Experiment set10H31 for Pseudomonas stutzeri RCH2

Compare to:

Glycolic Acid carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3864 -6.1 -16.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_1178 -6.1 -8.9 D-glycerate 2-kinase (EC 2.7.1.-) (from data) conserved
Psest_1182 -6.1 -9.3 Transcriptional regulator conserved
Psest_0152 -6.1 -7.4 Imidazoleglycerol-phosphate dehydratase compare
Psest_0508 -6.0 -12.3 gamma-glutamyl phosphate reductase compare
Psest_3650 -5.9 -17.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3648 -5.9 -11.3 anthranilate phosphoribosyltransferase compare
Psest_3840 -5.7 -7.9 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) conserved
Psest_0279 -5.7 -8.5 methionine biosynthesis protein MetW compare
Psest_2988 -5.7 -8.7 aspartate kinase, monofunctional class compare
Psest_0170 -5.6 -10.0 5,10-methenyltetrahydrofolate synthetase compare
Psest_0153 -5.6 -16.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3839 -5.6 -6.3 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) conserved
Psest_2578 -5.5 -17.4 O-succinylhomoserine sulfhydrylase compare
Psest_3649 -5.5 -12.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3647 -5.4 -8.3 Indole-3-glycerol phosphate synthase compare
Psest_1181 -5.4 -16.4 Glyoxylate carboligase (EC 4.1.1.47) (from data) conserved
Psest_1180 -5.4 -10.9 hydroxypyruvate isomerase conserved
Psest_3384 -5.4 -11.5 glutamate 5-kinase compare
Psest_3842 -5.4 -6.1 Transcriptional regulators conserved
Psest_3841 -5.4 -17.2 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) conserved
Psest_2591 -5.3 -4.0 3-isopropylmalate dehydratase, large subunit compare
Psest_1640 -5.3 -19.0 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0063 -5.1 -14.5 tryptophan synthase, beta subunit compare
Psest_3651 -5.1 -11.6 2-phosphoglycolate phosphatase, prokaryotic conserved
Psest_2584 -5.1 -9.8 Phosphoribosylanthranilate isomerase compare
Psest_3711 -5.1 -24.8 Glutamate synthase domain 2 compare
Psest_3710 -5.1 -23.4 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3944 -5.1 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0280 -5.0 -15.8 homoserine O-acetyltransferase compare
Psest_3721 -4.8 -9.8 Malic enzyme compare
Psest_3998 -4.8 -6.6 glutamate--cysteine ligase compare
Psest_0313 -4.7 -9.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3298 -4.7 -16.2 histidinol dehydrogenase compare
Psest_0062 -4.7 -13.4 tryptophan synthase, alpha subunit compare
Psest_0155 -4.6 -9.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0296 -4.5 -12.6 glutathione synthetase, prokaryotic compare
Psest_3299 -4.5 -17.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2590 -4.5 -1.5 3-isopropylmalate dehydratase, small subunit compare
Psest_0326 -4.4 -15.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1814 -4.2 -23.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3226 -4.2 -1.4 Predicted membrane protein compare
Psest_0542 -4.2 -14.1 AMP nucleosidase compare
Psest_2589 -4.1 -10.7 3-isopropylmalate dehydrogenase compare
Psest_0325 -4.1 -11.3 Putative threonine efflux protein compare
Psest_0844 -4.1 -6.9 High-affinity Fe2+/Pb2+ permease compare
Psest_3866 -4.0 -23.0 threonine ammonia-lyase, biosynthetic, long form compare
Psest_1295 -3.9 -7.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1037 -3.9 -4.0 acetolactate synthase, small subunit compare
Psest_0504 -3.9 -8.0 Putative effector of murein hydrolase LrgA compare
Psest_0845 -3.8 -1.3 hypothetical protein compare
Psest_2579 -3.7 -3.6 amidophosphoribosyltransferase compare
Psest_0327 -3.7 -8.9 Transcriptional regulator compare
Psest_0687 -3.6 -11.1 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3943 -3.5 -5.2 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2650 -3.4 -4.5 hypothetical protein compare
Psest_1686 -3.3 -7.5 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1496 -3.2 -1.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_1655 -3.2 -3.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0350 -3.0 -8.0 Predicted signal-transduction protein containing cAMP-binding and CBS domains compare
Psest_2862 -3.0 -14.6 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0843 -2.8 -15.1 hypothetical protein compare
Psest_3338 -2.7 -2.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0489 -2.7 -1.9 phosphoserine phosphatase SerB compare
Psest_3297 -2.7 -12.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1660 -2.6 -3.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0846 -2.6 -5.2 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1492 -2.6 -11.8 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0708 -2.6 -2.7 outer membrane assembly lipoprotein YfiO compare
Psest_1656 -2.6 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1813 -2.5 -12.4 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0958 -2.5 -9.0 Oligoketide cyclase/lipid transport protein compare
Psest_0164 -2.4 -1.3 Glutaredoxin, GrxC family compare
Psest_0505 -2.4 -2.6 Putative effector of murein hydrolase compare
Psest_1659 -2.4 -3.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1012 -2.3 -5.7 Signal transduction histidine kinase compare
Psest_0740 -2.3 -2.3 Transcriptional regulator compare
Psest_3810 -2.2 -1.5 orotate phosphoribosyltransferase compare
Psest_1772 -2.2 -4.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1473 -2.1 -6.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2718 -2.1 -1.9 hypothetical protein compare
Psest_1013 -2.1 -2.5 phosphoribosylamine--glycine ligase compare
Psest_3159 -2.1 -6.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3818 -2.1 -8.3 endoribonuclease L-PSP, putative compare
Psest_3838 -2.0 -3.5 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_2847 -2.0 -3.7 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1474 -2.0 -1.9 phosphoribosylaminoimidazole synthetase compare
Psest_0013 -2.0 -6.9 Lauroyl/myristoyl acyltransferase compare
Psest_1704 -2.0 -1.3 Dehydrogenases (flavoproteins) compare
Psest_3322 -1.9 -15.2 TIGR02099 family protein compare
Psest_1557 -1.9 -6.2 Phosphoenolpyruvate carboxylase compare
Psest_2329 -1.8 -12.2 Transcriptional regulator compare
Psest_3339 -1.8 -6.9 Signal transduction histidine kinase compare
Psest_2855 -1.8 -2.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1661 -1.8 -1.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3762 -1.8 -3.8 iron donor protein CyaY compare
Psest_2651 -1.8 -4.5 DNA topoisomerase I, bacterial compare
Psest_0417 -1.8 -3.4 Acyl-CoA dehydrogenases compare
Psest_2850 -1.7 -1.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3670 -1.7 -9.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3351 -1.7 -5.3 peptide chain release factor 3 compare
Psest_0401 -1.7 -2.2 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_1335 -1.7 -11.0 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) conserved
Psest_1292 -1.7 -8.3 monothiol glutaredoxin, Grx4 family compare
Psest_2848 -1.7 -3.2 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_0442 -1.7 -2.9 ATPases of the AAA+ class compare
Psest_3222 -1.7 -3.1 Putative threonine efflux protein compare
Psest_1762 -1.6 -2.5 cytochrome c-type biogenesis protein CcmI compare
Psest_2027 -1.6 -8.9 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_1179 -1.6 -1.4 2-hydroxy-3-oxopropionate reductase compare
Psest_2001 -1.6 -1.7 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3816 -1.6 -1.4 DNA-directed RNA polymerase, omega subunit compare
Psest_2849 -1.5 -9.1 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
Psest_4287 -1.5 -5.0 Predicted glutamine amidotransferases compare
Psest_1986 -1.4 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_3129 -1.4 -1.0 tyrosine recombinase XerD compare
Psest_3458 -1.4 -4.2 hypothetical protein compare
Psest_2527 -1.4 -6.5 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2442 -1.4 -2.2 hypothetical protein compare
Psest_3092 -1.3 -1.6 ribonuclease III, bacterial compare
Psest_2325 -1.3 -9.3 alpha-L-glutamate ligase-related protein compare
Psest_4083 -1.3 -8.7 Predicted permease compare
Psest_0725 -1.3 -2.1 Negative regulator of beta-lactamase expression compare
Psest_2532 -1.3 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_3231 -1.3 -2.5 hypothetical protein compare
Psest_3837 -1.3 -4.9 malate synthase G compare
Psest_2490 -1.3 -7.2 succinyl-CoA synthetase, alpha subunit compare
Psest_3123 -1.3 -2.6 dihydroorotase, homodimeric type compare
Psest_2158 -1.3 -9.2 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_2851 -1.3 -9.0 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit compare
Psest_0259 -1.3 -1.4 cell division ATP-binding protein FtsE compare
Psest_1472 -1.3 -5.5 Protein of unknown function (DUF3108). compare
Psest_0175 -1.3 -6.0 Xaa-Pro aminopeptidase compare
Psest_2863 -1.3 -3.8 Transcriptional regulator compare
Psest_3994 -1.3 -5.9 Signal transduction histidine kinase compare
Psest_1177 -1.2 -3.7 pyruvate kinase compare
Psest_0097 -1.2 -1.5 phosphonates metabolism transcriptional regulator PhnF compare
Psest_4044 -1.2 -3.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0181 -1.2 -4.3 glycine cleavage system T protein compare
Psest_3139 -1.2 -3.5 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_1505 -1.2 -1.3 Organic radical activating enzymes compare
Psest_0716 -1.2 -1.7 Protein of unknown function (DUF3094). compare
Psest_2945 -1.2 -1.2 septum site-determining protein MinC compare
Psest_0316 -1.2 -2.1 Cytochrome c556 compare
Psest_4010 -1.2 -1.1 peroxiredoxin, OsmC subfamily compare
Psest_1947 -1.1 -1.1 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0795 -1.1 -3.3 ABC-type multidrug transport system, ATPase component compare
Psest_2067 -1.1 -1.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_4243 -1.1 -1.4 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1231 -1.1 -5.4 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_2491 -1.1 -4.1 succinyl-CoA synthetase, beta subunit compare
Psest_1511 -1.1 -3.3 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1313 -1.1 -1.2 Uncharacterized conserved small protein compare
Psest_3565 -1.1 -1.3 hypothetical protein compare
Psest_2531 -1.1 -7.0 cytochrome c oxidase accessory protein FixG compare
Psest_2037 -1.1 -4.3 uroporphyrin-III C-methyltransferase compare
Psest_0514 -1.1 -3.4 lytic murein transglycosylase B compare
Psest_2872 -1.1 -1.7 protein RecA compare
Psest_1506 -1.1 -3.6 queuosine biosynthesis protein QueC compare
Psest_3480 -1.1 -1.8 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_2122 -1.1 -1.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2708 -1.1 -5.9 transaldolase compare
Psest_4219 -1.1 -1.8 DNA polymerase I compare
Psest_2324 -1.0 -8.0 hypothetical protein compare
Psest_3419 -1.0 -4.6 Predicted transcriptional regulators compare
Psest_0529 -1.0 -6.2 Putative Mg2+ and Co2+ transporter CorC compare
Psest_3908 -1.0 -1.2 Cytochrome c553 compare
Psest_3878 -1.0 -2.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3398 -1.0 -2.9 large conductance mechanosensitive channel protein compare
Psest_1631 -1.0 -2.1 Uncharacterized conserved small protein compare
Psest_0955 -1.0 -3.3 D,L-lactate:H+ symporter (from data) compare
Psest_3732 -1.0 -4.5 polyphosphate kinase 1 compare
Psest_3323 -1.0 -3.7 ribonuclease, Rne/Rng family compare
Psest_4280 -1.0 -2.6 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_2975 -1.0 -2.2 tRNA_Arg_CCT compare
Psest_4396 -1.0 -4.8 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2539 -1.0 -2.6 adenine phosphoribosyltransferase compare
Psest_0260 -1.0 -1.0 Cell division protein compare
Psest_1871 -1.0 -4.8 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_2768 -0.9 -1.3 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_2643 -0.9 -2.1 Beta-glucosidase-related glycosidases compare
Psest_1510 -0.9 -2.3 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2846 -0.9 -2.5 monovalent cation/proton antiporter, MnhG/PhaG subunit compare
Psest_1270 -0.9 -1.8 hypothetical protein compare
Psest_3664 -0.9 -1.1 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3575 -0.9 -4.1 Arabinose efflux permease compare
Psest_4222 -0.9 -5.8 Predicted Rossmann fold nucleotide-binding protein compare
Psest_4098 -0.9 -2.9 Superfamily I DNA and RNA helicases compare
Psest_1238 -0.9 -4.1 Predicted membrane protein/domain compare
Psest_3084 -0.9 -1.7 methyltransferase, putative compare
Psest_1651 -0.9 -3.9 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_4067 -0.9 -2.4 Predicted membrane protein compare
Psest_2017 -0.9 -2.8 Predicted acyltransferase compare
Psest_2946 -0.9 -2.4 septum site-determining protein MinD compare
Psest_1498 -0.9 -1.6 tol-pal system-associated acyl-CoA thioesterase compare
Psest_2786 -0.9 -0.9 Domain of unknown function (DUF3597). compare
Psest_1522 -0.9 -1.7 hypothetical protein compare
Psest_2380 -0.9 -6.8 Uncharacterized conserved protein compare
Psest_2999 -0.9 -3.7 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0093 -0.9 -2.9 Uncharacterized enzyme of phosphonate metabolism compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source Glycolic Acid in Pseudomonas stutzeri RCH2

For carbon source Glycolic Acid across organisms