2.0 -2.2 aminodeoxychorismate lyase compare
Psest_0687 -2.0 -5.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0313 -2.0 -3.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3202 -2.0 -3.6 Flavodoxins compare
Psest_1302 -2.0 -3.2 Predicted thioesterase compare
Psest_3808 -2.0 -10.1 Protein of unknown function (DUF3360). compare
Psest_3828 -1.9 -1.1 zinc-binding alcohol dehydrogenase family protein compare
Psest_0609 -1.9 -1.0 hypothetical protein compare
Psest_0327 -1.8 -3.9 Transcriptional regulator compare
Psest_3191 -1.8 -2.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_1313 -1.8 -1.5 Uncharacterized conserved small protein compare
Psest_2316 -1.8 -8.7 phosphoenolpyruvate synthase compare
Psest_0718 -1.8 -2.1 nicotinate-nucleotide pyrophosphorylase compare
Psest_3174 -1.7 -10.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2066 -1.7 -0.6 ABC-type uncharacterized transport system, permease component compare
Psest_1814 -1.7 -10.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0814 -1.7 -2.0 MoxR-like ATPases compare
Psest_2850 -1.7 -0.9 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3189 -1.7 -2.8 hypothetical protein compare
Psest_3850 -1.7 -0.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2716 -1.7 -1.9 ABC-type multidrug transport system, ATPase component compare
Psest_1569 -1.6 -6.0 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0415 -1.6 -3.4 dethiobiotin synthase compare
Psest_1514 -1.6 -3.8 Glycine cleavage system regulatory protein compare
Psest_0719 -1.6 -5.2 Uncharacterized protein conserved in bacteria compare
Psest_3395 -1.6 -0.7 hypothetical protein compare
Psest_3200 -1.6 -4.4 Uncharacterized protein conserved in bacteria compare
Psest_4310 -1.6 -0.8 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0716 -1.6 -1.1 Protein of unknown function (DUF3094). compare
Psest_0306 -1.6 -9.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0196 -1.6 -8.2 Uncharacterized membrane protein, required for spore maturation in B.subtilis. conserved
Psest_0316 -1.5 -1.5 Cytochrome c556 compare
Psest_2848 -1.5 -2.2 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_0919 -1.5 -1.6 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_3673 -1.5 -6.5 Uncharacterized conserved protein conserved
Psest_0662 -1.5 -1.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3784 -1.5 -1.4 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_4083 -1.5 -8.6 Predicted permease compare
Psest_3674 -1.5 -8.6 Uncharacterized conserved protein conserved
Psest_1008 -1.5 -0.8 hypothetical protein compare
Psest_2778 -1.5 -2.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1473 -1.4 -4.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1306 -1.4 -1.1 hypothetical protein compare
Psest_3910 -1.4 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_4330 -1.4 -3.1 Protein of unknown function (DUF2909). compare
Psest_1805 -1.4 -0.6 integration host factor, beta subunit compare
Psest_1625 -1.4 -2.5 hypothetical protein compare
Psest_2726 -1.4 -1.1 Rhodanese-related sulfurtransferase compare
Psest_3206 -1.4 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_0412 -1.4 -5.9 8-amino-7-oxononanoate synthase compare
Psest_2999 -1.4 -3.1 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1457 -1.4 -1.1 FOG: Ankyrin repeat compare
Psest_3881 -1.3 -0.7 hypothetical protein compare
Psest_0538 -1.3 -10.2 Signal transduction histidine kinase compare
Psest_0209 -1.3 -1.1 membrane protein AbrB duplication compare
Psest_2748 -1.3 -1.1 Transcriptional regulator compare
Psest_1444 -1.3 -2.3 Curli production assembly/transport component CsgF. compare
Psest_0189 -1.3 -4.9 Negative regulator of beta-lactamase expression conserved
Psest_1075 -1.3 -3.6 Predicted transcriptional regulators compare
Psest_4243 -1.3 -1.3 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1775 -1.3 -3.0 Predicted ATPase (AAA+ superfamily) compare
Psest_2810 -1.3 -3.5 5'/3'-nucleotidase SurE compare
Psest_0119 -1.3 -1.2 hypothetical protein compare
Psest_4106 -1.3 -2.7 formate dehydrogenase, gamma subunit compare
Psest_0650 -1.3 -3.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_3697 -1.3 -1.2 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1588 -1.3 -3.3 Uncharacterized protein involved in copper resistance compare
Psest_1081 -1.3 -3.6 hypothetical protein compare
Psest_1535 -1.3 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_0744 -1.2 -0.6 Uncharacterized conserved protein compare
Psest_3672 -1.2 -7.2 Putative Ser protein kinase conserved
Psest_0248 -1.2 -4.5 Transcriptional regulator compare
Psest_0722 -1.2 -2.5 Predicted ATPase compare
Psest_2798 -1.2 -2.1 Truncated hemoglobins compare
Psest_0592 -1.2 -1.7 hypothetical protein compare
Psest_1295 -1.2 -2.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2091 -1.2 -2.4 Molecular chaperone (small heat shock protein) compare
Psest_3433 -1.2 -4.7 ATP-binding cassette protein, ChvD family compare
Psest_1960 -1.2 -2.0 Bacterial protein of unknown function (DUF903). compare
Psest_0759 -1.2 -0.8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_2317 -1.2 -5.5 Uncharacterized protein conserved in bacteria compare
Psest_1283 -1.2 -3.5 Membrane proteins related to metalloendopeptidases compare
Psest_0368 -1.2 -1.3 Transcriptional regulator compare
Psest_0284 -1.2 -7.1 pyridoxal phosphate enzyme, YggS family compare
Psest_1677 -1.2 -1.5 Protein-tyrosine-phosphatase compare
Psest_2950 -1.2 -2.6 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_1812 -1.1 -5.2 pseudaminic acid CMP-transferase compare
Psest_3812 -1.1 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1103 -1.1 -1.6 GTP-binding protein YchF compare
Psest_2437 -1.1 -2.1 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_0455 -1.1 -4.4 ADP-heptose:LPS heptosyltransferase compare
Psest_1878 -1.1 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4177 -1.1 -1.1 flagellar biosynthetic protein FliP compare
Psest_2268 -1.1 -2.0 Alcohol dehydrogenase, class IV compare
Psest_1868 -1.1 -3.1 yecA family protein compare
Psest_4221 -1.1 -2.2 homoserine kinase, Neisseria type compare
Psest_3995 -1.1 -1.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1774 -1.1 -1.2 Glutathione peroxidase compare
Psest_1872 -1.1 -2.1 selT/selW/selH selenoprotein domain compare
Psest_2434 -1.1 -1.8 Protein of unknown function (DUF2892). compare
Psest_3777 -1.1 -1.7 diguanylate cyclase (GGDEF) domain compare
Psest_1860 -1.1 -1.6 Uncharacterized conserved protein compare
Psest_0105 -1.1 -2.5 malonate decarboxylase, beta subunit compare
Psest_1050 -1.1 -6.3 Paraquat-inducible protein B compare
Psest_2923 -1.1 -1.1 hypothetical protein compare
Psest_1997 -1.1 -0.8 6-phosphogluconolactonase compare
Psest_0078 -1.1 -0.6 hypothetical protein compare
Psest_4080 -1.1 -1.9 Carbonic anhydrase compare
Psest_4222 -1.1 -4.5 Predicted Rossmann fold nucleotide-binding protein conserved
Psest_2072 -1.1 -3.9 Methyltransferase domain. compare
Psest_2565 -1.1 -1.1 Transcriptional regulator compare
Psest_1665 -1.1 -2.1 hypothetical protein compare
Psest_0732 -1.1 -1.7 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1849 -1.1 -2.5 Predicted glutamine amidotransferase compare
Psest_2017 -1.0 -1.6 Predicted acyltransferase compare
Psest_2557 -1.0 -1.5 Protein of unknown function (DUF2474). compare
Psest_4396 -1.0 -4.8 Site-specific recombinases, DNA invertase Pin homologs compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source Sodium propionate in Pseudomonas stutzeri RCH2

For carbon source Sodium propionate across organisms