Experiment set10H33 for Pseudomonas stutzeri RCH2

Compare to:

Ethanol carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3384 -4.6 -11.9 glutamate 5-kinase compare
Psest_2055 -4.4 -9.8 cytochrome c550 (from data) conserved
Psest_2584 -4.3 -10.7 Phosphoribosylanthranilate isomerase compare
Psest_0153 -4.2 -15.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3648 -4.1 -11.3 anthranilate phosphoribosyltransferase compare
Psest_3647 -4.1 -9.4 Indole-3-glycerol phosphate synthase compare
Psest_0508 -3.9 -12.2 gamma-glutamyl phosphate reductase compare
Psest_3650 -3.9 -17.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3226 -3.9 -1.7 Predicted membrane protein compare
Psest_1037 -3.9 -4.2 acetolactate synthase, small subunit compare
Psest_3214 -3.9 -12.9 phosphate acetyltransferase compare
Psest_0062 -3.8 -14.5 tryptophan synthase, alpha subunit compare
Psest_0155 -3.7 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0279 -3.7 -6.7 methionine biosynthesis protein MetW compare
Psest_2591 -3.5 -5.1 3-isopropylmalate dehydratase, large subunit compare
Psest_3866 -3.5 -17.6 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2272 -3.5 -13.3 coenzyme PQQ biosynthesis protein C conserved
Psest_0325 -3.5 -12.9 Putative threonine efflux protein compare
Psest_3322 -3.4 -22.4 TIGR02099 family protein compare
Psest_0063 -3.4 -12.1 tryptophan synthase, beta subunit compare
Psest_0326 -3.3 -15.7 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0327 -3.3 -10.2 Transcriptional regulator compare
Psest_0280 -3.3 -15.1 homoserine O-acetyltransferase compare
Psest_3213 -3.2 -8.2 acetate kinase compare
Psest_0152 -3.2 -4.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_2589 -3.2 -12.4 3-isopropylmalate dehydrogenase compare
Psest_3298 -3.2 -12.1 histidinol dehydrogenase compare
Psest_0687 -3.2 -11.7 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2014 -3.2 -12.6 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Psest_0313 -3.1 -8.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2038 -3.1 -8.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain conserved
Psest_2578 -3.0 -15.7 O-succinylhomoserine sulfhydrylase compare
Psest_2382 -3.0 -12.6 coenzyme PQQ biosynthesis probable peptidase PqqF conserved
Psest_3943 -3.0 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2047 -2.9 -4.1 Signal transduction histidine kinase compare
Psest_3299 -2.7 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2273 -2.7 -8.9 coenzyme PQQ biosynthesis protein B conserved
Psest_2048 -2.7 -5.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0999 -2.7 -2.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2276 -2.6 -8.7 Aldehyde dehydrogenase (EC 1.2.1.3) (from data) conserved
Psest_3864 -2.6 -12.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_4191 -2.6 -4.9 Transcriptional regulator compare
Psest_0417 -2.5 -2.4 Acyl-CoA dehydrogenases compare
Psest_2270 -2.4 -9.1 coenzyme PQQ biosynthesis protein E conserved
Psest_2271 -2.4 -5.3 coenzyme PQQ biosynthesis protein PqqD conserved
Psest_3338 -2.4 -2.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2590 -2.4 -1.8 3-isopropylmalate dehydratase, small subunit compare
Psest_2579 -2.3 -6.5 amidophosphoribosyltransferase compare
Psest_2044 -2.2 -4.3 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system conserved
Psest_2040 -2.2 -13.2 alcohol ABC transporter, permease protein conserved
Psest_2042 -2.2 -11.4 PQQ-dependent catabolism-associated beta-propeller protein conserved
Psest_0277 -2.1 -2.2 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1235 -2.1 -8.9 Leucyl aminopeptidase compare
Psest_1772 -2.1 -4.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2712 -2.0 -5.4 Surface lipoprotein compare
Psest_2060 -2.0 -12.5 PQQ-dependent dehydrogenase, methanol/ethanol family conserved
Psest_1922 -1.9 -9.1 aminopeptidase N, Escherichia coli type compare
Psest_3047 -1.9 -1.6 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3306 -1.9 -5.2 conserved hypothetical integral membrane protein compare
Psest_0708 -1.9 -2.4 outer membrane assembly lipoprotein YfiO compare
Psest_1013 -1.9 -2.8 phosphoribosylamine--glycine ligase compare
Psest_1704 -1.9 -1.3 Dehydrogenases (flavoproteins) compare
Psest_2274 -1.8 -4.4 coenzyme PQQ biosynthesis protein A compare
Psest_3307 -1.8 -7.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3013 -1.8 -2.6 cobyrinic acid a,c-diamide synthase compare
Psest_2054 -1.8 -9.9 PQQ-dependent dehydrogenase, methanol/ethanol family conserved
Psest_1474 -1.7 -2.6 phosphoribosylaminoimidazole synthetase compare
Psest_3649 -1.7 -7.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2053 -1.7 -5.5 Uncharacterized low-complexity proteins conserved
Psest_2864 -1.7 -4.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3123 -1.7 -2.5 dihydroorotase, homodimeric type compare
Psest_2651 -1.6 -3.9 DNA topoisomerase I, bacterial compare
Psest_2056 -1.6 -7.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain conserved
Psest_3766 -1.5 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2708 -1.5 -9.1 transaldolase compare
Psest_2945 -1.5 -1.7 septum site-determining protein MinC compare
Psest_2267 -1.5 -8.5 PAS domain S-box conserved
Psest_1496 -1.5 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_4010 -1.5 -1.4 peroxiredoxin, OsmC subfamily compare
Psest_3159 -1.4 -4.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2039 -1.4 -2.3 PQQ-dependent catabolism-associated CXXCW motif protein compare
Psest_2041 -1.4 -3.7 ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system compare
Psest_0442 -1.4 -2.3 ATPases of the AAA+ class compare
Psest_3303 -1.4 -4.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2967 -1.4 -3.5 flagellar basal-body rod protein FlgC compare
Psest_3129 -1.4 -1.3 tyrosine recombinase XerD compare
Psest_0831 -1.4 -1.3 hypothetical protein compare
Psest_4044 -1.4 -2.2 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2268 -1.3 -4.0 Alcohol dehydrogenase, class IV compare
Psest_0725 -1.3 -2.0 Negative regulator of beta-lactamase expression compare
Psest_1001 -1.3 -4.1 hypothetical protein compare
Psest_1640 -1.3 -8.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3305 -1.3 -5.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1295 -1.3 -5.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0872 -1.3 -1.1 Helix-turn-helix. compare
Psest_3828 -1.2 -1.2 zinc-binding alcohol dehydrogenase family protein compare
Psest_1563 -1.2 -2.5 Protein of unknown function (DUF548). compare
Psest_3670 -1.2 -7.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3304 -1.2 -4.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0740 -1.2 -2.0 Transcriptional regulator compare
Psest_0542 -1.1 -6.0 AMP nucleosidase compare
Psest_3664 -1.1 -0.8 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0719 -1.1 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_1947 -1.1 -1.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2988 -1.1 -3.9 aspartate kinase, monofunctional class compare
Psest_3456 -1.1 -1.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_1510 -1.1 -3.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3480 -1.1 -2.5 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_4097 -1.1 -6.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1695 -1.1 -2.4 Tfp pilus assembly protein PilZ compare
Psest_3449 -1.1 -1.9 DJ-1 family protein compare
Psest_3816 -1.1 -1.3 DNA-directed RNA polymerase, omega subunit compare
Psest_3883 -1.0 -4.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2046 -1.0 -2.0 hypothetical protein compare
Psest_2940 -1.0 -3.0 Predicted membrane protein compare
Psest_2333 -1.0 -1.0 Protein of unknown function (DUF3359). compare
Psest_0514 -1.0 -3.7 lytic murein transglycosylase B compare
Psest_2325 -1.0 -5.9 alpha-L-glutamate ligase-related protein compare
Psest_2946 -1.0 -2.8 septum site-determining protein MinD compare
Psest_2968 -1.0 -4.6 flagellar basal-body rod protein FlgB compare
Psest_2460 -1.0 -1.9 hypothetical protein compare
Psest_2323 -1.0 -7.0 Uncharacterized protein conserved in archaea compare
Psest_3168 -1.0 -1.9 Molybdopterin converting factor, large subunit compare
Psest_1888 -1.0 -1.2 Sua5/YciO/YrdC/YwlC family protein compare
Psest_3519 -1.0 -2.5 Uncharacterized conserved protein compare
Psest_2324 -0.9 -7.4 hypothetical protein compare
Psest_0503 -0.9 -1.4 Acyl dehydratase compare
Psest_1472 -0.9 -5.6 Protein of unknown function (DUF3108). compare
Psest_0064 -0.9 -2.2 Transcriptional regulator compare
Psest_0248 -0.9 -4.2 Transcriptional regulator compare
Psest_2585 -0.9 -1.1 pseudouridylate synthase I compare
Psest_2027 -0.9 -5.6 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_2907 -0.9 -1.2 Protein of unknown function (DUF3618). compare
Psest_3810 -0.9 -1.0 orotate phosphoribosyltransferase compare
Psest_2043 -0.9 -3.6 Sel1 repeat. compare
Psest_1322 -0.9 -2.0 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_4098 -0.9 -2.1 Superfamily I DNA and RNA helicases compare
Psest_3824 -0.9 -3.5 Predicted membrane protein compare
Psest_0869 -0.9 -1.7 Acetyltransferase (isoleucine patch superfamily) compare
Psest_3502 -0.8 -2.4 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_0357 -0.8 -2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2726 -0.8 -1.3 Rhodanese-related sulfurtransferase compare
Psest_2901 -0.8 -1.5 hypothetical protein compare
Psest_2809 -0.8 -2.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3546 -0.8 -1.0 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3944 -0.8 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0778 -0.8 -2.4 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_0445 -0.8 -5.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_4252 -0.8 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3080 -0.8 -0.8 AraC-type DNA-binding domain-containing proteins compare
Psest_1814 -0.8 -5.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2850 -0.8 -1.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3767 -0.8 -2.2 tyrosine recombinase XerC compare
Psest_1473 -0.7 -2.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3400 -0.7 -1.0 Copper resistance protein D. compare
Psest_0757 -0.7 -2.6 hypothetical protein compare
Psest_0515 -0.7 -2.2 rare lipoprotein A compare
Psest_4370 -0.7 -1.5 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_4184 -0.7 -2.9 hypothetical protein compare
Psest_1686 -0.7 -2.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1990 -0.7 -1.5 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_4309 -0.7 -2.5 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_3447 -0.7 -1.5 Uncharacterized MobA-related protein compare
Psest_2719 -0.7 -1.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0212 -0.7 -1.1 exodeoxyribonuclease V, gamma subunit compare
Psest_3562 -0.7 -1.3 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_1643 -0.7 -1.0 hypothetical protein compare
Psest_1692 -0.7 -4.2 conserved hypothetical protein, YceG family compare
Psest_1111 -0.7 -2.1 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3375 -0.7 -3.1 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3803 -0.7 -0.9 DNA repair protein radc compare
Psest_0031 -0.7 -1.0 Uncharacterized conserved protein compare
Psest_2120 -0.7 -1.4 Transcriptional regulator compare
Psest_1623 -0.7 -2.5 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2872 -0.7 -0.8 protein RecA compare
Psest_1486 -0.7 -1.9 hypothetical protein compare
Psest_1029 -0.7 -1.6 Regulator of competence-specific genes compare
Psest_1366 -0.7 -0.9 hypothetical protein compare
Psest_3455 -0.7 -1.9 Dihaem cytochrome c. compare
Psest_1516 -0.7 -1.2 Uncharacterized lipoprotein compare
Psest_2681 -0.7 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0672 -0.7 -3.8 Alcohol dehydrogenase, class IV compare
Psest_3532 -0.7 -3.1 Peptidase propeptide and YPEB domain. compare
Psest_0129 -0.7 -5.1 Protein of unknown function (DUF2931). compare
Psest_1139 -0.7 -2.9 PAS domain S-box compare
Psest_2428 -0.6 -2.1 hypothetical protein compare
Psest_4325 -0.6 -1.7 hypothetical protein compare
Psest_1631 -0.6 -1.3 Uncharacterized conserved small protein compare
Psest_2557 -0.6 -1.7 Protein of unknown function (DUF2474). compare
Psest_1520 -0.6 -1.9 hypothetical protein compare
Psest_4134 -0.6 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1103 -0.6 -1.6 GTP-binding protein YchF compare
Psest_3707 -0.6 -2.2 Transcriptional regulator compare
Psest_0346 -0.6 -1.4 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_0243 -0.6 -0.7 hypothetical protein compare
Psest_0987 -0.6 -1.3 Predicted periplasmic or secreted lipoprotein compare
Psest_1282 -0.6 -1.2 Amidases related to nicotinamidase compare
Psest_0609 -0.6 -0.8 hypothetical protein compare
Psest_1022 -0.6 -3.8 Thiol:disulfide interchange protein compare
Psest_3022 -0.6 -1.6 Predicted membrane protein compare


Specific Phenotypes

For 33 genes in this experiment

For carbon source Ethanol in Pseudomonas stutzeri RCH2

For carbon source Ethanol across organisms