Experiment set10H39 for Pseudomonas stutzeri RCH2

Compare to:

Sodium propionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Psest_3213 +8.5 29.5 acetate kinase compare
Psest_1055 +8.1 29.0 Saccharopine dehydrogenase and related proteins compare
Psest_3214 +7.8 37.4 phosphate acetyltransferase conserved
Psest_1054 +7.4 24.7 Diaminopimelate decarboxylase compare
Psest_4082 +7.0 14.9 hypothetical protein compare
Psest_2646 +4.5 6.8 SOS regulatory protein LexA compare
Psest_1249 +4.1 17.9 serine O-acetyltransferase compare
Psest_3573 +4.1 16.5 dTDP-4-dehydrorhamnose reductase compare
Psest_3637 +4.1 4.7 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_1704 +4.1 5.1 Dehydrogenases (flavoproteins) compare
Psest_2864 +3.9 13.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2650 +3.9 12.6 hypothetical protein compare
Psest_3762 +3.9 8.8 iron donor protein CyaY compare
Psest_1527 +3.8 24.3 Na+/proline symporter compare
Psest_0417 +3.8 10.5 Acyl-CoA dehydrogenases compare
Psest_4406 +3.7 2.8 hypothetical protein compare
Psest_1679 +3.5 7.4 ribonuclease, Rne/Rng family compare
Psest_3710 +3.2 25.3 glutamate synthase small subunit family protein, proteobacterial compare
Psest_1144 +3.2 2.2 AmpG-related permease compare
Psest_3711 +3.2 26.1 Glutamate synthase domain 2 compare
Psest_0309 +3.2 2.0 RND family efflux transporter, MFP subunit compare
Psest_1870 +3.0 6.5 Transcriptional regulators compare
Psest_0191 +2.9 4.0 PAS domain S-box compare
Psest_3664 +2.9 4.7 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3927 +2.9 10.1 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3296 +2.9 2.0 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_0170 +2.8 11.0 5,10-methenyltetrahydrofolate synthetase compare
Psest_3991 +2.7 1.3 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_3047 +2.7 3.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1948 +2.7 15.4 Ribosome modulation factor compare
Psest_0498 +2.7 1.8 ribosome small subunit-dependent GTPase A compare
Psest_1012 +2.6 6.4 Signal transduction histidine kinase compare
Psest_0225 +2.6 1.6 Predicted permease, DMT superfamily compare
Psest_4191 +2.5 2.4 Transcriptional regulator compare
Psest_0541 +2.5 11.3 succinate CoA transferases compare
Psest_2643 +2.4 2.2 Beta-glucosidase-related glycosidases compare
Psest_3113 +2.3 3.3 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3872 +2.3 12.3 FAD/FMN-containing dehydrogenases compare
Psest_2944 +2.1 1.4 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_4064 +2.1 1.5 Lactate dehydrogenase and related dehydrogenases compare
Psest_1947 +2.1 1.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2285 +2.1 6.8 ATP-dependent protease La compare
Psest_0218 +2.1 5.2 Acyl-CoA hydrolase compare
Psest_4314 +2.0 2.1 ABC-type metal ion transport system, ATPase component compare
Psest_0028 +2.0 3.0 Coproporphyrinogen III oxidase compare
Psest_3112 +2.0 4.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3367 +2.0 3.3 translation initation factor SUI1, putative, prokaryotic compare
Psest_4078 +2.0 5.5 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0192 +1.9 10.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1999 +1.9 2.4 pseudouridine synthase compare
Psest_1879 +1.9 2.4 Trk-type K+ transport systems, membrane components compare
Psest_2988 +1.9 8.6 aspartate kinase, monofunctional class compare
Psest_0529 +1.9 7.1 Putative Mg2+ and Co2+ transporter CorC compare
Psest_2719 +1.9 1.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3458 +1.9 4.9 hypothetical protein compare
Psest_3351 +1.8 5.1 peptide chain release factor 3 compare
Psest_2018 +1.8 4.2 Uncharacterized conserved protein compare
Psest_2724 +1.8 2.0 hypothetical protein compare
Psest_2025 +1.8 2.2 cold shock domain protein CspD compare
Psest_4393 +1.8 5.9 Capsule polysaccharide export protein compare
Psest_2714 +1.8 2.7 7-cyano-7-deazaguanine reductase compare
Psest_1118 +1.7 1.2 Predicted Fe-S-cluster oxidoreductase compare
Psest_3670 +1.7 9.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_1037 +1.7 2.7 acetolactate synthase, small subunit compare
Psest_1951 +1.7 2.8 Uncharacterized protein conserved in bacteria compare
Psest_1248 +1.7 5.8 RNA methyltransferase, TrmH family, group 1 compare
Psest_1510 +1.7 2.3 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1783 +1.7 1.8 Predicted transporter component compare
Psest_0691 +1.6 10.1 ribonuclease R compare
Psest_2651 +1.6 6.0 DNA topoisomerase I, bacterial compare
Psest_0041 +1.6 2.0 Uncharacterized protein conserved in bacteria compare
Psest_1242 +1.6 2.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1462 +1.6 3.9 3-oxoacyl-[acyl-carrier-protein] synthase III compare
Psest_2703 +1.6 1.2 ATPases involved in chromosome partitioning compare
Psest_0681 +1.6 4.0 DNA mismatch repair protein MutL compare
Psest_3537 +1.6 7.2 hypothetical protein compare
Psest_4044 +1.6 1.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1508 +1.5 7.1 succinate CoA transferases conserved
Psest_1031 +1.5 6.6 Uncharacterized protein conserved in bacteria compare
Psest_3958 +1.5 2.7 Predicted Fe-S-cluster oxidoreductase compare
Psest_2092 +1.5 2.3 hypothetical protein compare
Psest_3136 +1.5 4.2 Putative Mg2+ and Co2+ transporter CorB compare
Psest_1804 +1.5 1.0 Superfamily II DNA and RNA helicases compare
Psest_3092 +1.4 2.4 ribonuclease III, bacterial compare
Psest_3731 +1.4 8.7 exopolyphosphatase compare
Psest_1653 +1.4 9.9 transcription-repair coupling factor (mfd) compare
Psest_0266 +1.4 2.9 thiamine biosynthesis protein ThiS compare
Psest_2349 +1.4 2.8 urea carboxylase-associated protein 1 compare
Psest_4141 +1.4 4.8 3-carboxymuconate cyclase compare
Psest_0353 +1.3 3.9 Methyl-accepting chemotaxis protein compare
Psest_2500 +1.3 4.8 hypothetical protein compare
Psest_2243 +1.3 0.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1366 +1.3 0.9 hypothetical protein compare
Psest_4288 +1.3 8.2 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) compare
Psest_1639 +1.3 2.3 23S rRNA (uracil-5-)-methyltransferase RumA compare
Psest_4256 +1.3 2.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1016 +1.3 1.4 putative TIM-barrel protein, nifR3 family compare
Psest_2401 +1.3 1.1 Uncharacterized conserved protein compare
Psest_2786 +1.3 1.5 Domain of unknown function (DUF3597). compare
Psest_0466 +1.3 2.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1854 +1.3 1.8 Domain of Unknown Function (DUF748). compare
Psest_3937 +1.3 1.7 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1940 +1.3 3.0 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_3322 +1.2 10.2 TIGR02099 family protein compare
Psest_1661 +1.2 0.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1120 +1.2 3.3 uracil phosphoribosyltransferase compare
Psest_1315 +1.2 1.9 hypothetical protein compare
Psest_3707 +1.2 2.5 Transcriptional regulator compare
Psest_1773 +1.2 1.0 methionine-R-sulfoxide reductase compare
Psest_1280 +1.2 8.5 TonB-dependent copper receptor compare
Psest_2463 +1.2 1.8 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_0956 +1.2 5.6 Transcriptional regulators compare
Psest_1882 +1.2 1.8 Signal transduction histidine kinase compare
Psest_1474 +1.2 0.8 phosphoribosylaminoimidazole synthetase compare
Psest_1417 +1.2 1.5 hypothetical protein compare
Psest_1731 +1.2 1.9 flagellar biosynthetic protein FliO compare
Psest_4197 +1.2 2.2 general secretion pathway protein J compare
Psest_3809 +1.2 2.9 hypothetical protein compare
Psest_1142 +1.2 1.5 Uncharacterized protein conserved in bacteria compare
Psest_2523 +1.2 3.2 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Psest_3185 +1.2 2.1 MoxR-like ATPases compare
Psest_1506 +1.2 4.8 queuosine biosynthesis protein QueC compare
Psest_1180 +1.1 3.0 hydroxypyruvate isomerase compare
Psest_3810 +1.1 0.8 orotate phosphoribosyltransferase compare
Psest_1647 +1.1 1.9 Lhr-like helicases compare
Psest_1725 +1.1 7.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1554 +1.1 2.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_4345 +1.1 5.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3250 +1.1 2.5 Rho termination factor, N-terminal domain. compare
Psest_3339 +1.1 5.0 Signal transduction histidine kinase compare
Psest_3840 +1.1 2.0 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3960 +1.1 1.4 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0678 +1.1 1.9 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_1370 +1.1 3.3 hypothetical protein compare
Psest_1241 +1.1 4.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_1768 +1.1 1.3 thiopurine S-methyltransferase, Se/Te detoxification family compare
Psest_1871 +1.1 5.3 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_2873 +1.1 1.2 competence/damage-inducible protein CinA C-terminal domain compare
Psest_3932 +1.1 3.5 nitrogen regulation protein NR(I) compare
Psest_0393 +1.1 4.5 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3838 +1.1 2.3 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_2912 +1.1 2.9 Uncharacterized conserved protein compare
Psest_1975 +1.1 4.5 Predicted transcriptional regulators compare
Psest_2029 +1.1 3.5 Putative arginyl-tRNA:protein arginylyltransferase compare
Psest_0442 +1.1 0.7 ATPases of the AAA+ class compare
Psest_2001 +1.1 0.7 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0559 +1.1 2.7 Sortase and related acyltransferases compare
Psest_1522 +1.0 1.9 hypothetical protein compare
Psest_3998 +1.0 5.3 glutamate--cysteine ligase compare
Psest_3216 +1.0 8.3 diguanylate cyclase (GGDEF) domain compare
Psest_1327 +1.0 4.5 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_3178 +1.0 2.8 formyltetrahydrofolate deformylase compare
Psest_0950 +1.0 2.2 hypothetical protein compare
Psest_0161 +1.0 1.4 Membrane-bound metallopeptidase compare
Psest_2892 +1.0 1.7 Transcriptional regulator compare
Psest_0575 +1.0 0.8 HrpA-like helicases compare
Psest_1111 +1.0 1.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1221 +1.0 2.5 Uncharacterized conserved protein compare
Psest_1414 +1.0 2.4 Lactoylglutathione lyase and related lyases compare
Psest_3187 +1.0 3.0 hypothetical protein compare
Psest_1663 +1.0 1.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2502 +1.0 3.2 Uncharacterized protein conserved in bacteria compare
Psest_3173 +1.0 2.1 Uncharacterized protein conserved in bacteria compare
Psest_0756 +1.0 2.0 alkylhydroperoxidase AhpD family core domain compare
Psest_3488 +1.0 1.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0281 +1.0 4.5 Dynamin family. compare
Psest_1099 +1.0 7.0 Type I restriction-modification system methyltransferase subunit compare
Psest_3540 +1.0 2.5 hypothetical protein compare
Psest_1920 +1.0 0.8 Uncharacterized protein conserved in bacteria compare
Psest_3770 +1.0 2.0 secondary thiamine-phosphate synthase enzyme compare
Psest_2896 +1.0 2.1 hypothetical protein compare
Psest_0040 +1.0 2.0 Protein of unknown function (DUF2934). compare
Psest_2119 +0.9 1.6 Glycine/D-amino acid oxidases (deaminating) compare
Psest_1724 +0.9 2.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2240 +0.9 1.5 hypothetical protein compare
Psest_0988 +0.9 1.3 Protein of unknown function (DUF2845). compare
Psest_2772 +0.9 3.3 MIP family channel proteins compare
Psest_2730 +0.9 1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1792 +0.9 1.8 RND family efflux transporter, MFP subunit compare
Psest_2909 +0.9 2.5 hypothetical protein compare
Psest_2229 +0.9 1.2 Uncharacterized protein conserved in bacteria compare
Psest_3123 +0.9 0.9 dihydroorotase, homodimeric type compare
Psest_0619 +0.9 2.9 cation diffusion facilitator family transporter compare
Psest_0423 +0.9 3.0 hypothetical protein compare
Psest_2423 +0.9 2.5 Uncharacterized conserved protein compare
Psest_1013 +0.9 0.9 phosphoribosylamine--glycine ligase compare
Psest_0061 +0.9 1.5 hypothetical protein compare
Psest_3045 +0.9 1.5 Cold shock proteins compare
Psest_1707 +0.9 1.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3340 +0.9 2.8 Predicted periplasmic/secreted protein compare
Psest_2449 +0.9 1.9 Predicted membrane protein compare
Psest_1750 +0.9 1.5 Protein of unknown function (DUF2802). compare
Psest_1397 +0.9 2.3 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_0795 +0.9 0.8 ABC-type multidrug transport system, ATPase component compare
Psest_1602 +0.9 1.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1512 +0.9 3.6 Predicted permease compare
Psest_3476 +0.9 0.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2331 +0.9 4.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_1261 +0.9 1.9 Uncharacterized protein conserved in bacteria compare
Psest_0797 +0.9 2.2 Predicted lipoprotein involved in nitrous oxide reduction compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source Sodium propionate in Pseudomonas stutzeri RCH2

For carbon source Sodium propionate across organisms