Experiment set10H32 for Pseudomonas stutzeri RCH2

Compare to:

Glycolic Acid carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3648 -6.5 -7.8 anthranilate phosphoribosyltransferase compare
Psest_0508 -6.1 -11.0 gamma-glutamyl phosphate reductase compare
Psest_0279 -6.0 -8.3 methionine biosynthesis protein MetW compare
Psest_1180 -5.9 -8.1 hydroxypyruvate isomerase conserved
Psest_0153 -5.9 -14.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0062 -5.9 -15.7 tryptophan synthase, alpha subunit compare
Psest_0152 -5.8 -6.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_2590 -5.7 -1.6 3-isopropylmalate dehydratase, small subunit compare
Psest_0170 -5.7 -7.8 5,10-methenyltetrahydrofolate synthetase compare
Psest_3721 -5.6 -9.4 Malic enzyme compare
Psest_3226 -5.5 -1.6 Predicted membrane protein compare
Psest_3841 -5.5 -17.2 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) conserved
Psest_1182 -5.5 -9.2 Transcriptional regulator conserved
Psest_3842 -5.4 -6.3 Transcriptional regulators conserved
Psest_3650 -5.4 -17.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3840 -5.4 -8.2 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) conserved
Psest_1178 -5.3 -10.8 D-glycerate 2-kinase (EC 2.7.1.-) (from data) conserved
Psest_3647 -5.3 -8.9 Indole-3-glycerol phosphate synthase compare
Psest_3384 -5.3 -11.3 glutamate 5-kinase compare
Psest_3711 -5.1 -24.4 Glutamate synthase domain 2 compare
Psest_0325 -5.1 -12.7 Putative threonine efflux protein compare
Psest_0326 -5.1 -18.7 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3298 -5.1 -15.6 histidinol dehydrogenase compare
Psest_2578 -5.1 -16.2 O-succinylhomoserine sulfhydrylase compare
Psest_2591 -5.0 -4.4 3-isopropylmalate dehydratase, large subunit compare
Psest_3710 -4.9 -21.8 glutamate synthase small subunit family protein, proteobacterial compare
Psest_1179 -4.9 -1.9 2-hydroxy-3-oxopropionate reductase compare
Psest_3299 -4.8 -16.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0280 -4.8 -17.8 homoserine O-acetyltransferase compare
Psest_3839 -4.8 -5.6 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) conserved
Psest_3864 -4.8 -18.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2650 -4.7 -3.9 hypothetical protein compare
Psest_0155 -4.6 -8.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0063 -4.6 -11.1 tryptophan synthase, beta subunit compare
Psest_0504 -4.6 -7.9 Putative effector of murein hydrolase LrgA compare
Psest_3998 -4.6 -7.0 glutamate--cysteine ligase compare
Psest_0296 -4.5 -12.3 glutathione synthetase, prokaryotic compare
Psest_0313 -4.5 -8.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3651 -4.5 -11.3 2-phosphoglycolate phosphatase, prokaryotic conserved
Psest_3649 -4.5 -13.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1640 -4.5 -14.5 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3866 -4.4 -23.4 threonine ammonia-lyase, biosynthetic, long form compare
Psest_1814 -4.4 -21.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3943 -4.4 -7.2 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1181 -4.3 -15.0 Glyoxylate carboligase (EC 4.1.1.47) (from data) conserved
Psest_2584 -4.3 -5.3 Phosphoribosylanthranilate isomerase compare
Psest_3944 -4.2 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2988 -4.2 -10.7 aspartate kinase, monofunctional class compare
Psest_2589 -4.0 -11.6 3-isopropylmalate dehydrogenase compare
Psest_0542 -3.9 -14.5 AMP nucleosidase compare
Psest_0725 -3.9 -2.7 Negative regulator of beta-lactamase expression compare
Psest_0687 -3.9 -12.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1295 -3.9 -6.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1037 -3.8 -3.1 acetolactate synthase, small subunit compare
Psest_0327 -3.8 -8.5 Transcriptional regulator compare
Psest_0558 -3.7 -1.5 urease, beta subunit compare
Psest_1656 -3.7 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3338 -3.5 -2.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2579 -3.3 -5.1 amidophosphoribosyltransferase compare
Psest_1660 -3.2 -3.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1772 -3.0 -6.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0846 -2.8 -6.2 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3762 -2.8 -5.7 iron donor protein CyaY compare
Psest_1492 -2.7 -13.3 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0350 -2.7 -8.8 Predicted signal-transduction protein containing cAMP-binding and CBS domains compare
Psest_2862 -2.6 -14.1 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0843 -2.6 -13.6 hypothetical protein compare
Psest_0958 -2.6 -9.0 Oligoketide cyclase/lipid transport protein compare
Psest_0844 -2.6 -5.7 High-affinity Fe2+/Pb2+ permease compare
Psest_0505 -2.6 -3.6 Putative effector of murein hydrolase compare
Psest_3297 -2.5 -12.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1012 -2.4 -6.4 Signal transduction histidine kinase compare
Psest_0845 -2.4 -1.3 hypothetical protein compare
Psest_1657 -2.3 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2532 -2.3 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_1659 -2.3 -2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3159 -2.2 -5.5 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0489 -2.2 -2.2 phosphoserine phosphatase SerB compare
Psest_3810 -2.2 -1.5 orotate phosphoribosyltransferase compare
Psest_3818 -2.1 -7.2 endoribonuclease L-PSP, putative compare
Psest_1813 -2.1 -11.2 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3092 -2.1 -2.1 ribonuclease III, bacterial compare
Psest_2945 -2.1 -1.9 septum site-determining protein MinC compare
Psest_2001 -2.0 -1.4 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0013 -2.0 -8.1 Lauroyl/myristoyl acyltransferase compare
Psest_1655 -2.0 -4.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2329 -2.0 -13.6 Transcriptional regulator compare
Psest_1474 -1.9 -1.3 phosphoribosylaminoimidazole synthetase compare
Psest_3339 -1.9 -6.8 Signal transduction histidine kinase compare
Psest_2714 -1.8 -2.5 7-cyano-7-deazaguanine reductase compare
Psest_1661 -1.8 -1.2 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1762 -1.8 -2.4 cytochrome c-type biogenesis protein CcmI compare
Psest_1704 -1.8 -1.2 Dehydrogenases (flavoproteins) compare
Psest_3670 -1.8 -10.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_0181 -1.8 -6.6 glycine cleavage system T protein compare
Psest_3322 -1.8 -13.6 TIGR02099 family protein compare
Psest_0442 -1.7 -3.0 ATPases of the AAA+ class compare
Psest_1013 -1.7 -2.5 phosphoribosylamine--glycine ligase compare
Psest_3838 -1.6 -4.2 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_2946 -1.6 -3.7 septum site-determining protein MinD compare
Psest_2848 -1.6 -3.9 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_2847 -1.5 -4.7 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1335 -1.5 -10.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) conserved
Psest_2088 -1.5 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0417 -1.5 -2.7 Acyl-CoA dehydrogenases compare
Psest_2491 -1.4 -4.6 succinyl-CoA synthetase, beta subunit compare
Psest_2651 -1.4 -3.2 DNA topoisomerase I, bacterial compare
Psest_2123 -1.4 -2.2 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3850 -1.4 -0.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2490 -1.4 -8.0 succinyl-CoA synthetase, alpha subunit compare
Psest_1473 -1.4 -5.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3323 -1.4 -4.0 ribonuclease, Rne/Rng family compare
Psest_1177 -1.4 -4.0 pyruvate kinase compare
Psest_1292 -1.4 -7.1 monothiol glutaredoxin, Grx4 family compare
Psest_2849 -1.4 -8.2 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
Psest_1557 -1.4 -4.7 Phosphoenolpyruvate carboxylase compare
Psest_2527 -1.4 -6.2 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4370 -1.3 -1.8 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1686 -1.3 -2.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3664 -1.3 -0.9 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2104 -1.3 -1.9 IscR-regulated protein YhgI compare
Psest_2646 -1.3 -2.0 SOS regulatory protein LexA compare
Psest_0529 -1.3 -6.1 Putative Mg2+ and Co2+ transporter CorC compare
Psest_4083 -1.3 -8.6 Predicted permease compare
Psest_0952 -1.3 -2.0 Uncharacterized conserved protein compare
Psest_2027 -1.2 -7.6 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_4287 -1.2 -5.5 Predicted glutamine amidotransferases compare
Psest_0359 -1.2 -3.0 Transcriptional regulators compare
Psest_0515 -1.2 -4.0 rare lipoprotein A compare
Psest_1313 -1.2 -2.1 Uncharacterized conserved small protein compare
Psest_3024 -1.2 -4.0 cytochrome d oxidase, subunit II (cydB) compare
Psest_2851 -1.2 -9.0 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit compare
Psest_0740 -1.2 -1.6 Transcriptional regulator compare
Psest_0218 -1.2 -2.7 Acyl-CoA hydrolase compare
Psest_2158 -1.2 -9.1 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_0498 -1.2 -1.2 ribosome small subunit-dependent GTPase A compare
Psest_4044 -1.2 -3.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2850 -1.2 -1.5 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1506 -1.2 -4.9 queuosine biosynthesis protein QueC compare
Psest_0719 -1.2 -4.9 Uncharacterized protein conserved in bacteria compare
Psest_2975 -1.1 -2.1 tRNA_Arg_CCT compare
Psest_2325 -1.1 -6.3 alpha-L-glutamate ligase-related protein compare
Psest_2530 -1.1 -3.9 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3994 -1.1 -5.7 Signal transduction histidine kinase compare
Psest_2324 -1.1 -8.8 hypothetical protein compare
Psest_1242 -1.1 -1.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1496 -1.1 -0.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_0175 -1.1 -4.8 Xaa-Pro aminopeptidase compare
Psest_1543 -1.1 -4.4 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_3139 -1.1 -2.2 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_1947 -1.1 -1.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2037 -1.1 -3.6 uroporphyrin-III C-methyltransferase compare
Psest_4309 -1.1 -2.2 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_1886 -1.0 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_2708 -1.0 -6.2 transaldolase compare
Psest_4219 -1.0 -1.7 DNA polymerase I compare
Psest_1516 -1.0 -1.9 Uncharacterized lipoprotein compare
Psest_2613 -1.0 -1.2 hypothetical protein compare
Psest_1231 -1.0 -4.8 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_1870 -1.0 -1.3 Transcriptional regulators compare
Psest_0411 -1.0 -5.9 biotin synthetase compare
Psest_2308 -1.0 -0.8 Predicted Fe-S protein compare
Psest_2531 -1.0 -5.9 cytochrome c oxidase accessory protein FixG compare
Psest_0193 -1.0 -1.0 conserved hypothetical protein compare
Psest_3419 -0.9 -4.4 Predicted transcriptional regulators compare
Psest_3146 -0.9 -1.7 hypothetical protein compare
Psest_3837 -0.9 -5.4 malate synthase G compare
Psest_1871 -0.9 -4.5 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_2806 -0.9 -4.5 RNA polymerase sigma factor RpoS compare
Psest_3025 -0.9 -5.4 Cytochrome bd-type quinol oxidase, subunit 1 compare
Psest_2243 -0.9 -0.9 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_0119 -0.9 -1.5 hypothetical protein compare
Psest_1087 -0.9 -1.1 uncharacterized peroxidase-related enzyme compare
Psest_2333 -0.9 -0.8 Protein of unknown function (DUF3359). compare
Psest_0316 -0.9 -1.7 Cytochrome c556 compare
Psest_2470 -0.9 -2.5 hypothetical protein compare
Psest_3123 -0.9 -2.1 dihydroorotase, homodimeric type compare
Psest_2017 -0.9 -2.6 Predicted acyltransferase compare
Psest_3693 -0.9 -1.9 Glycosyltransferases involved in cell wall biogenesis compare
Psest_2863 -0.9 -4.0 Transcriptional regulator compare
Psest_0592 -0.9 -2.2 hypothetical protein compare
Psest_0503 -0.9 -1.6 Acyl dehydratase compare
Psest_4406 -0.9 -1.0 hypothetical protein compare
Psest_2872 -0.9 -1.2 protein RecA compare
Psest_0067 -0.9 -1.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_3678 -0.8 -3.4 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_4201 -0.8 -1.2 general secretion pathway protein F compare
Psest_3069 -0.8 -1.3 3-oxoadipate enol-lactonase compare
Psest_2511 -0.8 -2.9 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_3993 -0.8 -4.7 alpha-L-glutamate ligases, RimK family compare
Psest_1472 -0.8 -3.9 Protein of unknown function (DUF3108). compare
Psest_3890 -0.8 -1.2 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3790 -0.8 -4.5 Cytochrome c5 compare
Psest_2545 -0.8 -1.7 recombination protein RecR compare
Psest_3351 -0.8 -3.1 peptide chain release factor 3 compare
Psest_3884 -0.8 -0.7 Signal transduction histidine kinase compare
Psest_1270 -0.8 -2.4 hypothetical protein compare
Psest_3565 -0.8 -0.9 hypothetical protein compare
Psest_4084 -0.8 -5.5 oxaloacetate decarboxylase alpha subunit compare
Psest_4085 -0.8 -5.0 Biotin carboxylase compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Glycolic Acid in Pseudomonas stutzeri RCH2

For carbon source Glycolic Acid across organisms