Experiment set10H33 for Pseudomonas stutzeri RCH2

Compare to:

Ethanol carbon source

200 most detrimental genes:

  gene name fitness t score description  
Psest_2260 +3.7 34.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1635 +3.6 32.4 Signal transduction histidine kinase compare
Psest_3192 +3.1 20.1 diguanylate cyclase (GGDEF) domain compare
Psest_1840 +3.0 28.8 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_0498 +2.8 4.0 ribosome small subunit-dependent GTPase A compare
Psest_2136 +2.8 21.9 Predicted homoserine dehydrogenase compare
Psest_1805 +2.7 9.7 integration host factor, beta subunit compare
Psest_1974 +2.6 11.1 integration host factor, alpha subunit compare
Psest_3998 +2.6 14.0 glutamate--cysteine ligase compare
Psest_3960 +2.5 5.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1923 +2.4 10.1 adhesin-associated BNR repeat protein (from data) compare
Psest_2025 +2.4 5.3 cold shock domain protein CspD compare
Psest_1122 +2.3 18.9 putative adhesin (DUF1302) (from data) compare
Psest_2645 +2.3 14.1 Transcriptional regulator compare
Psest_1735 +2.2 12.6 flagellar biosynthetic protein FlhB compare
Psest_3372 +2.2 14.0 Tfp pilus assembly protein PilW compare
Psest_1924 +2.2 18.3 adhesin-associated MmpL efflux pump (from data) compare
Psest_1734 +2.1 7.1 flagellar biosynthetic protein FliR compare
Psest_1733 +2.1 7.8 flagellar biosynthetic protein FliQ compare
Psest_4113 +2.1 6.3 hypothetical protein compare
Psest_1725 +2.1 13.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3371 +2.0 12.7 type IV pilus modification protein PilV compare
Psest_0298 +2.0 7.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1657 +2.0 4.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3790 +2.0 13.9 Cytochrome c5 compare
Psest_2604 +2.0 10.2 WbqC-like protein family. compare
Psest_2605 +1.9 8.5 transcriptional activator RfaH compare
Psest_0958 +1.9 11.6 Oligoketide cyclase/lipid transport protein compare
Psest_2072 +1.9 12.0 Methyltransferase domain. compare
Psest_2602 +1.8 14.1 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1238 +1.8 11.2 Predicted membrane protein/domain compare
Psest_3370 +1.8 7.6 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1731 +1.7 5.5 flagellar biosynthetic protein FliO compare
Psest_2530 +1.7 8.6 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2532 +1.7 5.4 Uncharacterized protein conserved in bacteria compare
Psest_1737 +1.7 9.2 flagellar biosynthesis protein FlhA compare
Psest_1661 +1.7 4.2 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3374 +1.7 12.3 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_1625 +1.7 4.4 hypothetical protein compare
Psest_0108 +1.6 5.1 malonate decarboxylase, epsilon subunit compare
Psest_2600 +1.6 10.5 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis compare
Psest_3927 +1.6 9.2 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2531 +1.6 11.7 cytochrome c oxidase accessory protein FixG compare
Psest_0013 +1.6 9.4 Lauroyl/myristoyl acyltransferase compare
Psest_2959 +1.6 12.3 flagellar hook-associated protein FlgK compare
Psest_2603 +1.6 12.2 capsular exopolysaccharide family compare
Psest_4078 +1.6 4.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2527 +1.6 9.5 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1732 +1.5 7.9 flagellar biosynthetic protein FliP compare
Psest_1720 +1.5 9.6 flagellar motor switch protein FliG compare
Psest_2381 +1.5 9.3 hypothetical protein compare
Psest_0105 +1.5 5.7 malonate decarboxylase, beta subunit compare
Psest_3373 +1.5 6.6 Tfp pilus assembly protein PilX compare
Psest_3818 +1.5 8.3 endoribonuclease L-PSP, putative compare
Psest_2944 +1.5 2.7 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_3351 +1.4 7.1 peptide chain release factor 3 compare
Psest_2379 +1.4 8.8 PAS domain S-box compare
Psest_3323 +1.4 4.2 ribonuclease, Rne/Rng family compare
Psest_0998 +1.4 4.1 poly(A) polymerase compare
Psest_0558 +1.4 2.3 urease, beta subunit compare
Psest_1722 +1.4 8.7 flagellar protein export ATPase FliI compare
Psest_1054 +1.4 7.9 Diaminopimelate decarboxylase compare
Psest_2958 +1.4 10.0 flagellar hook-associated protein 3 compare
Psest_3317 +1.4 8.4 Phosphotransferase System HPr (HPr) Family compare
Psest_2964 +1.3 6.7 flagellar basal-body rod protein FlgF compare
Psest_1719 +1.3 7.2 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_0299 +1.3 3.9 Chemotaxis signal transduction protein compare
Psest_2963 +1.3 6.3 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Psest_2973 +1.3 5.6 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_1659 +1.3 3.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1879 +1.3 3.9 Trk-type K+ transport systems, membrane components compare
Psest_2066 +1.2 1.8 ABC-type uncharacterized transport system, permease component compare
Psest_1729 +1.2 6.3 flagellar motor switch protein FliM compare
Psest_0309 +1.2 1.5 RND family efflux transporter, MFP subunit compare
Psest_0993 +1.2 8.7 Glucose-6-phosphate isomerase compare
Psest_2775 +1.2 3.7 Glycerol-3-phosphate dehydrogenase compare
Psest_2942 +1.2 6.9 Surface lipoprotein compare
Psest_2960 +1.2 6.2 flagellar rod assembly protein/muramidase FlgJ compare
Psest_1740 +1.2 6.3 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_1723 +1.2 5.8 flagellar export protein FliJ compare
Psest_1718 +1.2 3.7 flagellar hook-basal body complex protein FliE compare
Psest_2308 +1.2 2.2 Predicted Fe-S protein compare
Psest_0538 +1.2 11.4 Signal transduction histidine kinase compare
Psest_0411 +1.2 8.1 biotin synthetase compare
Psest_3565 +1.2 2.6 hypothetical protein compare
Psest_1656 +1.2 3.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1655 +1.1 4.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3678 +1.1 6.1 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_0103 +1.1 3.1 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_3961 +1.1 4.7 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_3100 +1.1 4.3 RNA polymerase sigma factor RpoE compare
Psest_2614 +1.1 9.5 Predicted glycosyltransferases compare
Psest_1055 +1.1 7.7 Saccharopine dehydrogenase and related proteins compare
Psest_1065 +1.1 2.9 hypothetical protein compare
Psest_2608 +1.1 5.8 hypothetical protein compare
Psest_3762 +1.1 6.4 iron donor protein CyaY compare
Psest_2611 +1.1 8.0 Glycosyltransferase compare
Psest_2380 +1.1 8.6 Uncharacterized conserved protein compare
Psest_4345 +1.0 5.9 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2312 +1.0 6.3 Small-conductance mechanosensitive channel compare
Psest_2609 +1.0 8.5 Glycosyltransferase compare
Psest_1999 +1.0 1.1 pseudouridine synthase compare
Psest_0106 +1.0 2.6 malonate decarboxylase, gamma subunit compare
Psest_2961 +1.0 3.0 Flagellar basal-body P-ring protein compare
Psest_1728 +1.0 4.6 Flagellar basal body-associated protein compare
Psest_1660 +1.0 2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1306 +0.9 1.5 hypothetical protein compare
Psest_0969 +0.9 1.9 transcription elongation factor GreA compare
Psest_1016 +0.9 4.9 putative TIM-barrel protein, nifR3 family compare
Psest_3031 +0.9 0.9 hypothetical protein compare
Psest_3063 +0.9 3.5 hypothetical protein compare
Psest_2965 +0.9 7.6 fagellar hook-basal body proteins compare
Psest_0182 +0.9 4.0 glycine cleavage system H protein compare
Psest_2232 +0.9 7.2 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_0956 +0.9 5.9 Transcriptional regulators compare
Psest_1123 +0.9 6.5 adhesin-associated sorting protein (DUF1329) (from data) compare
Psest_4193 +0.9 5.2 Predicted signal transduction protein compare
Psest_2650 +0.9 2.2 hypothetical protein compare
Psest_0135 +0.8 6.6 Uncharacterized enzymes related to aldose 1-epimerase compare
Psest_2088 +0.8 2.0 Uncharacterized protein conserved in bacteria compare
Psest_4230 +0.8 5.0 Transcriptional regulator compare
Psest_0310 +0.8 2.3 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1721 +0.8 2.5 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3174 +0.8 6.8 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_0867 +0.8 1.2 hypothetical protein compare
Psest_3843 +0.8 4.4 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1905 +0.8 2.3 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3377 +0.8 1.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1752 +0.8 1.3 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_2975 +0.8 3.2 tRNA_Arg_CCT compare
Psest_0133 +0.8 1.7 type VI secretion protein, VC_A0107 family compare
Psest_1491 +0.8 2.9 Cold shock proteins compare
Psest_3476 +0.8 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0393 +0.8 4.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2424 +0.8 1.8 K+ transport systems, NAD-binding component compare
Psest_2126 +0.8 2.5 Transcriptional regulators compare
Psest_1204 +0.8 2.6 Transcriptional regulators compare
Psest_1463 +0.8 1.2 SufE protein probably involved in Fe-S center assembly compare
Psest_3792 +0.7 1.9 Putative translation initiation inhibitor, yjgF family compare
Psest_3872 +0.7 4.4 FAD/FMN-containing dehydrogenases compare
Psest_1738 +0.7 2.6 flagellar biosynthetic protein FlhF compare
Psest_2606 +0.7 4.4 Glycosyltransferase compare
Psest_3637 +0.7 1.1 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_0193 +0.7 1.3 conserved hypothetical protein compare
Psest_1699 +0.7 2.9 Selenocysteine lyase compare
Psest_2599 +0.7 3.4 hypothetical protein compare
Psest_2288 +0.7 2.4 trigger factor compare
Psest_1691 +0.7 2.8 aminodeoxychorismate lyase compare
Psest_1743 +0.7 4.6 Chemotaxis protein histidine kinase and related kinases compare
Psest_0510 +0.7 2.4 iojap-like ribosome-associated protein compare
Psest_1812 +0.7 4.9 pseudaminic acid CMP-transferase compare
Psest_1124 +0.7 5.6 ATP-dependent transcriptional regulator compare
Psest_4049 +0.7 1.1 hypothetical protein compare
Psest_3286 +0.7 2.8 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_1308 +0.7 3.0 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_3745 +0.7 2.9 Uncharacterized enzyme of heme biosynthesis compare
Psest_1681 +0.7 2.4 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_1431 +0.7 1.9 hypothetical protein compare
Psest_1744 +0.7 3.8 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_3415 +0.7 5.8 hypothetical protein compare
Psest_2941 +0.7 5.1 hypothetical protein compare
Psest_2962 +0.7 4.0 Flagellar basal body L-ring protein compare
Psest_4204 +0.7 3.8 hypothetical protein compare
Psest_3357 +0.7 2.8 Predicted pyrophosphatase compare
Psest_4405 +0.7 1.2 hypothetical protein compare
Psest_1870 +0.7 1.5 Transcriptional regulators compare
Psest_2243 +0.7 0.8 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1162 +0.7 1.4 Spermidine synthase compare
Psest_2317 +0.7 4.1 Uncharacterized protein conserved in bacteria compare
Psest_2601 +0.7 5.0 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_0086 +0.7 1.9 hypothetical protein compare
Psest_0359 +0.7 2.0 Transcriptional regulators compare
Psest_2981 +0.6 1.2 sodium pump decarboxylases, gamma subunit compare
Psest_2023 +0.6 2.2 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1277 +0.6 4.5 2-isopropylmalate synthase, yeast type compare
Psest_1185 +0.6 1.2 heavy metal response regulator compare
Psest_3655 +0.6 3.1 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0113 +0.6 2.3 Uncharacterized protein conserved in bacteria compare
Psest_0691 +0.6 4.6 ribonuclease R compare
Psest_2384 +0.6 1.5 Uncharacterized protein conserved in bacteria compare
Psest_1952 +0.6 2.5 hypothetical protein compare
Psest_4382 +0.6 5.5 hypothetical protein compare
Psest_3250 +0.6 2.5 Rho termination factor, N-terminal domain. compare
Psest_0851 +0.6 4.3 Transcriptional regulators compare
Psest_3938 +0.6 2.7 Uncharacterized protein conserved in bacteria compare
Psest_3988 +0.6 3.4 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_4088 +0.6 2.3 Transcriptional regulators compare
Psest_3721 +0.6 3.1 Malic enzyme compare
Psest_2329 +0.6 4.8 Transcriptional regulator compare
Psest_0446 +0.6 3.3 hypothetical protein compare
Psest_2020 +0.6 2.4 Uncharacterized protein involved in purine metabolism compare
Psest_0466 +0.6 1.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1058 +0.6 1.4 ribosomal-protein-alanine acetyltransferase compare
Psest_0168 +0.6 2.9 Uncharacterized conserved protein compare
Psest_2773 +0.6 3.0 glycerol kinase compare
Psest_4322 +0.6 3.1 Domain of unknown function (DUF1835)./Protein of unknown function. compare
Psest_3720 +0.6 5.1 penicillin-binding protein, 1A family compare
Psest_2331 +0.6 3.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_0693 +0.6 5.3 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_0311 +0.6 2.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare


Specific Phenotypes

For 33 genes in this experiment

For carbon source Ethanol in Pseudomonas stutzeri RCH2

For carbon source Ethanol across organisms