Experiment set10H25 for Pseudomonas stutzeri RCH2

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0152 -7.4 -7.2 Imidazoleglycerol-phosphate dehydratase compare
Psest_1037 -7.1 -4.4 acetolactate synthase, small subunit compare
Psest_3648 -7.0 -9.6 anthranilate phosphoribosyltransferase compare
Psest_3650 -6.9 -14.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0508 -6.7 -10.2 gamma-glutamyl phosphate reductase compare
Psest_0062 -6.6 -11.0 tryptophan synthase, alpha subunit compare
Psest_3944 -6.5 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0153 -6.5 -12.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2591 -6.4 -4.4 3-isopropylmalate dehydratase, large subunit compare
Psest_0279 -6.3 -8.6 methionine biosynthesis protein MetW compare
Psest_0155 -6.3 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0952 -6.3 -4.3 Uncharacterized conserved protein compare
Psest_3298 -6.2 -13.3 histidinol dehydrogenase compare
Psest_3818 -6.2 -11.1 endoribonuclease L-PSP, putative compare
Psest_3866 -6.1 -21.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3647 -6.0 -9.2 Indole-3-glycerol phosphate synthase compare
Psest_2590 -6.0 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_1473 -5.9 -9.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0326 -5.9 -19.3 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3864 -5.9 -18.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0063 -5.8 -13.9 tryptophan synthase, beta subunit compare
Psest_0954 -5.7 -12.3 Fe-S oxidoreductase compare
Psest_3226 -5.7 -1.7 Predicted membrane protein compare
Psest_3384 -5.7 -12.1 glutamate 5-kinase compare
Psest_3649 -5.4 -13.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2578 -5.4 -18.6 O-succinylhomoserine sulfhydrylase compare
Psest_0280 -5.3 -17.4 homoserine O-acetyltransferase compare
Psest_0953 -5.1 -12.3 iron-sulfur cluster-binding protein compare
Psest_3299 -5.1 -17.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2584 -5.1 -8.4 Phosphoribosylanthranilate isomerase compare
Psest_0325 -4.9 -14.8 Putative threonine efflux protein compare
Psest_3721 -4.8 -12.8 Malic enzyme compare
Psest_0313 -4.8 -9.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0687 -4.7 -13.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2589 -4.5 -15.8 3-isopropylmalate dehydrogenase compare
Psest_2088 -4.5 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_3943 -4.3 -6.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3998 -4.2 -10.4 glutamate--cysteine ligase compare
Psest_1295 -4.0 -8.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2579 -3.8 -4.6 amidophosphoribosyltransferase compare
Psest_4085 -3.8 -17.1 Biotin carboxylase compare
Psest_3297 -3.6 -15.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2329 -3.5 -20.9 Transcriptional regulator compare
Psest_4084 -3.5 -16.7 oxaloacetate decarboxylase alpha subunit compare
Psest_4086 -3.5 -16.8 Transcriptional regulator compare
Psest_0170 -3.4 -8.9 5,10-methenyltetrahydrofolate synthetase compare
Psest_0327 -3.4 -6.3 Transcriptional regulator compare
Psest_0415 -3.4 -7.7 dethiobiotin synthase compare
Psest_0411 -3.2 -13.1 biotin synthetase compare
Psest_2333 -3.2 -1.8 Protein of unknown function (DUF3359). compare
Psest_1772 -3.1 -7.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0489 -2.9 -2.0 phosphoserine phosphatase SerB compare
Psest_2585 -2.7 -1.7 pseudouridylate synthase I compare
Psest_0955 -2.6 -6.4 D,L-lactate:H+ symporter (from data) compare
Psest_1013 -2.6 -1.8 phosphoribosylamine--glycine ligase compare
Psest_0306 -2.4 -15.0 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3159 -2.4 -7.4 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1679 -2.3 -2.3 ribonuclease, Rne/Rng family compare
Psest_1474 -2.3 -2.2 phosphoribosylaminoimidazole synthetase compare
Psest_3338 -2.3 -2.9 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0442 -2.2 -3.0 ATPases of the AAA+ class compare
Psest_0412 -2.2 -11.6 8-amino-7-oxononanoate synthase compare
Psest_0951 -2.1 -9.8 FAD/FMN-containing dehydrogenases compare
Psest_0498 -2.0 -1.6 ribosome small subunit-dependent GTPase A compare
Psest_1012 -1.9 -5.1 Signal transduction histidine kinase compare
Psest_4005 -1.9 -6.8 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_1686 -1.9 -4.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2090 -1.9 -4.0 Protein of unknown function (DUF2970). compare
Psest_3810 -1.9 -2.1 orotate phosphoribosyltransferase compare
Psest_0413 -1.8 -6.6 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0300 -1.8 -8.4 Methyl-accepting chemotaxis protein compare
Psest_1724 -1.8 -4.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3301 -1.8 -3.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_4191 -1.8 -4.1 Transcriptional regulator compare
Psest_2714 -1.7 -2.4 7-cyano-7-deazaguanine reductase compare
Psest_3806 -1.7 -8.3 Phosphomannomutase compare
Psest_0193 -1.7 -1.7 conserved hypothetical protein compare
Psest_4044 -1.7 -4.0 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3286 -1.7 -6.1 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_3288 -1.6 -10.1 type IV-A pilus assembly ATPase PilB compare
Psest_2324 -1.6 -12.5 hypothetical protein compare
Psest_0414 -1.6 -5.7 biotin biosynthesis protein BioC compare
Psest_3129 -1.6 -1.4 tyrosine recombinase XerD compare
Psest_0706 -1.6 -8.3 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_2527 -1.6 -7.1 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1277 -1.5 -10.3 2-isopropylmalate synthase, yeast type compare
Psest_0491 -1.5 -9.0 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0297 -1.5 -5.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0296 -1.5 -7.9 glutathione synthetase, prokaryotic compare
Psest_2104 -1.5 -2.3 IscR-regulated protein YhgI compare
Psest_2323 -1.5 -9.4 Uncharacterized protein conserved in archaea compare
Psest_2325 -1.4 -8.1 alpha-L-glutamate ligase-related protein compare
Psest_2327 -1.4 -7.3 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_3777 -1.4 -4.2 diguanylate cyclase (GGDEF) domain compare
Psest_0722 -1.4 -7.4 Predicted ATPase compare
Psest_1292 -1.4 -8.0 monothiol glutaredoxin, Grx4 family compare
Psest_2037 -1.4 -7.2 uroporphyrin-III C-methyltransferase compare
Psest_1947 -1.4 -1.3 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0393 -1.4 -6.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1986 -1.4 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_3123 -1.4 -3.0 dihydroorotase, homodimeric type compare
Psest_3717 -1.3 -5.2 Tfp pilus assembly protein PilO compare
Psest_3716 -1.3 -6.7 Tfp pilus assembly protein PilP compare
Psest_3715 -1.3 -9.7 type IV pilus secretin (or competence protein) PilQ compare
Psest_2719 -1.3 -2.1 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3766 -1.3 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3289 -1.3 -6.3 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0285 -1.3 -7.6 pilus retraction protein PilT compare
Psest_1260 -1.3 -5.9 type IV pilus biogenesis/stability protein PilW compare
Psest_0024 -1.3 -6.8 LysM domain. compare
Psest_3535 -1.3 -3.3 hypothetical protein compare
Psest_0284 -1.3 -9.0 pyridoxal phosphate enzyme, YggS family compare
Psest_4219 -1.2 -2.3 DNA polymerase I compare
Psest_2530 -1.2 -5.0 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3664 -1.2 -1.1 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3719 -1.2 -8.1 type IV pilus assembly protein PilM compare
Psest_1509 -1.2 -6.0 quinolinate synthetase complex, A subunit compare
Psest_2955 -1.2 -1.9 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_0161 -1.2 -2.7 Membrane-bound metallopeptidase compare
Psest_2988 -1.2 -5.2 aspartate kinase, monofunctional class compare
Psest_2612 -1.2 -3.7 hypothetical protein compare
Psest_0164 -1.2 -1.1 Glutaredoxin, GrxC family compare
Psest_4310 -1.1 -1.1 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3375 -1.1 -5.0 prepilin-type N-terminal cleavage/methylation domain compare
Psest_2946 -1.1 -3.4 septum site-determining protein MinD compare
Psest_0958 -1.1 -5.4 Oligoketide cyclase/lipid transport protein compare
Psest_2586 -1.1 -8.6 FimV N-terminal domain compare
Psest_0138 -1.1 -6.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1242 -1.0 -1.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0999 -1.0 -2.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2810 -1.0 -3.8 5'/3'-nucleotidase SurE compare
Psest_3843 -1.0 -5.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0705 -1.0 -6.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1704 -1.0 -1.4 Dehydrogenases (flavoproteins) compare
Psest_3767 -1.0 -3.7 tyrosine recombinase XerC compare
Psest_3351 -1.0 -4.2 peptide chain release factor 3 compare
Psest_1103 -1.0 -3.4 GTP-binding protein YchF compare
Psest_0139 -1.0 -3.5 ABC-type histidine transport system, ATPase component compare
Psest_2316 -1.0 -7.1 phosphoenolpyruvate synthase compare
Psest_0359 -1.0 -3.5 Transcriptional regulators compare
Psest_1695 -1.0 -2.0 Tfp pilus assembly protein PilZ compare
Psest_0277 -1.0 -1.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_4345 -1.0 -6.1 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2446 -1.0 -2.4 acetyl-CoA acetyltransferases compare
Psest_2447 -1.0 -1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0575 -1.0 -0.9 HrpA-like helicases compare
Psest_0691 -1.0 -6.9 ribonuclease R compare
Psest_2850 -1.0 -1.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1510 -0.9 -3.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_4363 -0.9 -5.2 ATPases involved in chromosome partitioning compare
Psest_3809 -0.9 -2.5 hypothetical protein compare
Psest_0533 -0.9 -4.0 Sel1 repeat. compare
Psest_3322 -0.9 -7.8 TIGR02099 family protein compare
Psest_0136 -0.9 -6.1 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3573 -0.9 -2.5 dTDP-4-dehydrorhamnose reductase compare
Psest_2907 -0.9 -1.4 Protein of unknown function (DUF3618). compare
Psest_4083 -0.9 -6.4 Predicted permease compare
Psest_0334 -0.9 -1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1111 -0.9 -3.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3718 -0.9 -3.6 Tfp pilus assembly protein PilN compare
Psest_2872 -0.9 -2.0 protein RecA compare
Psest_1752 -0.9 -1.3 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_1506 -0.9 -4.1 queuosine biosynthesis protein QueC compare
Psest_3178 -0.9 -2.1 formyltetrahydrofolate deformylase compare
Psest_4134 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0707 -0.9 -3.0 MYND finger. compare
Psest_2911 -0.9 -1.7 Protein of unknown function (DUF2945). compare
Psest_1813 -0.9 -5.5 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3988 -0.9 -4.8 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_4243 -0.8 -1.0 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1920 -0.8 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_2331 -0.8 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_3323 -0.8 -4.4 ribonuclease, Rne/Rng family compare
Psest_0357 -0.8 -2.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3720 -0.8 -7.0 penicillin-binding protein, 1A family compare
Psest_1241 -0.8 -4.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0857 -0.8 -1.9 Membrane transporters of cations and cationic drugs compare
Psest_2708 -0.8 -5.0 transaldolase compare
Psest_0445 -0.8 -5.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0718 -0.8 -2.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_2101 -0.8 -1.4 hypothetical protein compare
Psest_1582 -0.8 -1.9 Protein of unknown function (DUF3087). compare
Psest_2975 -0.8 -1.4 tRNA_Arg_CCT compare
Psest_3575 -0.8 -2.9 Arabinose efflux permease compare
Psest_0632 -0.8 -2.1 hypothetical protein compare
Psest_0208 -0.8 -4.7 Uncharacterized protein conserved in bacteria compare
Psest_3287 -0.8 -2.6 Type II secretory pathway, component PulF compare
Psest_2001 -0.8 -1.2 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2643 -0.8 -1.9 Beta-glucosidase-related glycosidases compare
Psest_1884 -0.8 -1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4158 -0.8 -1.9 Flagellar motor protein compare
Psest_0805 -0.7 -1.9 hypothetical protein compare
Psest_0137 -0.7 -4.0 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3044 -0.7 -3.1 deoxycytidine triphosphate deaminase compare
Psest_1691 -0.7 -2.1 aminodeoxychorismate lyase compare
Psest_3803 -0.7 -0.8 DNA repair protein radc compare
Psest_1035 -0.7 -3.3 hypothetical protein compare
Psest_2531 -0.7 -5.2 cytochrome c oxidase accessory protein FixG compare
Psest_0719 -0.7 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_2711 -0.7 -2.1 PilZ domain. compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments

For carbon source Sodium D,L-Lactate across organisms