Experiment set10H3 for Pseudomonas stutzeri RCH2

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0508 -7.2 -8.5 gamma-glutamyl phosphate reductase compare
Psest_0279 -6.9 -6.7 methionine biosynthesis protein MetW compare
Psest_3866 -6.5 -17.8 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3944 -6.4 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1897 -6.4 -16.4 ABC-type sugar transport systems, permease components compare
Psest_2578 -6.3 -14.0 O-succinylhomoserine sulfhydrylase compare
Psest_0855 -6.2 -8.5 NAD-dependent aldehyde dehydrogenases compare
Psest_0155 -6.1 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3648 -6.1 -10.2 anthranilate phosphoribosyltransferase compare
Psest_3384 -6.1 -9.3 glutamate 5-kinase compare
Psest_2584 -6.0 -5.9 Phosphoribosylanthranilate isomerase compare
Psest_0852 -6.0 -9.1 glucose-6-phosphate 1-dehydrogenase compare
Psest_0153 -6.0 -14.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3647 -6.0 -8.2 Indole-3-glycerol phosphate synthase compare
Psest_2590 -6.0 -2.0 3-isopropylmalate dehydratase, small subunit compare
Psest_3650 -6.0 -17.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1898 -6.0 -14.9 ABC-type sugar transport system, permease component compare
Psest_3864 -5.8 -17.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0152 -5.8 -8.4 Imidazoleglycerol-phosphate dehydratase compare
Psest_1895 -5.7 -11.5 Signal transduction histidine kinase compare
Psest_0063 -5.7 -13.2 tryptophan synthase, beta subunit compare
Psest_0062 -5.6 -15.5 tryptophan synthase, alpha subunit compare
Psest_0853 -5.6 -6.7 6-phosphogluconolactonase compare
Psest_1473 -5.6 -8.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3298 -5.5 -13.3 histidinol dehydrogenase compare
Psest_2591 -5.4 -5.2 3-isopropylmalate dehydratase, large subunit compare
Psest_3649 -5.3 -13.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0326 -5.2 -19.3 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0280 -5.1 -15.3 homoserine O-acetyltransferase compare
Psest_3299 -5.0 -15.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0325 -4.8 -14.2 Putative threonine efflux protein compare
Psest_0687 -4.8 -12.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0313 -4.8 -8.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0849 -4.5 -12.9 6-phosphogluconate dehydratase compare
Psest_2589 -4.5 -12.4 3-isopropylmalate dehydrogenase compare
Psest_0850 -4.4 -13.4 glucokinase, proteobacterial type compare
Psest_1899 -4.4 -6.1 ABC-type sugar transport systems, ATPase components compare
Psest_3190 -4.0 -9.6 pyruvate kinase compare
Psest_3943 -3.9 -5.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_4088 -3.9 -6.4 Transcriptional regulators compare
Psest_2579 -3.9 -3.8 amidophosphoribosyltransferase compare
Psest_1896 -3.9 -3.9 ABC-type sugar transport system, periplasmic component compare
Psest_3818 -3.9 -11.7 endoribonuclease L-PSP, putative compare
Psest_1295 -3.7 -9.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1037 -3.6 -2.3 acetolactate synthase, small subunit compare
Psest_3226 -3.5 -2.0 Predicted membrane protein compare
Psest_0327 -3.5 -6.5 Transcriptional regulator compare
Psest_0999 -3.4 -2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2988 -3.3 -9.8 aspartate kinase, monofunctional class compare
Psest_1772 -2.9 -6.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0489 -2.9 -2.0 phosphoserine phosphatase SerB compare
Psest_3297 -2.7 -12.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4191 -2.7 -5.1 Transcriptional regulator compare
Psest_4085 -2.7 -16.3 Biotin carboxylase compare
Psest_4084 -2.6 -16.8 oxaloacetate decarboxylase alpha subunit compare
Psest_2329 -2.6 -17.2 Transcriptional regulator compare
Psest_3766 -2.5 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_3998 -2.4 -8.3 glutamate--cysteine ligase compare
Psest_1686 -2.4 -6.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3100 -2.3 -4.1 RNA polymerase sigma factor RpoE compare
Psest_1474 -2.3 -1.6 phosphoribosylaminoimidazole synthetase compare
Psest_3159 -2.3 -6.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_4086 -2.2 -11.1 Transcriptional regulator compare
Psest_3810 -2.1 -2.0 orotate phosphoribosyltransferase compare
Psest_2025 -2.1 -1.9 cold shock domain protein CspD compare
Psest_4003 -2.0 -7.1 TIGR00153 family protein compare
Psest_4406 -2.0 -1.8 hypothetical protein compare
Psest_1704 -2.0 -1.8 Dehydrogenases (flavoproteins) compare
Psest_2718 -1.9 -2.1 hypothetical protein compare
Psest_2333 -1.9 -1.7 Protein of unknown function (DUF3359). compare
Psest_3322 -1.9 -15.4 TIGR02099 family protein compare
Psest_0442 -1.8 -2.7 ATPases of the AAA+ class compare
Psest_2104 -1.8 -2.4 IscR-regulated protein YhgI compare
Psest_4044 -1.8 -3.2 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1657 -1.8 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1013 -1.7 -3.2 phosphoribosylamine--glycine ligase compare
Psest_2527 -1.7 -7.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1000 -1.7 -9.1 PAS domain S-box compare
Psest_1012 -1.7 -4.7 Signal transduction histidine kinase compare
Psest_0498 -1.6 -1.2 ribosome small subunit-dependent GTPase A compare
Psest_0958 -1.6 -7.2 Oligoketide cyclase/lipid transport protein compare
Psest_3129 -1.6 -2.0 tyrosine recombinase XerD compare
Psest_1814 -1.6 -10.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2083 -1.6 -6.3 Putative sterol carrier protein compare
Psest_1947 -1.6 -1.1 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2975 -1.5 -3.7 tRNA_Arg_CCT compare
Psest_1111 -1.5 -3.8 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_0466 -1.5 -4.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3178 -1.5 -4.4 formyltetrahydrofolate deformylase compare
Psest_1994 -1.5 -4.5 Amidases related to nicotinamidase compare
Psest_0558 -1.4 -1.4 urease, beta subunit compare
Psest_2775 -1.4 -3.5 Glycerol-3-phosphate dehydrogenase compare
Psest_1660 -1.4 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0411 -1.4 -9.2 biotin synthetase compare
Psest_2285 -1.4 -3.9 ATP-dependent protease La compare
Psest_1167 -1.3 -1.6 hypothetical protein compare
Psest_0212 -1.3 -2.1 exodeoxyribonuclease V, gamma subunit compare
Psest_1805 -1.3 -1.8 integration host factor, beta subunit compare
Psest_2809 -1.3 -2.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2810 -1.3 -4.8 5'/3'-nucleotidase SurE compare
Psest_1001 -1.3 -2.9 hypothetical protein compare
Psest_1505 -1.3 -2.3 Organic radical activating enzymes compare
Psest_0359 -1.3 -4.3 Transcriptional regulators compare
Psest_0208 -1.2 -6.7 Uncharacterized protein conserved in bacteria compare
Psest_2530 -1.2 -4.7 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1518 -1.2 -3.1 tRNA_Ser_CGA compare
Psest_2719 -1.2 -2.1 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3960 -1.2 -1.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1506 -1.2 -5.0 queuosine biosynthesis protein QueC compare
Psest_2613 -1.1 -2.1 hypothetical protein compare
Psest_4103 -1.1 -1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_1974 -1.1 -3.1 integration host factor, alpha subunit compare
Psest_3850 -1.1 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4310 -1.1 -1.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2945 -1.1 -1.6 septum site-determining protein MinC compare
Psest_3843 -1.0 -5.3 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0277 -1.0 -1.6 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3890 -1.0 -2.2 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3296 -1.0 -0.7 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_1087 -1.0 -1.4 uncharacterized peroxidase-related enzyme compare
Psest_0170 -1.0 -4.7 5,10-methenyltetrahydrofolate synthetase compare
Psest_1804 -1.0 -1.7 Superfamily II DNA and RNA helicases compare
Psest_0306 -1.0 -7.5 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0959 -1.0 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3862 -1.0 -7.3 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2532 -1.0 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1486 -1.0 -2.7 hypothetical protein compare
Psest_4170 -0.9 -1.9 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3305 -0.9 -4.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0413 -0.9 -4.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2531 -0.9 -6.3 cytochrome c oxidase accessory protein FixG compare
Psest_3123 -0.9 -2.0 dihydroorotase, homodimeric type compare
Psest_2946 -0.9 -2.0 septum site-determining protein MinD compare
Psest_2712 -0.9 -3.2 Surface lipoprotein compare
Psest_0297 -0.9 -3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1417 -0.9 -1.4 hypothetical protein compare
Psest_3816 -0.9 -0.9 DNA-directed RNA polymerase, omega subunit compare
Psest_2967 -0.9 -1.8 flagellar basal-body rod protein FlgC compare
Psest_1695 -0.9 -2.1 Tfp pilus assembly protein PilZ compare
Psest_2293 -0.8 -1.2 hypothetical protein compare
Psest_1292 -0.8 -4.4 monothiol glutaredoxin, Grx4 family compare
Psest_2714 -0.8 -1.9 7-cyano-7-deazaguanine reductase compare
Psest_0060 -0.8 -2.2 Predicted Fe-S protein compare
Psest_3044 -0.8 -3.9 deoxycytidine triphosphate deaminase compare
Psest_3927 -0.8 -3.3 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_4098 -0.8 -1.8 Superfamily I DNA and RNA helicases compare
Psest_3790 -0.8 -4.9 Cytochrome c5 compare
Psest_1540 -0.8 -1.3 biotin-dependent carboxylase uncharacterized domain compare
Psest_2565 -0.8 -2.1 Transcriptional regulator compare
Psest_3767 -0.8 -3.5 tyrosine recombinase XerC compare
Psest_0857 -0.8 -1.9 Membrane transporters of cations and cationic drugs compare
Psest_0175 -0.8 -3.7 Xaa-Pro aminopeptidase compare
Psest_0078 -0.8 -1.2 hypothetical protein compare
Psest_2748 -0.8 -1.3 Transcriptional regulator compare
Psest_1725 -0.8 -5.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0538 -0.8 -7.1 Signal transduction histidine kinase compare
Psest_4280 -0.8 -2.3 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_2088 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2566 -0.8 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3306 -0.8 -3.0 conserved hypothetical integral membrane protein compare
Psest_3287 -0.7 -3.3 Type II secretory pathway, component PulF compare
Psest_3496 -0.7 -1.7 Predicted metal-binding protein compare
Psest_3307 -0.7 -3.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1322 -0.7 -1.2 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_3819 -0.7 -2.8 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0154 -0.7 -2.0 Uncharacterized conserved protein compare
Psest_0969 -0.7 -1.2 transcription elongation factor GreA compare
Psest_0870 -0.7 -5.1 Alpha-glucosidase (EC 3.2.1.20) (from data) compare
Psest_2798 -0.7 -2.5 Truncated hemoglobins compare
Psest_1241 -0.7 -4.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_2331 -0.7 -4.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_1510 -0.7 -2.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2870 -0.7 -2.2 TIGR00730 family protein compare
Psest_1242 -0.7 -1.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4161 -0.7 -1.9 Flagellar basal body-associated protein compare
Psest_3731 -0.7 -5.5 exopolyphosphatase compare
Psest_1434 -0.7 -3.9 NADPH:quinone reductase and related Zn-dependent oxidoreductases compare
Psest_0693 -0.7 -5.9 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_1888 -0.7 -1.0 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2066 -0.7 -1.6 ABC-type uncharacterized transport system, permease component compare
Psest_1277 -0.7 -4.9 2-isopropylmalate synthase, yeast type compare
Psest_4049 -0.7 -1.3 hypothetical protein compare
Psest_2538 -0.7 -1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0520 -0.7 -0.7 hypothetical protein compare
Psest_0415 -0.7 -2.8 dethiobiotin synthase compare
Psest_1248 -0.7 -3.3 RNA methyltransferase, TrmH family, group 1 compare
Psest_0412 -0.7 -5.1 8-amino-7-oxononanoate synthase compare
Psest_1920 -0.7 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0718 -0.7 -2.1 nicotinate-nucleotide pyrophosphorylase compare
Psest_2047 -0.7 -2.2 Signal transduction histidine kinase compare
Psest_1813 -0.7 -4.5 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_4316 -0.6 -1.8 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_2651 -0.6 -2.9 DNA topoisomerase I, bacterial compare
Psest_0309 -0.6 -0.8 RND family efflux transporter, MFP subunit compare
Psest_4403 -0.6 -2.6 hypothetical protein compare
Psest_0842 -0.6 -1.1 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_2325 -0.6 -4.3 alpha-L-glutamate ligase-related protein compare
Psest_3355 -0.6 -2.6 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Psest_0284 -0.6 -4.7 pyridoxal phosphate enzyme, YggS family compare
Psest_0207 -0.6 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments

For carbon source D-Glucose across organisms