Experiment set10H24 for Pseudomonas stutzeri RCH2

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_0152 -6.5 -7.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_3647 -6.5 -6.4 Indole-3-glycerol phosphate synthase compare
Psest_0508 -6.5 -10.9 gamma-glutamyl phosphate reductase compare
Psest_3866 -6.5 -17.8 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3818 -6.2 -9.5 endoribonuclease L-PSP, putative compare
Psest_2584 -6.2 -4.3 Phosphoribosylanthranilate isomerase compare
Psest_2591 -6.1 -4.2 3-isopropylmalate dehydratase, large subunit compare
Psest_0153 -6.1 -13.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0952 -6.0 -4.2 Uncharacterized conserved protein compare
Psest_2578 -5.8 -14.6 O-succinylhomoserine sulfhydrylase compare
Psest_0155 -5.8 -8.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2590 -5.8 -1.8 3-isopropylmalate dehydratase, small subunit compare
Psest_0279 -5.8 -8.8 methionine biosynthesis protein MetW compare
Psest_3648 -5.8 -11.0 anthranilate phosphoribosyltransferase compare
Psest_3384 -5.7 -10.3 glutamate 5-kinase compare
Psest_3650 -5.7 -17.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0062 -5.6 -16.3 tryptophan synthase, alpha subunit compare
Psest_0954 -5.5 -11.1 Fe-S oxidoreductase compare
Psest_3299 -5.4 -16.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0280 -5.4 -17.7 homoserine O-acetyltransferase compare
Psest_0063 -5.4 -13.7 tryptophan synthase, beta subunit compare
Psest_1473 -5.4 -9.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0953 -5.4 -13.9 iron-sulfur cluster-binding protein compare
Psest_3649 -5.4 -12.0 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1037 -5.3 -4.5 acetolactate synthase, small subunit compare
Psest_0326 -5.2 -18.9 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3944 -5.1 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3864 -5.0 -16.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3298 -4.9 -11.4 histidinol dehydrogenase compare
Psest_0325 -4.8 -13.7 Putative threonine efflux protein compare
Psest_0687 -4.5 -12.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0170 -4.5 -11.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_0313 -4.4 -9.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3297 -4.3 -15.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2088 -4.1 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_3226 -4.1 -1.7 Predicted membrane protein compare
Psest_2589 -4.1 -11.4 3-isopropylmalate dehydrogenase compare
Psest_1295 -4.0 -7.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0955 -3.7 -7.6 D,L-lactate:H+ symporter (from data) compare
Psest_3721 -3.7 -10.6 Malic enzyme compare
Psest_3998 -3.6 -9.8 glutamate--cysteine ligase compare
Psest_2579 -3.6 -4.3 amidophosphoribosyltransferase compare
Psest_1772 -3.5 -7.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3943 -3.3 -4.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2329 -3.3 -16.6 Transcriptional regulator compare
Psest_0327 -3.2 -5.8 Transcriptional regulator compare
Psest_3338 -2.9 -3.2 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2988 -2.8 -8.6 aspartate kinase, monofunctional class compare
Psest_4085 -2.8 -16.1 Biotin carboxylase compare
Psest_4084 -2.7 -15.7 oxaloacetate decarboxylase alpha subunit compare
Psest_0411 -2.5 -12.1 biotin synthetase compare
Psest_2104 -2.5 -1.7 IscR-regulated protein YhgI compare
Psest_1686 -2.5 -4.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0498 -2.5 -1.1 ribosome small subunit-dependent GTPase A compare
Psest_1013 -2.4 -1.7 phosphoribosylamine--glycine ligase compare
Psest_0489 -2.4 -2.3 phosphoserine phosphatase SerB compare
Psest_4298 -2.3 -1.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3810 -2.3 -1.5 orotate phosphoribosyltransferase compare
Psest_3159 -2.2 -6.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_4086 -2.2 -11.9 Transcriptional regulator compare
Psest_2809 -2.2 -4.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1012 -2.2 -5.3 Signal transduction histidine kinase compare
Psest_3129 -2.1 -1.6 tyrosine recombinase XerD compare
Psest_1474 -2.1 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_1292 -2.0 -8.8 monothiol glutaredoxin, Grx4 family compare
Psest_0297 -1.8 -6.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0193 -1.7 -1.1 conserved hypothetical protein compare
Psest_1496 -1.7 -1.4 Holliday junction DNA helicase, RuvA subunit compare
Psest_2090 -1.6 -2.9 Protein of unknown function (DUF2970). compare
Psest_3047 -1.6 -1.5 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3351 -1.6 -5.1 peptide chain release factor 3 compare
Psest_1679 -1.6 -1.8 ribonuclease, Rne/Rng family compare
Psest_0028 -1.5 -4.8 Coproporphyrinogen III oxidase compare
Psest_0722 -1.5 -6.8 Predicted ATPase compare
Psest_3288 -1.5 -9.1 type IV-A pilus assembly ATPase PilB compare
Psest_4044 -1.5 -3.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2864 -1.4 -3.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0306 -1.4 -9.9 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2708 -1.4 -8.6 transaldolase compare
Psest_1947 -1.4 -1.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1479 -1.4 -3.5 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_1527 -1.4 -8.7 Na+/proline symporter compare
Psest_1277 -1.4 -8.2 2-isopropylmalate synthase, yeast type compare
Psest_0998 -1.4 -4.0 poly(A) polymerase compare
Psest_0412 -1.3 -8.4 8-amino-7-oxononanoate synthase compare
Psest_1704 -1.3 -1.7 Dehydrogenases (flavoproteins) compare
Psest_3960 -1.3 -2.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0031 -1.3 -2.1 Uncharacterized conserved protein compare
Psest_2333 -1.3 -1.2 Protein of unknown function (DUF3359). compare
Psest_0334 -1.3 -2.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3123 -1.3 -2.7 dihydroorotase, homodimeric type compare
Psest_2327 -1.3 -6.1 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_0706 -1.3 -6.0 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3178 -1.3 -2.3 formyltetrahydrofolate deformylase compare
Psest_2945 -1.2 -1.6 septum site-determining protein MinC compare
Psest_3766 -1.2 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_4363 -1.2 -5.4 ATPases involved in chromosome partitioning compare
Psest_3323 -1.2 -4.2 ribonuclease, Rne/Rng family compare
Psest_0415 -1.2 -3.8 dethiobiotin synthase compare
Psest_1695 -1.2 -3.9 Tfp pilus assembly protein PilZ compare
Psest_2527 -1.2 -5.7 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3375 -1.2 -6.2 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0442 -1.2 -2.8 ATPases of the AAA+ class compare
Psest_2719 -1.2 -1.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1870 -1.2 -1.3 Transcriptional regulators compare
Psest_3146 -1.2 -1.8 hypothetical protein compare
Psest_2946 -1.2 -3.1 septum site-determining protein MinD compare
Psest_3287 -1.2 -3.1 Type II secretory pathway, component PulF compare
Psest_1242 -1.2 -2.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0175 -1.1 -5.6 Xaa-Pro aminopeptidase compare
Psest_3719 -1.1 -6.9 type IV pilus assembly protein PilM compare
Psest_3843 -1.1 -5.8 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3860 -1.1 -2.3 Predicted permeases compare
Psest_0024 -1.1 -6.2 LysM domain. compare
Psest_2680 -1.1 -3.9 transcriptional regulator, BolA protein family compare
Psest_0296 -1.1 -5.9 glutathione synthetase, prokaryotic compare
Psest_2810 -1.1 -3.6 5'/3'-nucleotidase SurE compare
Psest_3806 -1.1 -4.9 Phosphomannomutase compare
Psest_2325 -1.1 -5.7 alpha-L-glutamate ligase-related protein compare
Psest_2324 -1.1 -8.7 hypothetical protein compare
Psest_3809 -1.1 -3.1 hypothetical protein compare
Psest_1813 -1.1 -6.3 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0413 -1.1 -4.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0491 -1.0 -5.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0445 -1.0 -6.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0705 -1.0 -7.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3732 -1.0 -4.8 polyphosphate kinase 1 compare
Psest_3322 -1.0 -8.3 TIGR02099 family protein compare
Psest_3419 -1.0 -5.4 Predicted transcriptional regulators compare
Psest_3715 -1.0 -7.4 type IV pilus secretin (or competence protein) PilQ compare
Psest_4005 -1.0 -2.6 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_3716 -1.0 -6.2 Tfp pilus assembly protein PilP compare
Psest_3670 -1.0 -6.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3988 -1.0 -6.4 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1724 -1.0 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0707 -0.9 -4.0 MYND finger. compare
Psest_2331 -0.9 -6.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_3550 -0.9 -1.4 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_3767 -0.9 -2.7 tyrosine recombinase XerC compare
Psest_3247 -0.9 -1.2 Uncharacterized membrane protein compare
Psest_3447 -0.9 -1.3 Uncharacterized MobA-related protein compare
Psest_2323 -0.9 -6.5 Uncharacterized protein conserved in archaea compare
Psest_4370 -0.9 -2.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0300 -0.9 -4.8 Methyl-accepting chemotaxis protein compare
Psest_0212 -0.9 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_2316 -0.9 -6.5 phosphoenolpyruvate synthase compare
Psest_3490 -0.9 -3.3 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_2872 -0.9 -1.4 protein RecA compare
Psest_0857 -0.9 -1.8 Membrane transporters of cations and cationic drugs compare
Psest_2532 -0.9 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_4097 -0.9 -5.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0401 -0.9 -1.4 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_4191 -0.9 -1.8 Transcriptional regulator compare
Psest_3717 -0.9 -4.2 Tfp pilus assembly protein PilO compare
Psest_3744 -0.9 -3.8 Disulfide bond formation protein DsbB compare
Psest_3180 -0.9 -4.2 Exonuclease I compare
Psest_2037 -0.9 -4.3 uroporphyrin-III C-methyltransferase compare
Psest_4309 -0.9 -2.4 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_0285 -0.8 -4.5 pilus retraction protein PilT compare
Psest_3664 -0.8 -0.9 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_1492 -0.8 -5.4 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0511 -0.8 -1.4 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_1509 -0.8 -3.9 quinolinate synthetase complex, A subunit compare
Psest_2530 -0.8 -3.2 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2027 -0.8 -4.7 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_0393 -0.8 -3.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1814 -0.8 -5.4 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4219 -0.8 -1.6 DNA polymerase I compare
Psest_1139 -0.8 -3.1 PAS domain S-box compare
Psest_2645 -0.8 -3.2 Transcriptional regulator compare
Psest_3286 -0.8 -3.0 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_3339 -0.8 -3.8 Signal transduction histidine kinase compare
Psest_4124 -0.8 -2.2 hypothetical protein compare
Psest_3145 -0.8 -1.1 hypothetical protein compare
Psest_3139 -0.8 -3.2 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_2506 -0.8 -2.8 Uncharacterized flagellar protein FlaG compare
Psest_4287 -0.8 -3.6 Predicted glutamine amidotransferases compare
Psest_3289 -0.8 -3.8 prepilin-type N-terminal cleavage/methylation domain compare
Psest_2714 -0.8 -1.6 7-cyano-7-deazaguanine reductase compare
Psest_4395 -0.8 -4.6 hypothetical protein compare
Psest_2158 -0.8 -6.0 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_2120 -0.7 -2.0 Transcriptional regulator compare
Psest_2612 -0.7 -2.8 hypothetical protein compare
Psest_0164 -0.7 -0.8 Glutaredoxin, GrxC family compare
Psest_0673 -0.7 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3772 -0.7 -2.8 ammonium transporter compare
Psest_0316 -0.7 -1.7 Cytochrome c556 compare
Psest_2855 -0.7 -0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1822 -0.7 -4.5 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0466 -0.7 -2.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0038 -0.7 -2.9 hypothetical protein compare
Psest_1163 -0.7 -2.4 diguanylate cyclase (GGDEF) domain compare
Psest_0568 -0.7 -2.3 pseudouridine synthase compare
Psest_0182 -0.7 -4.1 glycine cleavage system H protein compare
Psest_2001 -0.7 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2773 -0.7 -2.9 glycerol kinase compare
Psest_0999 -0.7 -1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0791 -0.7 -2.3 Acyl-CoA dehydrogenases compare
Psest_3720 -0.7 -5.7 penicillin-binding protein, 1A family compare
Psest_0691 -0.7 -4.9 ribonuclease R compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments

For carbon source Sodium L-Lactate across organisms