Experiment set10H24 for Pseudomonas stutzeri RCH2

Compare to:

Sodium L-Lactate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Psest_2260 +2.7 24.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1635 +2.7 24.7 Signal transduction histidine kinase compare
Psest_3031 +2.0 2.3 hypothetical protein compare
Psest_0538 +2.0 19.4 Signal transduction histidine kinase compare
Psest_1840 +2.0 19.2 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_1661 +1.8 4.3 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1725 +1.8 12.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1923 +1.8 9.8 adhesin-associated BNR repeat protein (from data) compare
Psest_1122 +1.7 14.6 putative adhesin (DUF1302) (from data) compare
Psest_2232 +1.7 14.2 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1924 +1.7 14.8 adhesin-associated MmpL efflux pump (from data) compare
Psest_1567 +1.6 5.1 Transcriptional regulator compare
Psest_2136 +1.4 10.3 Predicted homoserine dehydrogenase compare
Psest_4273 +1.4 8.4 Lysophospholipase compare
Psest_3100 +1.4 6.1 RNA polymerase sigma factor RpoE compare
Psest_2025 +1.3 2.5 cold shock domain protein CspD compare
Psest_3531 +1.3 2.2 Peptidase propeptide and YPEB domain. compare
Psest_1733 +1.3 6.1 flagellar biosynthetic protein FliQ compare
Psest_1457 +1.3 4.2 FOG: Ankyrin repeat compare
Psest_1656 +1.3 3.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3113 +1.2 1.4 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0993 +1.2 7.9 Glucose-6-phosphate isomerase compare
Psest_3938 +1.1 4.0 Uncharacterized protein conserved in bacteria compare
Psest_0487 +1.1 4.3 Uncharacterized protein conserved in bacteria compare
Psest_1974 +1.1 4.2 integration host factor, alpha subunit compare
Psest_1625 +1.1 4.2 hypothetical protein compare
Psest_1657 +1.0 1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3651 +1.0 4.2 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3518 +1.0 0.7 Transcriptional regulators compare
Psest_0133 +1.0 1.3 type VI secretion protein, VC_A0107 family compare
Psest_0115 +1.0 2.2 Predicted integral membrane protein compare
Psest_2066 +1.0 1.1 ABC-type uncharacterized transport system, permease component compare
Psest_0192 +1.0 4.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2793 +1.0 3.7 hypothetical protein compare
Psest_3841 +1.0 4.3 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_1230 +0.9 2.3 Uncharacterized protein conserved in bacteria compare
Psest_3884 +0.9 1.4 Signal transduction histidine kinase compare
Psest_2757 +0.9 1.4 hypothetical protein compare
Psest_0956 +0.9 6.2 Transcriptional regulators compare
Psest_1734 +0.9 6.2 flagellar biosynthetic protein FliR compare
Psest_1417 +0.9 1.4 hypothetical protein compare
Psest_3371 +0.9 6.2 type IV pilus modification protein PilV compare
Psest_2775 +0.9 3.2 Glycerol-3-phosphate dehydrogenase compare
Psest_1540 +0.9 1.7 biotin-dependent carboxylase uncharacterized domain compare
Psest_1940 +0.9 2.1 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_0347 +0.9 7.0 large component of pyruvate/D-alanine transporter (actP-like) (from data) compare
Psest_0692 +0.9 2.8 rRNA methylase, putative, group 3 compare
Psest_1087 +0.9 1.5 uncharacterized peroxidase-related enzyme compare
Psest_4177 +0.9 1.5 flagellar biosynthetic protein FliP compare
Psest_4010 +0.8 1.6 peroxiredoxin, OsmC subfamily compare
Psest_0503 +0.8 2.2 Acyl dehydratase compare
Psest_2424 +0.8 0.8 K+ transport systems, NAD-binding component compare
Psest_1805 +0.8 2.3 integration host factor, beta subunit compare
Psest_3216 +0.8 7.9 diguanylate cyclase (GGDEF) domain compare
Psest_0309 +0.8 1.0 RND family efflux transporter, MFP subunit compare
Psest_3217 +0.8 8.0 PAS domain S-box compare
Psest_3921 +0.8 1.5 Uncharacterized protein conserved in bacteria compare
Psest_1655 +0.8 3.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0014 +0.8 3.8 PilZ domain. compare
Psest_0243 +0.8 1.8 hypothetical protein compare
Psest_0311 +0.8 4.3 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1723 +0.8 4.8 flagellar export protein FliJ compare
Psest_2383 +0.8 4.2 Predicted transcriptional regulators compare
Psest_1349 +0.8 2.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0108 +0.8 4.6 malonate decarboxylase, epsilon subunit compare
Psest_0831 +0.8 1.4 hypothetical protein compare
Psest_3974 +0.8 3.6 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_4382 +0.8 6.8 hypothetical protein compare
Psest_0417 +0.8 2.1 Acyl-CoA dehydrogenases compare
Psest_2778 +0.8 2.5 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3395 +0.7 1.4 hypothetical protein compare
Psest_3963 +0.7 5.4 PAS domain S-box compare
Psest_1195 +0.7 2.3 xanthine permease compare
Psest_2067 +0.7 1.0 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3476 +0.7 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3317 +0.7 2.1 Phosphotransferase System HPr (HPr) Family compare
Psest_4152 +0.7 3.0 flagellar basal-body rod protein FlgC compare
Psest_0191 +0.7 0.9 PAS domain S-box compare
Psest_4082 +0.7 3.2 hypothetical protein compare
Psest_0181 +0.7 3.5 glycine cleavage system T protein compare
Psest_4134 +0.7 1.6 Uncharacterized protein conserved in bacteria compare
Psest_3080 +0.7 1.2 AraC-type DNA-binding domain-containing proteins compare
Psest_0696 +0.7 3.3 hypothetical protein compare
Psest_1731 +0.7 1.8 flagellar biosynthetic protein FliO compare
Psest_2901 +0.7 1.4 hypothetical protein compare
Psest_0595 +0.7 2.9 Uncharacterized conserved protein compare
Psest_1720 +0.7 4.5 flagellar motor switch protein FliG compare
Psest_3832 +0.7 1.7 hypothetical protein compare
Psest_0103 +0.7 2.4 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_2520 +0.7 1.9 Predicted SAM-dependent methyltransferase compare
Psest_3168 +0.7 1.7 Molybdopterin converting factor, large subunit compare
Psest_3092 +0.7 1.1 ribonuclease III, bacterial compare
Psest_2906 +0.7 3.5 tRNA_Thr_CGT compare
Psest_1722 +0.7 4.9 flagellar protein export ATPase FliI compare
Psest_3812 +0.7 2.6 Uncharacterized protein conserved in bacteria compare
Psest_4056 +0.7 2.2 FMN reductase, SsuE family compare
Psest_3270 +0.7 1.1 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0744 +0.7 1.0 Uncharacterized conserved protein compare
Psest_3185 +0.7 1.9 MoxR-like ATPases compare
Psest_3659 +0.7 1.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1718 +0.7 2.4 flagellar hook-basal body complex protein FliE compare
Psest_0094 +0.7 2.5 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3331 +0.7 2.2 rare lipoprotein A compare
Psest_1768 +0.6 1.7 thiopurine S-methyltransferase, Se/Te detoxification family compare
Psest_0872 +0.6 0.8 Helix-turn-helix. compare
Psest_3373 +0.6 3.2 Tfp pilus assembly protein PilX compare
Psest_3913 +0.6 2.4 hypothetical protein compare
Psest_3157 +0.6 2.8 hypothetical protein compare
Psest_3372 +0.6 4.1 Tfp pilus assembly protein PilW compare
Psest_2646 +0.6 1.4 SOS regulatory protein LexA compare
Psest_0925 +0.6 3.1 Uncharacterized conserved protein compare
Psest_0845 +0.6 0.8 hypothetical protein compare
Psest_3734 +0.6 3.7 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis compare
Psest_0105 +0.6 2.8 malonate decarboxylase, beta subunit compare
Psest_1737 +0.6 3.2 flagellar biosynthesis protein FlhA compare
Psest_2022 +0.6 2.1 ADP-ribose pyrophosphatase compare
Psest_2648 +0.6 1.9 hypothetical protein compare
Psest_3002 +0.6 1.2 Putative translation initiation inhibitor, yjgF family compare
Psest_3192 +0.6 3.6 diguanylate cyclase (GGDEF) domain compare
Psest_1370 +0.6 2.0 hypothetical protein compare
Psest_3045 +0.6 0.8 Cold shock proteins compare
Psest_1938 +0.6 3.1 hypothetical protein compare
Psest_0349 +0.6 3.6 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_2429 +0.6 2.1 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_2122 +0.6 1.0 Parvulin-like peptidyl-prolyl isomerase compare
Psest_4183 +0.6 1.0 PilZ domain. compare
Psest_2538 +0.6 1.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1634 +0.6 3.9 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain compare
Psest_1939 +0.6 3.5 Tetratricopeptide repeat. compare
Psest_3070 +0.6 1.6 3-oxoadipyl-CoA thiolase compare
Psest_2461 +0.6 3.0 tRNA 2-selenouridine synthase compare
Psest_4052 +0.6 2.7 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0064 +0.6 2.1 Transcriptional regulator compare
Psest_1217 +0.6 3.1 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_3128 +0.6 2.5 Protein-disulfide isomerase compare
Psest_4140 +0.6 3.9 Acyl-CoA dehydrogenases compare
Psest_0310 +0.6 2.0 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2288 +0.6 1.8 trigger factor compare
Psest_3496 +0.5 0.9 Predicted metal-binding protein compare
Psest_1123 +0.5 4.4 adhesin-associated sorting protein (DUF1329) (from data) compare
Psest_1215 +0.5 1.2 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_0348 +0.5 2.1 hypothetical protein compare
Psest_1729 +0.5 1.9 flagellar motor switch protein FliM compare
Psest_2123 +0.5 1.2 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_4113 +0.5 4.0 hypothetical protein compare
Psest_2229 +0.5 1.1 Uncharacterized protein conserved in bacteria compare
Psest_4220 +0.5 1.8 Protein of unknown function (DUF2782). compare
Psest_3202 +0.5 1.9 Flavodoxins compare
Psest_2966 +0.5 3.3 Flagellar hook capping protein compare
Psest_1735 +0.5 2.8 flagellar biosynthetic protein FlhB compare
Psest_0446 +0.5 3.6 hypothetical protein compare
Psest_0409 +0.5 1.3 Putative homoserine kinase type II (protein kinase fold) compare
Psest_3853 +0.5 1.4 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0495 +0.5 2.6 HDOD domain. compare
Psest_2724 +0.5 2.0 hypothetical protein compare
Psest_3400 +0.5 0.7 Copper resistance protein D. compare
Psest_0346 +0.5 2.0 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_4403 +0.5 3.3 hypothetical protein compare
Psest_1843 +0.5 1.6 Uncharacterized Fe-S protein compare
Psest_2716 +0.5 1.8 ABC-type multidrug transport system, ATPase component compare
Psest_0737 +0.5 0.7 Cu(I)-responsive transcriptional regulator compare
Psest_1907 +0.5 1.1 hypothetical protein compare
Psest_0770 +0.5 2.4 alkylphosphonate utilization operon protein PhnA compare
Psest_3250 +0.5 2.4 Rho termination factor, N-terminal domain. compare
Psest_2744 +0.5 0.8 Uncharacterized conserved protein compare
Psest_0828 +0.5 2.1 Nitric oxide reductase activation protein compare
Psest_0106 +0.5 2.4 malonate decarboxylase, gamma subunit compare
Psest_1134 +0.5 2.2 alkyl hydroperoxide reductase, F subunit compare
Psest_2150 +0.5 1.6 DNA polymerase LigD, polymerase domain compare
Psest_2771 +0.5 1.8 Predicted membrane protein compare
Psest_3868 +0.5 3.4 Uncharacterized conserved protein compare
Psest_3883 +0.5 2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1504 +0.5 2.1 tol-pal system protein YbgF compare
Psest_1912 +0.5 2.3 Protein of unknown function (DUF1260). compare
Psest_1592 +0.5 1.9 hypothetical protein compare
Psest_2462 +0.5 3.6 selenium donor protein compare
Psest_0959 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
Psest_3318 +0.5 3.8 Predicted Zn-dependent proteases and their inactivated homologs compare
Psest_0402 +0.5 1.4 glycosyltransferase, MGT family compare
Psest_2950 +0.5 2.0 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_0697 +0.5 1.7 ribosomal protein L9 compare
Psest_2135 +0.5 1.8 Peroxiredoxin compare
Psest_2723 +0.5 2.1 Uncharacterized conserved protein compare
Psest_1942 +0.5 2.9 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_3700 +0.5 0.9 hypothetical protein compare
Psest_1905 +0.5 1.2 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_2594 +0.5 1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3984 +0.5 1.7 Methyl-accepting chemotaxis protein compare
Psest_0066 +0.5 0.7 Protein of unknown function (DUF3060). compare
Psest_3275 +0.5 2.9 Stringent starvation protein B compare
Psest_1148 +0.5 3.2 Putative heme iron utilization protein compare
Psest_4280 +0.5 1.8 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_4013 +0.5 2.4 TRAP transporter, DctM subunit compare
Psest_4278 +0.5 2.2 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0190 +0.5 1.8 Uncharacterized conserved protein compare
Psest_3877 +0.5 2.7 Predicted membrane protein compare
Psest_2770 +0.5 2.5 Superfamily II DNA and RNA helicases compare
Psest_1601 +0.5 1.2 Signal transduction histidine kinase compare
Psest_1677 +0.5 1.1 Protein-tyrosine-phosphatase compare
Psest_4139 +0.4 3.6 PAS domain S-box compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments

For carbon source Sodium L-Lactate across organisms