Experiment set10H36 for Pseudomonas stutzeri RCH2

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3648 -6.8 -8.1 anthranilate phosphoribosyltransferase compare
Psest_0508 -6.7 -10.2 gamma-glutamyl phosphate reductase compare
Psest_3866 -6.3 -18.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3944 -6.3 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0279 -6.0 -8.3 methionine biosynthesis protein MetW compare
Psest_3299 -5.8 -13.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2590 -5.8 -1.9 3-isopropylmalate dehydratase, small subunit compare
Psest_0993 -5.7 -8.7 Glucose-6-phosphate isomerase compare
Psest_2578 -5.6 -15.5 O-succinylhomoserine sulfhydrylase compare
Psest_3384 -5.6 -10.1 glutamate 5-kinase compare
Psest_0152 -5.6 -7.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_3298 -5.6 -14.4 histidinol dehydrogenase compare
Psest_2584 -5.5 -6.6 Phosphoribosylanthranilate isomerase compare
Psest_0153 -5.5 -15.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3650 -5.5 -16.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0687 -5.4 -9.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3647 -5.3 -8.3 Indole-3-glycerol phosphate synthase compare
Psest_0326 -5.3 -17.9 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0063 -5.3 -14.6 tryptophan synthase, beta subunit compare
Psest_0855 -5.3 -8.9 NAD-dependent aldehyde dehydrogenases compare
Psest_0280 -5.3 -19.1 homoserine O-acetyltransferase compare
Psest_0155 -5.2 -7.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3864 -5.0 -15.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0852 -5.0 -10.1 glucose-6-phosphate 1-dehydrogenase compare
Psest_0062 -4.8 -14.7 tryptophan synthase, alpha subunit compare
Psest_0313 -4.8 -7.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1037 -4.5 -4.2 acetolactate synthase, small subunit compare
Psest_3943 -4.5 -7.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2591 -4.3 -5.3 3-isopropylmalate dehydratase, large subunit compare
Psest_0325 -4.2 -13.6 Putative threonine efflux protein compare
Psest_2589 -4.2 -11.8 3-isopropylmalate dehydrogenase compare
Psest_2772 -3.7 -4.4 MIP family channel proteins compare
Psest_3129 -3.6 -2.3 tyrosine recombinase XerD compare
Psest_2579 -3.6 -4.3 amidophosphoribosyltransferase compare
Psest_3960 -3.5 -2.3 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_4273 -3.5 -7.5 Lysophospholipase compare
Psest_1496 -3.3 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_2773 -3.2 -5.8 glycerol kinase compare
Psest_3190 -3.0 -9.0 pyruvate kinase compare
Psest_2775 -2.9 -2.8 Glycerol-3-phosphate dehydrogenase compare
Psest_0327 -2.8 -5.2 Transcriptional regulator compare
Psest_3818 -2.8 -10.4 endoribonuclease L-PSP, putative compare
Psest_3146 -2.8 -3.1 hypothetical protein compare
Psest_0489 -2.8 -1.9 phosphoserine phosphatase SerB compare
Psest_1772 -2.7 -5.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0284 -2.6 -15.1 pyridoxal phosphate enzyme, YggS family compare
Psest_0297 -2.5 -3.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1295 -2.5 -8.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3159 -2.5 -5.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3100 -2.5 -3.8 RNA polymerase sigma factor RpoE compare
Psest_1013 -2.3 -2.2 phosphoribosylamine--glycine ligase compare
Psest_3810 -2.3 -1.6 orotate phosphoribosyltransferase compare
Psest_4086 -2.2 -11.3 Transcriptional regulator compare
Psest_1474 -2.1 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_1012 -2.1 -6.3 Signal transduction histidine kinase compare
Psest_1473 -2.0 -8.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3226 -2.0 -1.7 Predicted membrane protein compare
Psest_0164 -2.0 -1.6 Glutaredoxin, GrxC family compare
Psest_4085 -2.0 -13.6 Biotin carboxylase compare
Psest_0170 -1.9 -9.1 5,10-methenyltetrahydrofolate synthetase compare
Psest_4088 -1.9 -4.2 Transcriptional regulators compare
Psest_3297 -1.8 -10.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0853 -1.8 -3.2 6-phosphogluconolactonase compare
Psest_4084 -1.8 -11.6 oxaloacetate decarboxylase alpha subunit compare
Psest_3289 -1.8 -8.0 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0491 -1.8 -9.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3649 -1.8 -8.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0520 -1.8 -1.3 hypothetical protein compare
Psest_4191 -1.7 -4.3 Transcriptional regulator compare
Psest_1704 -1.7 -1.6 Dehydrogenases (flavoproteins) compare
Psest_0300 -1.7 -8.9 Methyl-accepting chemotaxis protein compare
Psest_3286 -1.7 -5.5 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_3766 -1.7 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3123 -1.6 -2.8 dihydroorotase, homodimeric type compare
Psest_3288 -1.6 -8.7 type IV-A pilus assembly ATPase PilB compare
Psest_3287 -1.6 -5.1 Type II secretory pathway, component PulF compare
Psest_2945 -1.6 -1.7 septum site-determining protein MinC compare
Psest_2946 -1.6 -4.1 septum site-determining protein MinD compare
Psest_3719 -1.5 -9.8 type IV pilus assembly protein PilM compare
Psest_2757 -1.5 -2.0 hypothetical protein compare
Psest_3715 -1.5 -11.9 type IV pilus secretin (or competence protein) PilQ compare
Psest_3395 -1.5 -1.7 hypothetical protein compare
Psest_0285 -1.5 -7.8 pilus retraction protein PilT compare
Psest_0705 -1.4 -9.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0706 -1.4 -7.9 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_4005 -1.4 -4.7 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_3910 -1.4 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1947 -1.4 -1.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2253 -1.4 -4.2 small redox-active disulfide protein 2 compare
Psest_3809 -1.4 -4.4 hypothetical protein compare
Psest_3375 -1.4 -5.6 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1663 -1.4 -4.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3806 -1.4 -4.8 Phosphomannomutase compare
Psest_4044 -1.3 -3.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0442 -1.3 -2.9 ATPases of the AAA+ class compare
Psest_2586 -1.3 -9.9 FimV N-terminal domain compare
Psest_3304 -1.3 -4.0 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0024 -1.3 -6.6 LysM domain. compare
Psest_0357 -1.3 -2.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1466 -1.2 -4.4 transcriptional regulator, Spx/MgsR family compare
Psest_2714 -1.2 -2.0 7-cyano-7-deazaguanine reductase compare
Psest_4219 -1.2 -2.1 DNA polymerase I compare
Psest_2651 -1.2 -3.6 DNA topoisomerase I, bacterial compare
Psest_2708 -1.2 -7.0 transaldolase compare
Psest_3716 -1.2 -6.9 Tfp pilus assembly protein PilP compare
Psest_0417 -1.1 -2.5 Acyl-CoA dehydrogenases compare
Psest_0066 -1.1 -2.1 Protein of unknown function (DUF3060). compare
Psest_2719 -1.1 -1.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0191 -1.1 -1.2 PAS domain S-box compare
Psest_1260 -1.1 -4.4 type IV pilus biogenesis/stability protein PilW compare
Psest_1695 -1.1 -2.9 Tfp pilus assembly protein PilZ compare
Psest_2809 -1.1 -2.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3717 -1.1 -3.3 Tfp pilus assembly protein PilO compare
Psest_3305 -1.1 -5.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0498 -1.1 -1.4 ribosome small subunit-dependent GTPase A compare
Psest_1724 -1.1 -2.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1907 -1.0 -1.6 hypothetical protein compare
Psest_3307 -1.0 -4.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2718 -1.0 -1.3 hypothetical protein compare
Psest_2545 -1.0 -2.1 recombination protein RecR compare
Psest_2988 -1.0 -3.8 aspartate kinase, monofunctional class compare
Psest_0248 -1.0 -5.1 Transcriptional regulator compare
Psest_3303 -1.0 -3.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3247 -1.0 -1.4 Uncharacterized membrane protein compare
Psest_3419 -1.0 -5.0 Predicted transcriptional regulators compare
Psest_3963 -1.0 -6.1 PAS domain S-box compare
Psest_1056 -1.0 -2.6 2-isopropylmalate synthase, bacterial type compare
Psest_3902 -1.0 -2.3 hypothetical protein compare
Psest_0193 -1.0 -0.7 conserved hypothetical protein compare
Psest_1506 -1.0 -4.4 queuosine biosynthesis protein QueC compare
Psest_3767 -1.0 -3.4 tyrosine recombinase XerC compare
Psest_0707 -0.9 -4.2 MYND finger. compare
Psest_3045 -0.9 -1.9 Cold shock proteins compare
Psest_3573 -0.9 -3.2 dTDP-4-dehydrorhamnose reductase compare
Psest_3718 -0.9 -3.7 Tfp pilus assembly protein PilN compare
Psest_1058 -0.9 -2.1 ribosomal-protein-alanine acetyltransferase compare
Psest_3731 -0.9 -6.5 exopolyphosphatase compare
Psest_4345 -0.9 -5.1 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3670 -0.9 -5.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3296 -0.9 -0.6 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_1163 -0.9 -2.4 diguanylate cyclase (GGDEF) domain compare
Psest_0277 -0.9 -1.3 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_2872 -0.9 -1.6 protein RecA compare
Psest_1480 -0.9 -1.5 arsenate reductase (glutaredoxin) compare
Psest_3998 -0.9 -4.3 glutamate--cysteine ligase compare
Psest_3872 -0.9 -4.8 FAD/FMN-containing dehydrogenases compare
Psest_3306 -0.9 -3.1 conserved hypothetical integral membrane protein compare
Psest_0411 -0.9 -5.1 biotin synthetase compare
Psest_3373 -0.8 -3.3 Tfp pilus assembly protein PilX compare
Psest_2605 -0.8 -2.3 transcriptional activator RfaH compare
Psest_3374 -0.8 -5.5 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_2158 -0.8 -6.5 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_0445 -0.8 -5.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1479 -0.8 -2.8 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_3080 -0.8 -1.3 AraC-type DNA-binding domain-containing proteins compare
Psest_1204 -0.8 -1.9 Transcriptional regulators compare
Psest_0697 -0.8 -1.9 ribosomal protein L9 compare
Psest_3180 -0.8 -4.8 Exonuclease I compare
Psest_2845 -0.8 -4.6 [Protein-PII] uridylyltransferase compare
Psest_1118 -0.8 -1.1 Predicted Fe-S-cluster oxidoreductase compare
Psest_1974 -0.8 -2.0 integration host factor, alpha subunit compare
Psest_4274 -0.8 -2.1 hypothetical protein compare
Psest_1528 -0.8 -2.3 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Psest_4310 -0.8 -1.3 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1979 -0.8 -2.7 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Psest_3168 -0.8 -1.4 Molybdopterin converting factor, large subunit compare
Psest_0302 -0.8 -5.8 Chemotaxis protein histidine kinase and related kinases compare
Psest_3828 -0.7 -1.5 zinc-binding alcohol dehydrogenase family protein compare
Psest_1242 -0.7 -1.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0737 -0.7 -0.8 Cu(I)-responsive transcriptional regulator compare
Psest_2648 -0.7 -1.9 hypothetical protein compare
Psest_2855 -0.7 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0708 -0.7 -1.2 outer membrane assembly lipoprotein YfiO compare
Psest_3458 -0.7 -2.4 hypothetical protein compare
Psest_1491 -0.7 -2.0 Cold shock proteins compare
Psest_0257 -0.7 -1.9 Predicted Zn-dependent peptidases compare
Psest_4097 -0.7 -4.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1139 -0.7 -3.0 PAS domain S-box compare
Psest_2643 -0.7 -1.6 Beta-glucosidase-related glycosidases compare
Psest_3899 -0.7 -2.7 Predicted phosphoribosyltransferases compare
Psest_0298 -0.7 -2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1149 -0.7 -1.8 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_3973 -0.7 -1.1 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_3128 -0.7 -2.0 Protein-disulfide isomerase compare
Psest_1888 -0.7 -1.0 Sua5/YciO/YrdC/YwlC family protein compare
Psest_1752 -0.7 -1.3 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0020 -0.7 -3.1 K+ transport systems, NAD-binding component compare
Psest_2712 -0.7 -2.0 Surface lipoprotein compare
Psest_3323 -0.7 -3.6 ribonuclease, Rne/Rng family compare
Psest_0334 -0.7 -1.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1595 -0.7 -1.1 Copper chaperone compare
Psest_2637 -0.7 -1.1 putative methyltransferase, YaeB/AF_0241 family compare
Psest_2458 -0.7 -2.5 MoxR-like ATPases compare
Psest_1161 -0.7 -1.9 E3 Ubiquitin ligase. compare
Psest_2561 -0.7 -0.8 hypothetical protein compare
Psest_1525 -0.7 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_0212 -0.7 -1.1 exodeoxyribonuclease V, gamma subunit compare
Psest_2435 -0.7 -2.6 Transcriptional regulator compare
Psest_1327 -0.7 -4.0 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_0312 -0.6 -2.7 Superfamily II DNA and RNA helicases compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments

For carbon source Glycerol across organisms