Experiment set10H30 for Pseudomonas stutzeri RCH2

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3944 -7.6 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3648 -7.0 -4.9 anthranilate phosphoribosyltransferase compare
Psest_3647 -7.0 -4.8 Indole-3-glycerol phosphate synthase compare
Psest_0508 -6.8 -9.4 gamma-glutamyl phosphate reductase compare
Psest_2578 -6.7 -9.2 O-succinylhomoserine sulfhydrylase compare
Psest_0279 -6.6 -6.5 methionine biosynthesis protein MetW compare
Psest_3650 -6.6 -11.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3866 -6.5 -16.3 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0062 -6.5 -9.9 tryptophan synthase, alpha subunit compare
Psest_0153 -6.3 -10.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0155 -6.0 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3384 -6.0 -8.2 glutamate 5-kinase compare
Psest_3298 -5.9 -12.6 histidinol dehydrogenase compare
Psest_2590 -5.8 -2.0 3-isopropylmalate dehydratase, small subunit compare
Psest_3299 -5.8 -14.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0063 -5.7 -12.3 tryptophan synthase, beta subunit compare
Psest_2584 -5.7 -6.8 Phosphoribosylanthranilate isomerase compare
Psest_1473 -5.6 -7.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0152 -5.6 -6.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_3864 -5.6 -17.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0280 -5.4 -15.8 homoserine O-acetyltransferase compare
Psest_0326 -5.4 -16.9 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3721 -5.4 -10.9 Malic enzyme compare
Psest_3649 -5.2 -12.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2591 -5.2 -5.0 3-isopropylmalate dehydratase, large subunit compare
Psest_4269 -5.2 -12.9 C4-dicarboxylate transporter, DctQ subunit (from data) conserved
Psest_4267 -5.1 -7.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains conserved
Psest_3377 -5.1 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0313 -4.9 -7.4 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3943 -4.8 -6.6 Phosphoribosyl-AMP cyclohydrolase compare
Psest_4270 -4.8 -12.1 TRAP transporter, DctM subunit compare
Psest_0325 -4.6 -14.0 Putative threonine efflux protein compare
Psest_4268 -4.6 -17.9 tripartite ATP-independent periplasmic transporter solute receptor, DctP family conserved
Psest_1037 -4.6 -3.9 acetolactate synthase, small subunit compare
Psest_2589 -4.2 -11.6 3-isopropylmalate dehydrogenase compare
Psest_0687 -4.2 -11.8 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3998 -3.9 -9.4 glutamate--cysteine ligase compare
Psest_3818 -3.9 -11.8 endoribonuclease L-PSP, putative compare
Psest_1686 -3.9 -7.7 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2579 -3.8 -2.6 amidophosphoribosyltransferase compare
Psest_1920 -3.8 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4266 -3.6 -10.7 Signal transduction histidine kinase regulating C4-dicarboxylate transport system conserved
Psest_0722 -3.5 -9.2 Predicted ATPase compare
Psest_1772 -3.3 -7.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1295 -3.2 -8.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2329 -3.0 -16.6 Transcriptional regulator compare
Psest_4298 -2.9 -2.0 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2088 -2.9 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_3297 -2.7 -13.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1012 -2.6 -7.0 Signal transduction histidine kinase compare
Psest_3129 -2.6 -2.1 tyrosine recombinase XerD compare
Psest_2848 -2.5 -5.9 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_2651 -2.5 -6.5 DNA topoisomerase I, bacterial compare
Psest_3988 -2.5 -11.4 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3226 -2.5 -1.9 Predicted membrane protein compare
Psest_4191 -2.4 -4.7 Transcriptional regulator compare
Psest_1657 -2.3 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0327 -2.3 -3.6 Transcriptional regulator compare
Psest_1013 -2.3 -2.2 phosphoribosylamine--glycine ligase compare
Psest_2382 -2.3 -11.0 coenzyme PQQ biosynthesis probable peptidase PqqF compare
Psest_0489 -2.3 -2.2 phosphoserine phosphatase SerB compare
Psest_3810 -2.3 -1.5 orotate phosphoribosyltransferase compare
Psest_1474 -2.2 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_2847 -2.2 -6.8 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_2849 -2.1 -11.0 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
Psest_1704 -2.1 -1.4 Dehydrogenases (flavoproteins) compare
Psest_0442 -2.0 -2.7 ATPases of the AAA+ class compare
Psest_3159 -2.0 -6.5 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2851 -1.9 -14.3 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit compare
Psest_2527 -1.9 -7.9 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1540 -1.8 -2.7 biotin-dependent carboxylase uncharacterized domain compare
Psest_2846 -1.8 -5.9 monovalent cation/proton antiporter, MnhG/PhaG subunit compare
Psest_3766 -1.7 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_2850 -1.6 -2.1 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3536 -1.6 -2.0 hypothetical protein compare
Psest_1947 -1.5 -1.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0334 -1.5 -4.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3123 -1.4 -2.7 dihydroorotase, homodimeric type compare
Psest_1655 -1.4 -4.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2333 -1.4 -1.5 Protein of unknown function (DUF3359). compare
Psest_1660 -1.4 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2285 -1.4 -3.6 ATP-dependent protease La compare
Psest_0740 -1.4 -2.1 Transcriptional regulator compare
Psest_4044 -1.4 -3.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0718 -1.3 -3.7 nicotinate-nucleotide pyrophosphorylase compare
Psest_1277 -1.3 -9.2 2-isopropylmalate synthase, yeast type compare
Psest_2872 -1.3 -1.5 protein RecA compare
Psest_0999 -1.3 -2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3860 -1.3 -1.7 Predicted permeases compare
Psest_2809 -1.3 -2.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1656 -1.2 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2532 -1.2 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1659 -1.2 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2719 -1.2 -1.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_2862 -1.2 -7.0 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0958 -1.1 -5.4 Oligoketide cyclase/lipid transport protein compare
Psest_3890 -1.1 -1.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2090 -1.1 -2.0 Protein of unknown function (DUF2970). compare
Psest_0297 -1.1 -2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3322 -1.1 -9.4 TIGR02099 family protein compare
Psest_2083 -1.1 -4.6 Putative sterol carrier protein compare
Psest_2613 -1.1 -2.0 hypothetical protein compare
Psest_3843 -1.1 -5.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0959 -1.0 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0498 -1.0 -1.1 ribosome small subunit-dependent GTPase A compare
Psest_3664 -1.0 -0.9 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2585 -1.0 -1.3 pseudouridylate synthase I compare
Psest_2304 -1.0 -1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1139 -0.9 -2.9 PAS domain S-box compare
Psest_2530 -0.9 -3.3 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_4042 -0.9 -3.0 hypothetical protein compare
Psest_1958 -0.9 -2.4 Glutaredoxin-like domain (DUF836). compare
Psest_2531 -0.8 -5.4 cytochrome c oxidase accessory protein FixG compare
Psest_2037 -0.8 -2.9 uroporphyrin-III C-methyltransferase compare
Psest_0609 -0.8 -1.0 hypothetical protein compare
Psest_2863 -0.8 -3.0 Transcriptional regulator compare
Psest_1496 -0.8 -0.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_0359 -0.8 -2.8 Transcriptional regulators compare
Psest_1919 -0.8 -2.7 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_0491 -0.8 -4.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3806 -0.8 -3.9 Phosphomannomutase compare
Psest_1270 -0.8 -2.3 hypothetical protein compare
Psest_3762 -0.8 -2.5 iron donor protein CyaY compare
Psest_3351 -0.8 -3.1 peptide chain release factor 3 compare
Psest_2048 -0.8 -2.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1313 -0.8 -1.5 Uncharacterized conserved small protein compare
Psest_1724 -0.8 -1.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3651 -0.8 -2.8 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0401 -0.8 -1.3 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0300 -0.8 -4.3 Methyl-accepting chemotaxis protein compare
Psest_1824 -0.8 -2.4 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_4219 -0.8 -1.2 DNA polymerase I compare
Psest_4078 -0.8 -1.6 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2104 -0.8 -1.5 IscR-regulated protein YhgI compare
Psest_2806 -0.8 -3.2 RNA polymerase sigma factor RpoS compare
Psest_1242 -0.8 -1.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2714 -0.7 -1.7 7-cyano-7-deazaguanine reductase compare
Psest_4102 -0.7 -2.4 peroxiredoxin, Ohr subfamily compare
Psest_4003 -0.7 -3.7 TIGR00153 family protein compare
Psest_2325 -0.7 -4.7 alpha-L-glutamate ligase-related protein compare
Psest_0852 -0.7 -3.7 glucose-6-phosphate 1-dehydrogenase compare
Psest_1082 -0.7 -1.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1506 -0.7 -3.4 queuosine biosynthesis protein QueC compare
Psest_0510 -0.7 -2.3 iojap-like ribosome-associated protein compare
Psest_0133 -0.7 -1.1 type VI secretion protein, VC_A0107 family compare
Psest_0466 -0.7 -2.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2323 -0.7 -5.4 Uncharacterized protein conserved in archaea compare
Psest_1505 -0.7 -1.6 Organic radical activating enzymes compare
Psest_1492 -0.7 -4.8 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_2324 -0.7 -5.8 hypothetical protein compare
Psest_0998 -0.7 -1.6 poly(A) polymerase compare
Psest_2711 -0.7 -2.1 PilZ domain. compare
Psest_3323 -0.7 -2.7 ribonuclease, Rne/Rng family compare
Psest_0760 -0.7 -2.8 Polyketide cyclase / dehydrase and lipid transport. compare
Psest_3767 -0.7 -1.7 tyrosine recombinase XerC compare
Psest_4345 -0.7 -4.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0378 -0.7 -2.1 Lactate dehydrogenase and related dehydrogenases compare
Psest_2327 -0.7 -3.2 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_3114 -0.6 -3.6 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1103 -0.6 -1.5 GTP-binding protein YchF compare
Psest_2183 -0.6 -3.4 Transcriptional regulator compare
Psest_3014 -0.6 -1.2 cob(I)alamin adenosyltransferase compare
Psest_4325 -0.6 -1.0 hypothetical protein compare
Psest_0170 -0.6 -2.6 5,10-methenyltetrahydrofolate synthetase compare
Psest_1235 -0.6 -3.2 Leucyl aminopeptidase compare
Psest_2025 -0.6 -0.8 cold shock domain protein CspD compare
Psest_4276 -0.6 -1.8 hypothetical protein compare
Psest_1479 -0.6 -1.8 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_2580 -0.6 -2.6 Uncharacterized membrane protein, required for colicin V production compare
Psest_2944 -0.6 -0.9 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0284 -0.6 -4.5 pyridoxal phosphate enzyme, YggS family compare
Psest_3419 -0.6 -2.8 Predicted transcriptional regulators compare
Psest_1661 -0.6 -1.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_4303 -0.6 -1.5 HEAT repeat. compare
Psest_4370 -0.6 -1.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1563 -0.6 -1.2 Protein of unknown function (DUF548). compare
Psest_4108 -0.6 -1.7 seryl-tRNA(sec) selenium transferase compare
Psest_1238 -0.6 -3.7 Predicted membrane protein/domain compare
Psest_3899 -0.6 -2.3 Predicted phosphoribosyltransferases compare
Psest_0218 -0.6 -1.8 Acyl-CoA hydrolase compare
Psest_0057 -0.6 -2.5 Predicted transcriptional regulators compare
Psest_0482 -0.6 -2.2 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_3932 -0.6 -2.5 nitrogen regulation protein NR(I) compare
Psest_0298 -0.6 -1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0154 -0.6 -1.5 Uncharacterized conserved protein compare
Psest_2940 -0.5 -2.2 Predicted membrane protein compare
Psest_0393 -0.5 -3.0 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2030 -0.5 -1.7 leucyl/phenylalanyl-tRNA--protein transferase compare
Psest_0292 -0.5 -1.1 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_1006 -0.5 -3.5 dTDP-4-dehydrorhamnose reductase compare
Psest_2945 -0.5 -0.6 septum site-determining protein MinC compare
Psest_3069 -0.5 -1.2 3-oxoadipate enol-lactonase compare
Psest_3199 -0.5 -2.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_2317 -0.5 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_1640 -0.5 -4.2 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1998 -0.5 -2.0 Entner-Doudoroff aldolase compare
Psest_1001 -0.5 -1.3 hypothetical protein compare
Psest_0515 -0.5 -2.0 rare lipoprotein A compare
Psest_0306 -0.5 -4.1 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3112 -0.5 -1.9 electron transport complex, RnfABCDGE type, A subunit compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Pseudomonas stutzeri RCH2

For carbon source Sodium succinate dibasic hexahydrate across organisms