Experiment set10H34 for Pseudomonas stutzeri RCH2

Compare to:

Ethanol carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0155 -5.0 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0279 -4.8 -7.7 methionine biosynthesis protein MetW compare
Psest_3648 -4.4 -11.7 anthranilate phosphoribosyltransferase compare
Psest_0152 -4.3 -6.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_3384 -4.2 -12.8 glutamate 5-kinase compare
Psest_0153 -3.9 -14.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0508 -3.8 -10.7 gamma-glutamyl phosphate reductase compare
Psest_2055 -3.8 -8.2 cytochrome c550 (from data) conserved
Psest_3647 -3.8 -8.9 Indole-3-glycerol phosphate synthase compare
Psest_2272 -3.7 -13.8 coenzyme PQQ biosynthesis protein C conserved
Psest_3650 -3.6 -15.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0062 -3.6 -14.8 tryptophan synthase, alpha subunit compare
Psest_3299 -3.6 -15.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2589 -3.5 -13.7 3-isopropylmalate dehydrogenase compare
Psest_3322 -3.4 -21.3 TIGR02099 family protein compare
Psest_0280 -3.4 -14.7 homoserine O-acetyltransferase compare
Psest_0313 -3.4 -8.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2590 -3.4 -1.9 3-isopropylmalate dehydratase, small subunit compare
Psest_2273 -3.4 -9.3 coenzyme PQQ biosynthesis protein B conserved
Psest_3298 -3.4 -13.9 histidinol dehydrogenase compare
Psest_2584 -3.3 -6.0 Phosphoribosylanthranilate isomerase compare
Psest_2382 -3.3 -15.1 coenzyme PQQ biosynthesis probable peptidase PqqF conserved
Psest_0063 -3.3 -12.3 tryptophan synthase, beta subunit compare
Psest_3866 -3.3 -18.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0687 -3.3 -11.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2038 -3.2 -10.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain conserved
Psest_2578 -3.1 -14.4 O-succinylhomoserine sulfhydrylase compare
Psest_3226 -3.1 -1.7 Predicted membrane protein compare
Psest_1037 -3.0 -3.5 acetolactate synthase, small subunit compare
Psest_0325 -3.0 -11.8 Putative threonine efflux protein compare
Psest_0326 -2.9 -15.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0327 -2.9 -9.6 Transcriptional regulator compare
Psest_2048 -2.9 -5.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2014 -2.9 -15.2 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Psest_2274 -2.7 -6.3 coenzyme PQQ biosynthesis protein A compare
Psest_2276 -2.6 -6.8 Aldehyde dehydrogenase (EC 1.2.1.3) (from data) conserved
Psest_3943 -2.6 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3864 -2.5 -13.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2044 -2.5 -6.2 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system conserved
Psest_2591 -2.5 -3.9 3-isopropylmalate dehydratase, large subunit compare
Psest_1772 -2.5 -6.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2651 -2.4 -5.9 DNA topoisomerase I, bacterial compare
Psest_1235 -2.4 -8.5 Leucyl aminopeptidase compare
Psest_2579 -2.4 -5.8 amidophosphoribosyltransferase compare
Psest_2040 -2.3 -10.1 alcohol ABC transporter, permease protein conserved
Psest_3306 -2.2 -4.6 conserved hypothetical integral membrane protein compare
Psest_2047 -2.2 -4.5 Signal transduction histidine kinase compare
Psest_3304 -2.1 -6.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2042 -2.1 -8.8 PQQ-dependent catabolism-associated beta-propeller protein conserved
Psest_3159 -2.0 -5.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0999 -2.0 -2.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2270 -2.0 -9.0 coenzyme PQQ biosynthesis protein E conserved
Psest_3884 -1.8 -1.2 Signal transduction histidine kinase compare
Psest_3214 -1.8 -5.8 phosphate acetyltransferase compare
Psest_1474 -1.7 -2.0 phosphoribosylaminoimidazole synthetase compare
Psest_2967 -1.7 -3.5 flagellar basal-body rod protein FlgC compare
Psest_1001 -1.7 -3.2 hypothetical protein compare
Psest_1008 -1.7 -1.8 hypothetical protein compare
Psest_3307 -1.7 -6.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1922 -1.7 -8.3 aminopeptidase N, Escherichia coli type compare
Psest_3303 -1.7 -4.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4097 -1.7 -8.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2786 -1.6 -1.6 Domain of unknown function (DUF3597). compare
Psest_2940 -1.6 -3.7 Predicted membrane protein compare
Psest_2054 -1.6 -8.6 PQQ-dependent dehydrogenase, methanol/ethanol family conserved
Psest_2046 -1.5 -3.7 hypothetical protein compare
Psest_3213 -1.5 -4.9 acetate kinase compare
Psest_2708 -1.5 -7.8 transaldolase compare
Psest_2060 -1.5 -9.4 PQQ-dependent dehydrogenase, methanol/ethanol family conserved
Psest_1510 -1.5 -3.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2561 -1.5 -1.3 hypothetical protein compare
Psest_2271 -1.5 -3.0 coenzyme PQQ biosynthesis protein PqqD conserved
Psest_0417 -1.5 -2.6 Acyl-CoA dehydrogenases compare
Psest_2946 -1.4 -3.3 septum site-determining protein MinD compare
Psest_0212 -1.4 -2.3 exodeoxyribonuclease V, gamma subunit compare
Psest_3766 -1.4 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_2053 -1.4 -4.0 Uncharacterized low-complexity proteins conserved
Psest_2267 -1.4 -7.7 PAS domain S-box conserved
Psest_2850 -1.4 -1.4 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2041 -1.4 -2.9 ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system compare
Psest_3338 -1.4 -1.9 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3761 -1.4 -3.9 Transcription elongation factor compare
Psest_3562 -1.4 -2.2 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_1999 -1.4 -1.4 pseudouridine synthase compare
Psest_0115 -1.3 -1.5 Predicted integral membrane protein compare
Psest_3810 -1.3 -1.3 orotate phosphoribosyltransferase compare
Psest_2712 -1.3 -4.3 Surface lipoprotein compare
Psest_3883 -1.3 -5.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1013 -1.3 -2.5 phosphoribosylamine--glycine ligase compare
Psest_0542 -1.3 -6.5 AMP nucleosidase compare
Psest_2039 -1.3 -2.9 PQQ-dependent catabolism-associated CXXCW motif protein compare
Psest_0537 -1.3 -2.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_4298 -1.3 -1.2 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1947 -1.2 -0.8 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1295 -1.2 -5.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3649 -1.2 -6.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0248 -1.2 -5.7 Transcriptional regulator compare
Psest_0514 -1.2 -4.6 lytic murein transglycosylase B compare
Psest_0489 -1.1 -1.8 phosphoserine phosphatase SerB compare
Psest_3305 -1.1 -4.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2323 -1.1 -7.8 Uncharacterized protein conserved in archaea compare
Psest_0445 -1.1 -6.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3670 -1.1 -6.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_2988 -1.1 -3.9 aspartate kinase, monofunctional class compare
Psest_3921 -1.1 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0708 -1.1 -1.4 outer membrane assembly lipoprotein YfiO compare
Psest_2056 -1.1 -5.3 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain conserved
Psest_1516 -1.1 -2.0 Uncharacterized lipoprotein compare
Psest_3123 -1.1 -2.0 dihydroorotase, homodimeric type compare
Psest_1704 -1.1 -1.2 Dehydrogenases (flavoproteins) compare
Psest_4252 -1.0 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_3536 -1.0 -1.3 hypothetical protein compare
Psest_1640 -1.0 -6.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2268 -1.0 -2.8 Alcohol dehydrogenase, class IV compare
Psest_1313 -1.0 -1.4 Uncharacterized conserved small protein compare
Psest_2648 -1.0 -2.1 hypothetical protein compare
Psest_3756 -1.0 -2.7 hypothetical protein compare
Psest_2325 -1.0 -6.1 alpha-L-glutamate ligase-related protein compare
Psest_1643 -1.0 -1.2 hypothetical protein compare
Psest_1473 -1.0 -4.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1472 -1.0 -4.5 Protein of unknown function (DUF3108). compare
Psest_3375 -1.0 -4.3 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1762 -1.0 -2.4 cytochrome c-type biogenesis protein CcmI compare
Psest_2968 -0.9 -5.2 flagellar basal-body rod protein FlgB compare
Psest_3735 -0.9 -1.8 uncharacterized domain 1 compare
Psest_2043 -0.9 -4.7 Sel1 repeat. compare
Psest_2333 -0.9 -1.0 Protein of unknown function (DUF3359). compare
Psest_4044 -0.9 -2.4 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2324 -0.9 -7.4 hypothetical protein compare
Psest_1480 -0.9 -1.8 arsenate reductase (glutaredoxin) compare
Psest_4088 -0.9 -2.8 Transcriptional regulators compare
Psest_0060 -0.9 -1.7 Predicted Fe-S protein compare
Psest_3816 -0.9 -1.2 DNA-directed RNA polymerase, omega subunit compare
Psest_3419 -0.9 -4.3 Predicted transcriptional regulators compare
Psest_2810 -0.9 -3.0 5'/3'-nucleotidase SurE compare
Psest_0346 -0.9 -2.0 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_0872 -0.9 -1.0 Helix-turn-helix. compare
Psest_2446 -0.8 -1.3 acetyl-CoA acetyltransferases compare
Psest_1022 -0.8 -5.6 Thiol:disulfide interchange protein compare
Psest_3496 -0.8 -1.3 Predicted metal-binding protein compare
Psest_4126 -0.8 -1.7 Predicted peroxiredoxins compare
Psest_2083 -0.8 -3.2 Putative sterol carrier protein compare
Psest_0759 -0.8 -1.0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_0442 -0.8 -1.9 ATPases of the AAA+ class compare
Psest_2974 -0.8 -3.8 Predicted glycosyltransferase compare
Psest_1563 -0.8 -1.4 Protein of unknown function (DUF548). compare
Psest_0024 -0.8 -4.7 LysM domain. compare
Psest_0740 -0.8 -1.7 Transcriptional regulator compare
Psest_1322 -0.8 -1.8 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1824 -0.8 -1.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2872 -0.8 -1.4 protein RecA compare
Psest_1724 -0.8 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2123 -0.8 -1.4 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_0362 -0.8 -2.4 TRAP-type C4-dicarboxylate transport system, small permease component compare
Psest_3944 -0.8 -1.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3092 -0.8 -1.2 ribonuclease III, bacterial compare
Psest_0154 -0.8 -2.9 Uncharacterized conserved protein compare
Psest_2864 -0.8 -2.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3954 -0.8 -2.1 Small protein A (tmRNA-binding) compare
Psest_2027 -0.8 -4.9 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_0919 -0.7 -1.6 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_3047 -0.7 -0.7 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1814 -0.7 -5.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0845 -0.7 -0.7 hypothetical protein compare
Psest_2806 -0.7 -3.5 RNA polymerase sigma factor RpoS compare
Psest_0568 -0.7 -1.5 pseudouridine synthase compare
Psest_1000 -0.7 -5.1 PAS domain S-box compare
Psest_3449 -0.7 -1.4 DJ-1 family protein compare
Psest_3819 -0.7 -1.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_4363 -0.7 -3.9 ATPases involved in chromosome partitioning compare
Psest_0161 -0.7 -1.1 Membrane-bound metallopeptidase compare
Psest_1804 -0.7 -1.2 Superfamily II DNA and RNA helicases compare
Psest_3316 -0.7 -4.0 Predicted P-loop-containing kinase compare
Psest_0484 -0.7 -2.6 hypothetical protein compare
Psest_1535 -0.7 -2.8 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_3482 -0.7 -2.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2719 -0.7 -1.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3502 -0.7 -1.5 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_3400 -0.7 -0.9 Copper resistance protein D. compare
Psest_2643 -0.7 -1.2 Beta-glucosidase-related glycosidases compare
Psest_3287 -0.7 -2.9 Type II secretory pathway, component PulF compare
Psest_3664 -0.7 -0.6 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_4070 -0.7 -4.7 PAS domain S-box compare
Psest_0970 -0.7 -1.4 hypothetical protein compare
Psest_2764 -0.7 -0.8 hypothetical protein compare
Psest_4247 -0.7 -2.7 Serine/threonine protein phosphatase compare
Psest_3899 -0.7 -2.3 Predicted phosphoribosyltransferases compare
Psest_2641 -0.7 -5.0 Conserved secreted protein compare
Psest_3878 -0.7 -1.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2911 -0.6 -1.3 Protein of unknown function (DUF2945). compare
Psest_4103 -0.6 -1.1 AraC-type DNA-binding domain-containing proteins compare
Psest_1325 -0.6 -3.1 Molecular chaperone compare
Psest_4303 -0.6 -1.4 HEAT repeat. compare
Psest_2847 -0.6 -1.9 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1686 -0.6 -2.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3651 -0.6 -2.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0546 -0.6 -3.1 hypothetical protein compare
Psest_2892 -0.6 -1.3 Transcriptional regulator compare
Psest_3270 -0.6 -1.3 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_4005 -0.6 -1.9 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare


Specific Phenotypes

For 28 genes in this experiment

For carbon source Ethanol in Pseudomonas stutzeri RCH2

For carbon source Ethanol across organisms